Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:60647039-62517050

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198 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Itgb6 2 60598292 to 60722603 124311 - protein coding gene integrin beta 6
Tssr24207 2 60673644 to 60673653 9 - TSS region transcription start site region 24207
Tssr24208 2 60673654 to 60673731 77 - TSS region transcription start site region 24208
D2Mit34 2 60688784 to 60688922 138 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 34
Cia4 2 60690268 to 60690412 144 QTL collagen induced arthritis QTL 4
D2Mit61 2 60690268 to 60690412 144 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 61
Ap2q 2 60690268 to 60690412 144 QTL alcohol preference 2 QTL
Cia2 2 60690268 to 60690412 144 QTL collagen induced arthritis QTL 2
Pitm1 2 60690268 to 60690412 144 QTL prion incubation time 1
Pbwg1.5 2 60690268 to 60690412 144 QTL postnatal body weight growth 1.5
Gm33436 2 60692240 to 60717713 25473 + lncRNA gene predicted gene, 33436
Tssr24209 2 60700121 to 60700125 4 - TSS region transcription start site region 24209
Tssr24210 2 60705566 to 60705590 24 - TSS region transcription start site region 24210
Tssr24211 2 60705595 to 60705609 14 - TSS region transcription start site region 24211
Cpgi11681 2 60717473 to 60717678 205 CpG island CpG island 11681
Tssr24212 2 60722531 to 60722542 11 - TSS region transcription start site region 24212
Tssr24213 2 60722636 to 60722657 21 - TSS region transcription start site region 24213
Tssr24214 2 60722670 to 60722671 1 - TSS region transcription start site region 24214
Rbms1 2 60750193 to 60963192 212999 - protein coding gene RNA binding motif, single stranded interacting protein 1
Tssr24215 2 60750593 to 60750613 20 - TSS region transcription start site region 24215
Tssr24216 2 60751653 to 60751680 27 - TSS region transcription start site region 24216
Tssr24217 2 60751791 to 60751814 23 - TSS region transcription start site region 24217
Tssr24218 2 60751888 to 60751903 15 - TSS region transcription start site region 24218
Tssr24219 2 60752935 to 60752953 18 - TSS region transcription start site region 24219
Tssr24220 2 60752956 to 60752974 18 - TSS region transcription start site region 24220
Tssr24221 2 60761291 to 60761309 18 - TSS region transcription start site region 24221
Tssr24222 2 60763280 to 60763293 13 - TSS region transcription start site region 24222
Tssr24223 2 60780935 to 60780947 12 - TSS region transcription start site region 24223
Tssr24224 2 60781895 to 60781915 20 - TSS region transcription start site region 24224
Tssr24225 2 60807412 to 60807426 14 - TSS region transcription start site region 24225
Tssr24226 2 60824929 to 60824948 19 - TSS region transcription start site region 24226
Tssr24227 2 60842332 to 60842349 17 - TSS region transcription start site region 24227
Tssr17889 2 60842371 to 60842422 51 + TSS region transcription start site region 17889
Tssr24228 2 60842436 to 60842463 27 - TSS region transcription start site region 24228
Tssr24229 2 60845764 to 60845768 4 - TSS region transcription start site region 24229
Cpgi11682 2 60880815 to 60881894 1079 CpG island CpG island 11682
Tssr24230 2 60881184 to 60881206 22 - TSS region transcription start site region 24230
Tssr24231 2 60881271 to 60881286 15 - TSS region transcription start site region 24231
Tssr24232 2 60881297 to 60881316 19 - TSS region transcription start site region 24232
Tssr24233 2 60881334 to 60881354 20 - TSS region transcription start site region 24233
Tssr24234 2 60881360 to 60881491 131 - TSS region transcription start site region 24234
Tssr24235 2 60883890 to 60883939 49 - TSS region transcription start site region 24235
Tssr24236 2 60889020 to 60889050 30 - TSS region transcription start site region 24236
Tssr17890 2 60901945 to 60901967 22 + TSS region transcription start site region 17890
Tssr24237 2 60902762 to 60902767 5 - TSS region transcription start site region 24237
Tssr24238 2 60902834 to 60902840 6 - TSS region transcription start site region 24238
6030432P03Rik 2 60905205 to 60908822 3617 unclassified gene RIKEN cDNA 6030432P03 gene
Tssr24239 2 60905374 to 60905377 3 - TSS region transcription start site region 24239
Tssr24240 2 60916485 to 60916492 7 - TSS region transcription start site region 24240
Tssr17891 2 60921203 to 60921207 4 + TSS region transcription start site region 17891
Tssr24241 2 60924635 to 60924643 8 - TSS region transcription start site region 24241
Tssr24242 2 60937855 to 60937868 13 - TSS region transcription start site region 24242
Tssr24243 2 60948270 to 60948281 11 - TSS region transcription start site region 24243
Cpgi11683 2 60962029 to 60963440 1411 CpG island CpG island 11683
Tssr24244 2 60962801 to 60962821 20 - TSS region transcription start site region 24244
Tssr24245 2 60962857 to 60962926 69 - TSS region transcription start site region 24245
Tssr24246 2 60963095 to 60963104 9 - TSS region transcription start site region 24246
Tssr24247 2 60963121 to 60963132 11 - TSS region transcription start site region 24247
Tssr24248 2 60963137 to 60963169 32 - TSS region transcription start site region 24248
Tssr24249 2 60963196 to 60963251 55 - TSS region transcription start site region 24249
Tssr24250 2 60963264 to 60963271 7 - TSS region transcription start site region 24250
Gm13582 2 60964376 to 60975151 10775 - lincRNA gene predicted gene 13582
Gm33647 2 60968923 to 60986577 17654 + lncRNA gene predicted gene, 33647
Tssr17892 2 60972374 to 60972384 10 + TSS region transcription start site region 17892
Tssr17893 2 60972393 to 60972405 12 + TSS region transcription start site region 17893
Gm13579 2 61030351 to 61030970 619 - pseudogene predicted gene 13579
Gm39833 2 61127636 to 61159954 32318 + lncRNA gene predicted gene, 39833
Gm13581 2 61224792 to 61225082 290 + pseudogene predicted gene 13581
Gm26422 2 61280278 to 61280409 131 + snoRNA gene predicted gene, 26422
Gm33702 2 61340519 to 61358550 18031 - lncRNA gene predicted gene, 33702
Gm39834 2 61360009 to 61370528 10519 - lncRNA gene predicted gene, 39834
Lymph5 2 61368673 to 61368673 0 QTL lymphocyte differential 5
Gm39835 2 61449254 to 61452070 2816 - lncRNA gene predicted gene, 39835
Gm33753 2 61452942 to 61454092 1150 + lncRNA gene predicted gene, 33753
Gm18844 2 61482564 to 61483960 1396 - pseudogene predicted gene, 18844
Gm22338 2 61492766 to 61492894 128 + snoRNA gene predicted gene, 22338
Tssr17894 2 61530570 to 61530586 16 + TSS region transcription start site region 17894
Tssr17895 2 61533482 to 61533499 17 + TSS region transcription start site region 17895
Gm33841 2 61533663 to 61541262 7599 + lncRNA gene predicted gene, 33841
Tssr17896 2 61578534 to 61578540 6 + TSS region transcription start site region 17896
Tssr17897 2 61578549 to 61578617 68 + TSS region transcription start site region 17897
Tank 2 61578585 to 61654171 75586 + protein coding gene TRAF family member-associated Nf-kappa B activator
Tssr17898 2 61578990 to 61578999 9 + TSS region transcription start site region 17898
Tssr17899 2 61582039 to 61582050 11 + TSS region transcription start site region 17899
Tssr17900 2 61582155 to 61582173 18 + TSS region transcription start site region 17900
Tssr17901 2 61587720 to 61587724 4 + TSS region transcription start site region 17901
Tssr17902 2 61589497 to 61589509 12 + TSS region transcription start site region 17902
Tssr17903 2 61590171 to 61590179 8 + TSS region transcription start site region 17903
Cpgi11684 2 61593019 to 61593764 745 CpG island CpG island 11684
Tssr17904 2 61593091 to 61593102 11 + TSS region transcription start site region 17904
Tssr17905 2 61593112 to 61593123 11 + TSS region transcription start site region 17905
Tssr17906 2 61593125 to 61593175 50 + TSS region transcription start site region 17906
Tssr17907 2 61593423 to 61593444 21 + TSS region transcription start site region 17907
Tssr24251 2 61593572 to 61593613 41 - TSS region transcription start site region 24251
Tssr17908 2 61593740 to 61593749 9 + TSS region transcription start site region 17908
Tssr17909 2 61595099 to 61595110 11 + TSS region transcription start site region 17909
Tssr17910 2 61595481 to 61595511 30 + TSS region transcription start site region 17910
Tssr17911 2 61595881 to 61595885 4 + TSS region transcription start site region 17911
Tssr17912 2 61604450 to 61604469 19 + TSS region transcription start site region 17912
Tssr17913 2 61608954 to 61608957 3 + TSS region transcription start site region 17913
Tssr17914 2 61616980 to 61617003 23 + TSS region transcription start site region 17914
Tssr17915 2 61617148 to 61617161 13 + TSS region transcription start site region 17915
Tssr17916 2 61617174 to 61617190 16 + TSS region transcription start site region 17916
Tssr17917 2 61626951 to 61626986 35 + TSS region transcription start site region 17917
Tssr17918 2 61630801 to 61630817 16 + TSS region transcription start site region 17918
Tssr17919 2 61634110 to 61634116 6 + TSS region transcription start site region 17919
Tssr17920 2 61643746 to 61643765 19 + TSS region transcription start site region 17920
Tssr17921 2 61644302 to 61644314 12 + TSS region transcription start site region 17921
Tssr17922 2 61649829 to 61649848 19 + TSS region transcription start site region 17922
Tssr17923 2 61649963 to 61649995 32 + TSS region transcription start site region 17923
Tssr17924 2 61650086 to 61650098 12 + TSS region transcription start site region 17924
Tssr17925 2 61652068 to 61652074 6 + TSS region transcription start site region 17925
Tssr17926 2 61653508 to 61653520 12 + TSS region transcription start site region 17926
Tssr17927 2 61653589 to 61653614 25 + TSS region transcription start site region 17927
Cpgi11685 2 61655701 to 61657350 1649 CpG island CpG island 11685
Tssr17928 2 61660969 to 61660983 14 + TSS region transcription start site region 17928
Tssr17929 2 61660989 to 61661012 23 + TSS region transcription start site region 17929
Gm13626 2 61706893 to 61707591 698 - pseudogene predicted gene 13626
Cpgi11686 2 61711523 to 61712083 560 CpG island CpG island 11686
Psmd14 2 61711694 to 61800376 88682 + protein coding gene proteasome (prosome, macropain) 26S subunit, non-ATPase, 14
Tssr17930 2 61711704 to 61711786 82 + TSS region transcription start site region 17930
Tssr17931 2 61711787 to 61711812 25 + TSS region transcription start site region 17931
Tssr17932 2 61711818 to 61711832 14 + TSS region transcription start site region 17932
Tssr17933 2 61727028 to 61727050 22 + TSS region transcription start site region 17933
Tssr24252 2 61747539 to 61747558 19 - TSS region transcription start site region 24252
Tssr17934 2 61752361 to 61752365 4 + TSS region transcription start site region 17934
Gm22403 2 61762386 to 61762469 83 - miRNA gene predicted gene, 22403
Tssr17935 2 61776663 to 61776691 28 + TSS region transcription start site region 17935
Gm25966 2 61798180 to 61798296 116 + rRNA gene predicted gene, 25966
Tbr1 2 61802930 to 61814114 11184 + protein coding gene T-box brain gene 1
Tssr17936 2 61804501 to 61804538 37 + TSS region transcription start site region 17936
Tssr17937 2 61804574 to 61804627 53 + TSS region transcription start site region 17937
Tssr17938 2 61804638 to 61804645 7 + TSS region transcription start site region 17938
Tssr17939 2 61804686 to 61804701 15 + TSS region transcription start site region 17939
Tssr17940 2 61804757 to 61804766 9 + TSS region transcription start site region 17940
Tssr505 2 61804777 to 61804787 10 + TSS region transcription start site region 505
Tssr17941 2 61804887 to 61804906 19 + TSS region transcription start site region 17941
Cpgi11687 2 61804892 to 61805911 1019 CpG island CpG island 11687
Tssr17942 2 61804976 to 61804996 20 + TSS region transcription start site region 17942
Tssr17943 2 61805024 to 61805038 14 + TSS region transcription start site region 17943
Tssr17944 2 61805040 to 61805053 13 + TSS region transcription start site region 17944
Cpgi11688 2 61807118 to 61807486 368 CpG island CpG island 11688
Cpgi11689 2 61811237 to 61812578 1341 CpG island CpG island 11689
Tssr17945 2 61812506 to 61812517 11 + TSS region transcription start site region 17945
Tssr17946 2 61812556 to 61812575 19 + TSS region transcription start site region 17946
Tssr17947 2 61812944 to 61812960 16 + TSS region transcription start site region 17947
Cpgi11690 2 61815012 to 61816317 1305 CpG island CpG island 11690
Gm39837 2 61905380 to 61925936 20556 + lncRNA gene predicted gene, 39837
Gm13555 2 61970354 to 61970672 318 - pseudogene predicted gene 13555
D2Mit516 2 62021247 to 62021362 115 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology-516
Tssr17948 2 62046491 to 62046505 14 + TSS region transcription start site region 17948
Tssr17949 2 62046511 to 62046571 60 + TSS region transcription start site region 17949
Slc4a10 2 62046515 to 62326743 280228 + protein coding gene solute carrier family 4, sodium bicarbonate cotransporter-like, member 10
Tssr17950 2 62046580 to 62046593 13 + TSS region transcription start site region 17950
Tssr506 2 62046598 to 62046611 13 + TSS region transcription start site region 506
Tssr17951 2 62046614 to 62046621 7 + TSS region transcription start site region 17951
Tssr17952 2 62046623 to 62046634 11 + TSS region transcription start site region 17952
Tssr17953 2 62147771 to 62147786 15 + TSS region transcription start site region 17953
Tssr17954 2 62147802 to 62147826 24 + TSS region transcription start site region 17954
Tssr17955 2 62147828 to 62147873 45 + TSS region transcription start site region 17955
Tssr17956 2 62147973 to 62147976 3 + TSS region transcription start site region 17956
Tssr17957 2 62325937 to 62325939 2 + TSS region transcription start site region 17957
Dpp4 2 62330073 to 62412231 82158 - protein coding gene dipeptidylpeptidase 4
Tssr507 2 62343522 to 62343537 15 - TSS region transcription start site region 507
Tssr24253 2 62343633 to 62343653 20 - TSS region transcription start site region 24253
Tssr24254 2 62343657 to 62343668 11 - TSS region transcription start site region 24254
Tssr24255 2 62343670 to 62343701 31 - TSS region transcription start site region 24255
Tssr24256 2 62343728 to 62343739 11 - TSS region transcription start site region 24256
Tssr24257 2 62343817 to 62343831 14 - TSS region transcription start site region 24257
Tssr24258 2 62343967 to 62343974 7 - TSS region transcription start site region 24258
Tssr24259 2 62352132 to 62352177 45 - TSS region transcription start site region 24259
Tssr24260 2 62394933 to 62394940 7 - TSS region transcription start site region 24260
Tssr17958 2 62395146 to 62395169 23 + TSS region transcription start site region 17958
Tssr17959 2 62395186 to 62395197 11 + TSS region transcription start site region 17959
Tssr17960 2 62397943 to 62397948 5 + TSS region transcription start site region 17960
Tssr17961 2 62409079 to 62409085 6 + TSS region transcription start site region 17961
Cpgi11691 2 62411246 to 62412125 879 CpG island CpG island 11691
Tssr24261 2 62411294 to 62411336 42 - TSS region transcription start site region 24261
Tssr24262 2 62411695 to 62411706 11 - TSS region transcription start site region 24262
Tssr24263 2 62411806 to 62411822 16 - TSS region transcription start site region 24263
Tssr24264 2 62411838 to 62411864 26 - TSS region transcription start site region 24264
Tssr24265 2 62411870 to 62411910 40 - TSS region transcription start site region 24265
Tssr24266 2 62411957 to 62411974 17 - TSS region transcription start site region 24266
Tssr24267 2 62411991 to 62412023 32 - TSS region transcription start site region 24267
Tssr24268 2 62412172 to 62412183 11 - TSS region transcription start site region 24268
Tssr508 2 62412197 to 62412206 9 - TSS region transcription start site region 508
Tssr24269 2 62412219 to 62412234 15 - TSS region transcription start site region 24269
Tssr24270 2 62412300 to 62412309 9 - TSS region transcription start site region 24270
Tssr24271 2 62412316 to 62412335 19 - TSS region transcription start site region 24271
Gm13565 2 62436880 to 62441142 4262 - lincRNA gene predicted gene 13565
Gm13564 2 62452936 to 62456648 3712 - lincRNA gene predicted gene 13564
Gm13561 2 62455105 to 62468917 13812 + antisense lncRNA gene predicted gene 13561
Gcg 2 62474530 to 62483650 9120 - protein coding gene glucagon
Tssr24272 2 62480490 to 62480499 9 - TSS region transcription start site region 24272
Tssr24273 2 62483637 to 62483653 16 - TSS region transcription start site region 24273
Fap 2 62500943 to 62574075 73132 - protein coding gene fibroblast activation protein
Trmq3 2 119525037 to 60690268 -58834769 QTL T cell ratio modifier QTL 3
Vclq1 2 137000000 to 62000000 -75000000 QTL curvilinear velocity QTL 1