Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:62631434-65544677

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129 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pbwg1.3 2 57297111 to 65302151 8005040 QTL postnatal body weight growth 1.3
Ifih1 2 62595798 to 62646255 50457 - protein coding gene interferon induced with helicase C domain 1
Tssr24309 2 62645544 to 62645598 54 - TSS region transcription start site region 24309
Tssr24310 2 62645606 to 62645638 32 - TSS region transcription start site region 24310
Cpgi11692 2 62645647 to 62646398 751 CpG island CpG island 11692
Tssr24311 2 62645942 to 62645964 22 - TSS region transcription start site region 24311
Tssr24312 2 62646146 to 62646234 88 - TSS region transcription start site region 24312
Tssr17964 2 62646294 to 62646304 10 + TSS region transcription start site region 17964
Cpgi11693 2 62664199 to 62664673 474 CpG island CpG island 11693
Tssr17965 2 62664279 to 62664300 21 + TSS region transcription start site region 17965
Tssr17966 2 62664306 to 62664311 5 + TSS region transcription start site region 17966
Tssr17967 2 62664319 to 62664335 16 + TSS region transcription start site region 17967
Gca 2 62664327 to 62694109 29782 + protein coding gene grancalcin
Gm13590 2 62668796 to 62670370 1574 - pseudogene predicted gene 13590
Tssr17968 2 62686137 to 62686168 31 + TSS region transcription start site region 17968
Tssr17969 2 62692613 to 62692633 20 + TSS region transcription start site region 17969
Tssr17970 2 62692724 to 62692766 42 + TSS region transcription start site region 17970
Kcnh7 2 62699300 to 63184287 484987 - protein coding gene potassium voltage-gated channel, subfamily H (eag-related), member 7
Tssr24313 2 62773410 to 62773413 3 - TSS region transcription start site region 24313
Tssr24314 2 62800728 to 62800733 5 - TSS region transcription start site region 24314
Gm22020 2 62802489 to 62802624 135 - snoRNA gene predicted gene, 22020
Gm13569 2 62809187 to 62810698 1511 + antisense lncRNA gene predicted gene 13569
Tssr17971 2 62968177 to 62968182 5 + TSS region transcription start site region 17971
Tssr17972 2 62968194 to 62968203 9 + TSS region transcription start site region 17972
Tssr24315 2 63080103 to 63080111 8 - TSS region transcription start site region 24315
Tssr24316 2 63088259 to 63088265 6 - TSS region transcription start site region 24316
Tssr24317 2 63113123 to 63113133 10 - TSS region transcription start site region 24317
Tssr24318 2 63123905 to 63123909 4 - TSS region transcription start site region 24318
Cpgi11694 2 63183938 to 63184518 580 CpG island CpG island 11694
Tssr24319 2 63184184 to 63184195 11 - TSS region transcription start site region 24319
Gm34110 2 63184214 to 63196617 12403 + lncRNA gene predicted gene, 34110
Tssr24320 2 63184236 to 63184252 16 - TSS region transcription start site region 24320
Tssr24321 2 63184253 to 63184292 39 - TSS region transcription start site region 24321
Tssr24322 2 63184298 to 63184335 37 - TSS region transcription start site region 24322
Tssr24323 2 63184458 to 63184469 11 - TSS region transcription start site region 24323
Tssr24324 2 63184534 to 63184549 15 - TSS region transcription start site region 24324
Tssr24325 2 63184554 to 63184566 12 - TSS region transcription start site region 24325
Tssr17973 2 63221852 to 63221853 1 + TSS region transcription start site region 17973
Gm34291 2 63230353 to 63269980 39627 - lncRNA gene predicted gene, 34291
Gm23503 2 63432088 to 63432194 106 - snRNA gene predicted gene, 23503
Gm8541 2 63525464 to 63575288 49824 - unclassified gene predicted gene 8541
D2Mit124 2 63922078 to 63922303 225 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 124
nm3 2 63922078 to 68092934 4170856 heritable phenotypic marker neurological mutant 3
Fign 2 63971508 to 64098038 126530 - protein coding gene fidgetin
Tssr509 2 64043768 to 64043771 3 + TSS region transcription start site region 509
Tssr24326 2 64055382 to 64055398 16 - TSS region transcription start site region 24326
A730008I21Rik 2 64086434 to 64089677 3243 unclassified gene RIKEN cDNA A730008I21 gene
Tssr24327 2 64096714 to 64096719 5 - TSS region transcription start site region 24327
Cpgi11695 2 64097835 to 64098998 1163 CpG island CpG island 11695
Tssr24328 2 64097886 to 64097912 26 - TSS region transcription start site region 24328
Tssr24329 2 64097917 to 64097938 21 - TSS region transcription start site region 24329
Tssr24330 2 64097994 to 64098023 29 - TSS region transcription start site region 24330
Tssr510 2 64191542 to 64191544 2 + TSS region transcription start site region 510
Gm13575 2 64382602 to 64393860 11258 - lincRNA gene predicted gene 13575
D2Mit326 2 64392603 to 64392724 121 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 326
Tssr24331 2 64393808 to 64393812 4 - TSS region transcription start site region 24331
Tssr24332 2 64393853 to 64393862 9 - TSS region transcription start site region 24332
Gm13577 2 64474745 to 64474949 204 - pseudogene predicted gene 13577
Gm13576 2 64569866 to 64570634 768 - pseudogene predicted gene 13576
Tssr17974 2 64820881 to 64820883 2 + TSS region transcription start site region 17974
Gm13578 2 64867999 to 64868588 589 - pseudogene predicted gene 13578
Grb14 2 64912476 to 65022766 110290 - protein coding gene growth factor receptor bound protein 14
Tssr24333 2 64916868 to 64916904 36 - TSS region transcription start site region 24333
Tssr24334 2 64916906 to 64916913 7 - TSS region transcription start site region 24334
Tssr24335 2 64916924 to 64916947 23 - TSS region transcription start site region 24335
Tssr24336 2 64975633 to 64975638 5 - TSS region transcription start site region 24336
Tssr24337 2 64975659 to 64975674 15 - TSS region transcription start site region 24337
Tssr24338 2 64975683 to 64975691 8 - TSS region transcription start site region 24338
Tssr24339 2 64975700 to 64975717 17 - TSS region transcription start site region 24339
Tssr24340 2 64975725 to 64975758 33 - TSS region transcription start site region 24340
Tssr24341 2 64975762 to 64975795 33 - TSS region transcription start site region 24341
6030442H21Rik 2 65017240 to 65018511 1271 unclassified gene RIKEN cDNA 6030442H21 gene
Cpgi11696 2 65022259 to 65023243 984 CpG island CpG island 11696
Tssr24342 2 65022740 to 65022816 76 - TSS region transcription start site region 24342
Tssr24343 2 65023188 to 65023196 8 - TSS region transcription start site region 24343
Cobll1 2 65088339 to 65239403 151064 - protein coding gene Cobl-like 1
Tssr24344 2 65089188 to 65089190 2 - TSS region transcription start site region 24344
Tssr24345 2 65090438 to 65090441 3 - TSS region transcription start site region 24345
Aips2 2 65119051 to 74881866 9762815 QTL autoimmune pancreatitis severity 2
Tssr24346 2 65171664 to 65171685 21 - TSS region transcription start site region 24346
Tssr24347 2 65171795 to 65171809 14 - TSS region transcription start site region 24347
Tssr24348 2 65188737 to 65188774 37 - TSS region transcription start site region 24348
Tssr24349 2 65189180 to 65189184 4 - TSS region transcription start site region 24349
Tssr17975 2 65189540 to 65189548 8 + TSS region transcription start site region 17975
Tssr17976 2 65189563 to 65189574 11 + TSS region transcription start site region 17976
Tssr24350 2 65211983 to 65211988 5 - TSS region transcription start site region 24350
Tssr24351 2 65237787 to 65237792 5 - TSS region transcription start site region 24351
Cpgi11697 2 65237829 to 65239454 1625 CpG island CpG island 11697
Tssr17977 2 65237833 to 65237846 13 + TSS region transcription start site region 17977
Tssr24352 2 65238441 to 65238497 56 - TSS region transcription start site region 24352
Tssr24353 2 65238503 to 65238530 27 - TSS region transcription start site region 24353
Tssr24354 2 65238593 to 65238609 16 - TSS region transcription start site region 24354
Tssr24355 2 65238625 to 65238643 18 - TSS region transcription start site region 24355
Tssr17978 2 65238733 to 65238762 29 + TSS region transcription start site region 17978
Gm13594 2 65238756 to 65239675 919 + antisense lncRNA gene predicted gene 13594
Tssr17979 2 65238784 to 65238804 20 + TSS region transcription start site region 17979
Tssr24356 2 65238785 to 65238796 11 - TSS region transcription start site region 24356
Tssr24357 2 65239039 to 65239058 19 - TSS region transcription start site region 24357
Tssr24358 2 65239092 to 65239125 33 - TSS region transcription start site region 24358
Tssr24359 2 65239241 to 65239262 21 - TSS region transcription start site region 24359
Tssr17980 2 65277341 to 65277342 1 + TSS region transcription start site region 17980
Gm13592 2 65277417 to 65278426 1009 + pseudogene predicted gene 13592
Tssr24360 2 65293538 to 65293546 8 - TSS region transcription start site region 24360
Gm13593 2 65296190 to 65297369 1179 - pseudogene predicted gene 13593
D2Mit205 2 65302068 to 65302151 83 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 205
Pbwg1.12 2 65302068 to 68873081 3571013 QTL postnatal body weight growth 1.12
Pbwg1.10 2 65302068 to 65302151 83 QTL postnatal body weight growth 1.10
Slc38a11 2 65316633 to 65364026 47393 - protein coding gene solute carrier family 38, member 11
Tssr17981 2 65334310 to 65334320 10 + TSS region transcription start site region 17981
Tssr17982 2 65334323 to 65334331 8 + TSS region transcription start site region 17982
Tssr24361 2 65363925 to 65363936 11 - TSS region transcription start site region 24361
Tssr24362 2 65363940 to 65363950 10 - TSS region transcription start site region 24362
Cpgi11698 2 65363986 to 65364241 255 CpG island CpG island 11698
Tssr24363 2 65364011 to 65364066 55 - TSS region transcription start site region 24363
Mir6337 2 65364296 to 65364400 104 - miRNA gene microRNA 6337
Gm24138 2 65376169 to 65376282 113 - snoRNA gene predicted gene, 24138
Gm34688 2 65384734 to 65388674 3940 + lncRNA gene predicted gene, 34688
Gm34739 2 65401809 to 65415355 13546 - lncRNA gene predicted gene, 34739
Hdl1 2 65439402 to 65439590 188 QTL high density lipoprotein (HDL) level 1
Alcw4 2 65439402 to 65439590 188 QTL alcohol withdrawal 4
D2Mit9 2 65439402 to 65439590 188 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 9
Eae21 2 65439402 to 65439590 188 QTL experimental allergic encephalomyelitis susceptibility 21
Moo1 2 65439402 to 65439590 188 QTL modifier of obesity 1
Scn3a 2 65457118 to 65567527 110409 - protein coding gene sodium channel, voltage-gated, type III, alpha
Tssr24364 2 65458750 to 65458753 3 - TSS region transcription start site region 24364
Cpgi11699 2 65508449 to 65508602 153 CpG island CpG island 11699
Gm13595 2 65509265 to 65512605 3340 + antisense lncRNA gene predicted gene 13595
Tssr24365 2 65529275 to 65529278 3 - TSS region transcription start site region 24365
Mobq5 2 162677006 to 65439402 -97237604 QTL multigenic obesity QTL 5