Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:61637828-62657873

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137 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tank 2 61578585 to 61654171 75586 + protein coding gene TRAF family member-associated Nf-kappa B activator
Tssr17920 2 61643746 to 61643765 19 + TSS region transcription start site region 17920
Tssr17921 2 61644302 to 61644314 12 + TSS region transcription start site region 17921
Tssr17922 2 61649829 to 61649848 19 + TSS region transcription start site region 17922
Tssr17923 2 61649963 to 61649995 32 + TSS region transcription start site region 17923
Tssr17924 2 61650086 to 61650098 12 + TSS region transcription start site region 17924
Tssr17925 2 61652068 to 61652074 6 + TSS region transcription start site region 17925
Tssr17926 2 61653508 to 61653520 12 + TSS region transcription start site region 17926
Tssr17927 2 61653589 to 61653614 25 + TSS region transcription start site region 17927
Cpgi11685 2 61655701 to 61657350 1649 CpG island CpG island 11685
Tssr17928 2 61660969 to 61660983 14 + TSS region transcription start site region 17928
Tssr17929 2 61660989 to 61661012 23 + TSS region transcription start site region 17929
Gm13626 2 61706893 to 61707591 698 - pseudogene predicted gene 13626
Cpgi11686 2 61711523 to 61712083 560 CpG island CpG island 11686
Psmd14 2 61711694 to 61800376 88682 + protein coding gene proteasome (prosome, macropain) 26S subunit, non-ATPase, 14
Tssr17930 2 61711704 to 61711786 82 + TSS region transcription start site region 17930
Tssr17931 2 61711787 to 61711812 25 + TSS region transcription start site region 17931
Tssr17932 2 61711818 to 61711832 14 + TSS region transcription start site region 17932
Tssr17933 2 61727028 to 61727050 22 + TSS region transcription start site region 17933
Tssr24252 2 61747539 to 61747558 19 - TSS region transcription start site region 24252
Tssr17934 2 61752361 to 61752365 4 + TSS region transcription start site region 17934
Gm22403 2 61762386 to 61762469 83 - miRNA gene predicted gene, 22403
Tssr17935 2 61776663 to 61776691 28 + TSS region transcription start site region 17935
Gm25966 2 61798180 to 61798296 116 + rRNA gene predicted gene, 25966
Tbr1 2 61802930 to 61814114 11184 + protein coding gene T-box brain gene 1
Tssr17936 2 61804501 to 61804538 37 + TSS region transcription start site region 17936
Tssr17937 2 61804574 to 61804627 53 + TSS region transcription start site region 17937
Tssr17938 2 61804638 to 61804645 7 + TSS region transcription start site region 17938
Tssr17939 2 61804686 to 61804701 15 + TSS region transcription start site region 17939
Tssr17940 2 61804757 to 61804766 9 + TSS region transcription start site region 17940
Tssr505 2 61804777 to 61804787 10 + TSS region transcription start site region 505
Tssr17941 2 61804887 to 61804906 19 + TSS region transcription start site region 17941
Cpgi11687 2 61804892 to 61805911 1019 CpG island CpG island 11687
Tssr17942 2 61804976 to 61804996 20 + TSS region transcription start site region 17942
Tssr17943 2 61805024 to 61805038 14 + TSS region transcription start site region 17943
Tssr17944 2 61805040 to 61805053 13 + TSS region transcription start site region 17944
Cpgi11688 2 61807118 to 61807486 368 CpG island CpG island 11688
Cpgi11689 2 61811237 to 61812578 1341 CpG island CpG island 11689
Tssr17945 2 61812506 to 61812517 11 + TSS region transcription start site region 17945
Tssr17946 2 61812556 to 61812575 19 + TSS region transcription start site region 17946
Tssr17947 2 61812944 to 61812960 16 + TSS region transcription start site region 17947
Cpgi11690 2 61815012 to 61816317 1305 CpG island CpG island 11690
Gm39837 2 61905380 to 61925936 20556 + lncRNA gene predicted gene, 39837
Gm13555 2 61970354 to 61970672 318 - pseudogene predicted gene 13555
D2Mit516 2 62021247 to 62021362 115 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology-516
Tssr17948 2 62046491 to 62046505 14 + TSS region transcription start site region 17948
Tssr17949 2 62046511 to 62046571 60 + TSS region transcription start site region 17949
Slc4a10 2 62046515 to 62326743 280228 + protein coding gene solute carrier family 4, sodium bicarbonate cotransporter-like, member 10
Tssr17950 2 62046580 to 62046593 13 + TSS region transcription start site region 17950
Tssr506 2 62046598 to 62046611 13 + TSS region transcription start site region 506
Tssr17951 2 62046614 to 62046621 7 + TSS region transcription start site region 17951
Tssr17952 2 62046623 to 62046634 11 + TSS region transcription start site region 17952
Tssr17953 2 62147771 to 62147786 15 + TSS region transcription start site region 17953
Tssr17954 2 62147802 to 62147826 24 + TSS region transcription start site region 17954
Tssr17955 2 62147828 to 62147873 45 + TSS region transcription start site region 17955
Tssr17956 2 62147973 to 62147976 3 + TSS region transcription start site region 17956
Tssr17957 2 62325937 to 62325939 2 + TSS region transcription start site region 17957
Dpp4 2 62330073 to 62412231 82158 - protein coding gene dipeptidylpeptidase 4
Tssr507 2 62343522 to 62343537 15 - TSS region transcription start site region 507
Tssr24253 2 62343633 to 62343653 20 - TSS region transcription start site region 24253
Tssr24254 2 62343657 to 62343668 11 - TSS region transcription start site region 24254
Tssr24255 2 62343670 to 62343701 31 - TSS region transcription start site region 24255
Tssr24256 2 62343728 to 62343739 11 - TSS region transcription start site region 24256
Tssr24257 2 62343817 to 62343831 14 - TSS region transcription start site region 24257
Tssr24258 2 62343967 to 62343974 7 - TSS region transcription start site region 24258
Tssr24259 2 62352132 to 62352177 45 - TSS region transcription start site region 24259
Tssr24260 2 62394933 to 62394940 7 - TSS region transcription start site region 24260
Tssr17958 2 62395146 to 62395169 23 + TSS region transcription start site region 17958
Tssr17959 2 62395186 to 62395197 11 + TSS region transcription start site region 17959
Tssr17960 2 62397943 to 62397948 5 + TSS region transcription start site region 17960
Tssr17961 2 62409079 to 62409085 6 + TSS region transcription start site region 17961
Cpgi11691 2 62411246 to 62412125 879 CpG island CpG island 11691
Tssr24261 2 62411294 to 62411336 42 - TSS region transcription start site region 24261
Tssr24262 2 62411695 to 62411706 11 - TSS region transcription start site region 24262
Tssr24263 2 62411806 to 62411822 16 - TSS region transcription start site region 24263
Tssr24264 2 62411838 to 62411864 26 - TSS region transcription start site region 24264
Tssr24265 2 62411870 to 62411910 40 - TSS region transcription start site region 24265
Tssr24266 2 62411957 to 62411974 17 - TSS region transcription start site region 24266
Tssr24267 2 62411991 to 62412023 32 - TSS region transcription start site region 24267
Tssr24268 2 62412172 to 62412183 11 - TSS region transcription start site region 24268
Tssr508 2 62412197 to 62412206 9 - TSS region transcription start site region 508
Tssr24269 2 62412219 to 62412234 15 - TSS region transcription start site region 24269
Tssr24270 2 62412300 to 62412309 9 - TSS region transcription start site region 24270
Tssr24271 2 62412316 to 62412335 19 - TSS region transcription start site region 24271
Gm13565 2 62436880 to 62441142 4262 - lincRNA gene predicted gene 13565
Gm13564 2 62452936 to 62456648 3712 - lincRNA gene predicted gene 13564
Gm13561 2 62455105 to 62468917 13812 + antisense lncRNA gene predicted gene 13561
Gcg 2 62474530 to 62483650 9120 - protein coding gene glucagon
Tssr24272 2 62480490 to 62480499 9 - TSS region transcription start site region 24272
Tssr24273 2 62483637 to 62483653 16 - TSS region transcription start site region 24273
Fap 2 62500943 to 62574075 73132 - protein coding gene fibroblast activation protein
Tssr24274 2 62573813 to 62573818 5 - TSS region transcription start site region 24274
Tssr24275 2 62573905 to 62573979 74 - TSS region transcription start site region 24275
Tssr24276 2 62592191 to 62592202 11 - TSS region transcription start site region 24276
Ifih1 2 62595798 to 62646255 50457 - protein coding gene interferon induced with helicase C domain 1
Tssr24277 2 62596133 to 62596143 10 - TSS region transcription start site region 24277
Tssr24278 2 62596457 to 62596472 15 - TSS region transcription start site region 24278
Tssr24279 2 62601468 to 62601481 13 - TSS region transcription start site region 24279
Tssr24280 2 62601487 to 62601500 13 - TSS region transcription start site region 24280
Tssr24281 2 62601505 to 62601525 20 - TSS region transcription start site region 24281
Tssr24282 2 62602866 to 62602885 19 - TSS region transcription start site region 24282
Tssr24283 2 62602898 to 62602909 11 - TSS region transcription start site region 24283
Tssr24284 2 62602923 to 62602935 12 - TSS region transcription start site region 24284
Tssr24285 2 62606236 to 62606247 11 - TSS region transcription start site region 24285
Tssr24286 2 62606253 to 62606296 43 - TSS region transcription start site region 24286
Tssr24287 2 62606303 to 62606321 18 - TSS region transcription start site region 24287
Tssr24288 2 62606335 to 62606349 14 - TSS region transcription start site region 24288
Tssr24289 2 62606350 to 62606371 21 - TSS region transcription start site region 24289
Tssr24290 2 62606386 to 62606412 26 - TSS region transcription start site region 24290
Tssr24291 2 62606414 to 62606464 50 - TSS region transcription start site region 24291
Tssr24292 2 62610470 to 62610492 22 - TSS region transcription start site region 24292
Tssr17962 2 62610474 to 62610514 40 + TSS region transcription start site region 17962
Tssr24293 2 62610498 to 62610536 38 - TSS region transcription start site region 24293
Tssr17963 2 62610524 to 62610553 29 + TSS region transcription start site region 17963
Tssr24294 2 62610568 to 62610579 11 - TSS region transcription start site region 24294
Tssr24295 2 62610580 to 62610591 11 - TSS region transcription start site region 24295
Tssr24296 2 62610600 to 62610618 18 - TSS region transcription start site region 24296
Tssr24297 2 62610622 to 62610640 18 - TSS region transcription start site region 24297
Tssr24298 2 62611767 to 62611778 11 - TSS region transcription start site region 24298
Tssr24299 2 62611798 to 62611815 17 - TSS region transcription start site region 24299
Tssr24300 2 62611824 to 62611866 42 - TSS region transcription start site region 24300
Tssr24301 2 62615664 to 62615714 50 - TSS region transcription start site region 24301
Tssr24302 2 62617255 to 62617264 9 - TSS region transcription start site region 24302
Tssr24303 2 62617280 to 62617291 11 - TSS region transcription start site region 24303
Tssr24304 2 62617327 to 62617347 20 - TSS region transcription start site region 24304
Tssr24305 2 62617348 to 62617361 13 - TSS region transcription start site region 24305
Gm39839 2 62619824 to 62623456 3632 + lncRNA gene predicted gene, 39839
Tssr24306 2 62622151 to 62622156 5 - TSS region transcription start site region 24306
Tssr24307 2 62626139 to 62626174 35 - TSS region transcription start site region 24307
Tssr24308 2 62627822 to 62627825 3 - TSS region transcription start site region 24308
Tssr24309 2 62645544 to 62645598 54 - TSS region transcription start site region 24309
Tssr24310 2 62645606 to 62645638 32 - TSS region transcription start site region 24310
Cpgi11692 2 62645647 to 62646398 751 CpG island CpG island 11692
Tssr24311 2 62645942 to 62645964 22 - TSS region transcription start site region 24311
Tssr24312 2 62646146 to 62646234 88 - TSS region transcription start site region 24312
Tssr17964 2 62646294 to 62646304 10 + TSS region transcription start site region 17964
Vclq1 2 137000000 to 62000000 -75000000 QTL curvilinear velocity QTL 1