Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:65353818-65753828

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35 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Slc38a11 2 65316633 to 65364026 47393 - protein coding gene solute carrier family 38, member 11
Tssr24361 2 65363925 to 65363936 11 - TSS region transcription start site region 24361
Tssr24362 2 65363940 to 65363950 10 - TSS region transcription start site region 24362
Cpgi11698 2 65363986 to 65364241 255 CpG island CpG island 11698
Tssr24363 2 65364011 to 65364066 55 - TSS region transcription start site region 24363
Mir6337 2 65364296 to 65364400 104 - miRNA gene microRNA 6337
Gm24138 2 65376169 to 65376282 113 - snoRNA gene predicted gene, 24138
Gm34688 2 65384734 to 65388674 3940 + lncRNA gene predicted gene, 34688
Gm34739 2 65401809 to 65415355 13546 - lncRNA gene predicted gene, 34739
Hdl1 2 65439402 to 65439590 188 QTL high density lipoprotein (HDL) level 1
Eae21 2 65439402 to 65439590 188 QTL experimental allergic encephalomyelitis susceptibility 21
Moo1 2 65439402 to 65439590 188 QTL modifier of obesity 1
D2Mit9 2 65439402 to 65439590 188 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 9
Alcw4 2 65439402 to 65439590 188 QTL alcohol withdrawal 4
Scn3a 2 65457118 to 65567527 110409 - protein coding gene sodium channel, voltage-gated, type III, alpha
Tssr24364 2 65458750 to 65458753 3 - TSS region transcription start site region 24364
Cpgi11699 2 65508449 to 65508602 153 CpG island CpG island 11699
Gm13595 2 65509265 to 65512605 3340 + antisense lncRNA gene predicted gene 13595
Tssr24365 2 65529275 to 65529278 3 - TSS region transcription start site region 24365
Gm34833 2 65552664 to 65585288 32624 + lncRNA gene predicted gene, 34833
Tssr17983 2 65553818 to 65553828 10 + TSS region transcription start site region 17983
Tssr17984 2 65553849 to 65553856 7 + TSS region transcription start site region 17984
Tssr24366 2 65567292 to 65567309 17 - TSS region transcription start site region 24366
Tssr24367 2 65567310 to 65567336 26 - TSS region transcription start site region 24367
Tssr24368 2 65567465 to 65567495 30 - TSS region transcription start site region 24368
Tssr24369 2 65567505 to 65567527 22 - TSS region transcription start site region 24369
Tssr17985 2 65620757 to 65620826 69 + TSS region transcription start site region 17985
Scn2a 2 65620771 to 65767447 146676 + protein coding gene sodium channel, voltage-gated, type II, alpha
Tssr17986 2 65620829 to 65620834 5 + TSS region transcription start site region 17986
Tssr17987 2 65620934 to 65620945 11 + TSS region transcription start site region 17987
Tssr17988 2 65620962 to 65620974 12 + TSS region transcription start site region 17988
D2Mit90 2 65665877 to 65665960 83 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 90
Tssr17989 2 65668730 to 65668746 16 + TSS region transcription start site region 17989
Tssr17990 2 65668753 to 65668769 16 + TSS region transcription start site region 17990
Mobq5 2 162677006 to 65439402 -97237604 QTL multigenic obesity QTL 5