Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:61018549-62138617

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93 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm13579 2 61030351 to 61030970 619 - pseudogene predicted gene 13579
Gm39833 2 61127636 to 61159954 32318 + lncRNA gene predicted gene, 39833
Gm13581 2 61224792 to 61225082 290 + pseudogene predicted gene 13581
Gm26422 2 61280278 to 61280409 131 + snoRNA gene predicted gene, 26422
Gm33702 2 61340519 to 61358550 18031 - lncRNA gene predicted gene, 33702
Gm39834 2 61360009 to 61370528 10519 - lncRNA gene predicted gene, 39834
Lymph5 2 61368673 to 61368673 0 QTL lymphocyte differential 5
Gm39835 2 61449254 to 61452070 2816 - lncRNA gene predicted gene, 39835
Gm33753 2 61452942 to 61454092 1150 + lncRNA gene predicted gene, 33753
Gm18844 2 61482564 to 61483960 1396 - pseudogene predicted gene, 18844
Gm22338 2 61492766 to 61492894 128 + snoRNA gene predicted gene, 22338
Tssr17894 2 61530570 to 61530586 16 + TSS region transcription start site region 17894
Tssr17895 2 61533482 to 61533499 17 + TSS region transcription start site region 17895
Gm33841 2 61533663 to 61541262 7599 + lncRNA gene predicted gene, 33841
Tssr17896 2 61578534 to 61578540 6 + TSS region transcription start site region 17896
Tssr17897 2 61578549 to 61578617 68 + TSS region transcription start site region 17897
Tank 2 61578585 to 61654171 75586 + protein coding gene TRAF family member-associated Nf-kappa B activator
Tssr17898 2 61578990 to 61578999 9 + TSS region transcription start site region 17898
Tssr17899 2 61582039 to 61582050 11 + TSS region transcription start site region 17899
Tssr17900 2 61582155 to 61582173 18 + TSS region transcription start site region 17900
Tssr17901 2 61587720 to 61587724 4 + TSS region transcription start site region 17901
Tssr17902 2 61589497 to 61589509 12 + TSS region transcription start site region 17902
Tssr17903 2 61590171 to 61590179 8 + TSS region transcription start site region 17903
Cpgi11684 2 61593019 to 61593764 745 CpG island CpG island 11684
Tssr17904 2 61593091 to 61593102 11 + TSS region transcription start site region 17904
Tssr17905 2 61593112 to 61593123 11 + TSS region transcription start site region 17905
Tssr17906 2 61593125 to 61593175 50 + TSS region transcription start site region 17906
Tssr17907 2 61593423 to 61593444 21 + TSS region transcription start site region 17907
Tssr24251 2 61593572 to 61593613 41 - TSS region transcription start site region 24251
Tssr17908 2 61593740 to 61593749 9 + TSS region transcription start site region 17908
Tssr17909 2 61595099 to 61595110 11 + TSS region transcription start site region 17909
Tssr17910 2 61595481 to 61595511 30 + TSS region transcription start site region 17910
Tssr17911 2 61595881 to 61595885 4 + TSS region transcription start site region 17911
Tssr17912 2 61604450 to 61604469 19 + TSS region transcription start site region 17912
Tssr17913 2 61608954 to 61608957 3 + TSS region transcription start site region 17913
Tssr17914 2 61616980 to 61617003 23 + TSS region transcription start site region 17914
Tssr17915 2 61617148 to 61617161 13 + TSS region transcription start site region 17915
Tssr17916 2 61617174 to 61617190 16 + TSS region transcription start site region 17916
Tssr17917 2 61626951 to 61626986 35 + TSS region transcription start site region 17917
Tssr17918 2 61630801 to 61630817 16 + TSS region transcription start site region 17918
Tssr17919 2 61634110 to 61634116 6 + TSS region transcription start site region 17919
Tssr17920 2 61643746 to 61643765 19 + TSS region transcription start site region 17920
Tssr17921 2 61644302 to 61644314 12 + TSS region transcription start site region 17921
Tssr17922 2 61649829 to 61649848 19 + TSS region transcription start site region 17922
Tssr17923 2 61649963 to 61649995 32 + TSS region transcription start site region 17923
Tssr17924 2 61650086 to 61650098 12 + TSS region transcription start site region 17924
Tssr17925 2 61652068 to 61652074 6 + TSS region transcription start site region 17925
Tssr17926 2 61653508 to 61653520 12 + TSS region transcription start site region 17926
Tssr17927 2 61653589 to 61653614 25 + TSS region transcription start site region 17927
Cpgi11685 2 61655701 to 61657350 1649 CpG island CpG island 11685
Tssr17928 2 61660969 to 61660983 14 + TSS region transcription start site region 17928
Tssr17929 2 61660989 to 61661012 23 + TSS region transcription start site region 17929
Gm13626 2 61706893 to 61707591 698 - pseudogene predicted gene 13626
Cpgi11686 2 61711523 to 61712083 560 CpG island CpG island 11686
Psmd14 2 61711694 to 61800376 88682 + protein coding gene proteasome (prosome, macropain) 26S subunit, non-ATPase, 14
Tssr17930 2 61711704 to 61711786 82 + TSS region transcription start site region 17930
Tssr17931 2 61711787 to 61711812 25 + TSS region transcription start site region 17931
Tssr17932 2 61711818 to 61711832 14 + TSS region transcription start site region 17932
Tssr17933 2 61727028 to 61727050 22 + TSS region transcription start site region 17933
Tssr24252 2 61747539 to 61747558 19 - TSS region transcription start site region 24252
Tssr17934 2 61752361 to 61752365 4 + TSS region transcription start site region 17934
Gm22403 2 61762386 to 61762469 83 - miRNA gene predicted gene, 22403
Tssr17935 2 61776663 to 61776691 28 + TSS region transcription start site region 17935
Gm25966 2 61798180 to 61798296 116 + rRNA gene predicted gene, 25966
Tbr1 2 61802930 to 61814114 11184 + protein coding gene T-box brain gene 1
Tssr17936 2 61804501 to 61804538 37 + TSS region transcription start site region 17936
Tssr17937 2 61804574 to 61804627 53 + TSS region transcription start site region 17937
Tssr17938 2 61804638 to 61804645 7 + TSS region transcription start site region 17938
Tssr17939 2 61804686 to 61804701 15 + TSS region transcription start site region 17939
Tssr17940 2 61804757 to 61804766 9 + TSS region transcription start site region 17940
Tssr505 2 61804777 to 61804787 10 + TSS region transcription start site region 505
Tssr17941 2 61804887 to 61804906 19 + TSS region transcription start site region 17941
Cpgi11687 2 61804892 to 61805911 1019 CpG island CpG island 11687
Tssr17942 2 61804976 to 61804996 20 + TSS region transcription start site region 17942
Tssr17943 2 61805024 to 61805038 14 + TSS region transcription start site region 17943
Tssr17944 2 61805040 to 61805053 13 + TSS region transcription start site region 17944
Cpgi11688 2 61807118 to 61807486 368 CpG island CpG island 11688
Cpgi11689 2 61811237 to 61812578 1341 CpG island CpG island 11689
Tssr17945 2 61812506 to 61812517 11 + TSS region transcription start site region 17945
Tssr17946 2 61812556 to 61812575 19 + TSS region transcription start site region 17946
Tssr17947 2 61812944 to 61812960 16 + TSS region transcription start site region 17947
Cpgi11690 2 61815012 to 61816317 1305 CpG island CpG island 11690
Gm39837 2 61905380 to 61925936 20556 + lncRNA gene predicted gene, 39837
Gm13555 2 61970354 to 61970672 318 - pseudogene predicted gene 13555
D2Mit516 2 62021247 to 62021362 115 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology-516
Tssr17948 2 62046491 to 62046505 14 + TSS region transcription start site region 17948
Tssr17949 2 62046511 to 62046571 60 + TSS region transcription start site region 17949
Slc4a10 2 62046515 to 62326743 280228 + protein coding gene solute carrier family 4, sodium bicarbonate cotransporter-like, member 10
Tssr17950 2 62046580 to 62046593 13 + TSS region transcription start site region 17950
Tssr506 2 62046598 to 62046611 13 + TSS region transcription start site region 506
Tssr17951 2 62046614 to 62046621 7 + TSS region transcription start site region 17951
Tssr17952 2 62046623 to 62046634 11 + TSS region transcription start site region 17952
Vclq1 2 137000000 to 62000000 -75000000 QTL curvilinear velocity QTL 1