Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:60360764-61330768

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91 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ly75 2 60293760 to 60383231 89471 - protein coding gene lymphocyte antigen 75
Gm13571 2 60338188 to 60371234 33046 + antisense lncRNA gene predicted gene 13571
Tssr17886 2 60366482 to 60366494 12 + TSS region transcription start site region 17886
Tssr17887 2 60367614 to 60367632 18 + TSS region transcription start site region 17887
Tssr24199 2 60370341 to 60370344 3 - TSS region transcription start site region 24199
Tssr17888 2 60371255 to 60371259 4 + TSS region transcription start site region 17888
Cpgi11678 2 60375928 to 60376079 151 CpG island CpG island 11678
Cpgi11679 2 60382968 to 60383596 628 CpG island CpG island 11679
Tssr24200 2 60383235 to 60383290 55 - TSS region transcription start site region 24200
Tssr24201 2 60383296 to 60383303 7 - TSS region transcription start site region 24201
Tssr24202 2 60383308 to 60383314 6 - TSS region transcription start site region 24202
Gm13580 2 60411525 to 60412574 1049 + antisense lncRNA gene predicted gene 13580
Pla2r1 2 60417543 to 60553308 135765 - protein coding gene phospholipase A2 receptor 1
Gm13583 2 60550757 to 60553923 3166 + antisense lncRNA gene predicted gene 13583
Cpgi11680 2 60552869 to 60553438 569 CpG island CpG island 11680
Tssr24203 2 60553250 to 60553263 13 - TSS region transcription start site region 24203
Tssr24204 2 60553277 to 60553302 25 - TSS region transcription start site region 24204
Tssr24205 2 60553303 to 60553317 14 - TSS region transcription start site region 24205
Gm13566 2 60577537 to 60578678 1141 + pseudogene predicted gene 13566
Gm13567 2 60596048 to 60596294 246 - pseudogene predicted gene 13567
Itgb6 2 60598292 to 60722603 124311 - protein coding gene integrin beta 6
Tssr24206 2 60599908 to 60599913 5 - TSS region transcription start site region 24206
Tssr24207 2 60673644 to 60673653 9 - TSS region transcription start site region 24207
Tssr24208 2 60673654 to 60673731 77 - TSS region transcription start site region 24208
D2Mit34 2 60688784 to 60688922 138 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 34
D2Mit61 2 60690268 to 60690412 144 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 61
Pitm1 2 60690268 to 60690412 144 QTL prion incubation time 1
Cia4 2 60690268 to 60690412 144 QTL collagen induced arthritis QTL 4
Cia2 2 60690268 to 60690412 144 QTL collagen induced arthritis QTL 2
Ap2q 2 60690268 to 60690412 144 QTL alcohol preference 2 QTL
Pbwg1.5 2 60690268 to 60690412 144 QTL postnatal body weight growth 1.5
Gm33436 2 60692240 to 60717713 25473 + lncRNA gene predicted gene, 33436
Tssr24209 2 60700121 to 60700125 4 - TSS region transcription start site region 24209
Tssr24210 2 60705566 to 60705590 24 - TSS region transcription start site region 24210
Tssr24211 2 60705595 to 60705609 14 - TSS region transcription start site region 24211
Cpgi11681 2 60717473 to 60717678 205 CpG island CpG island 11681
Tssr24212 2 60722531 to 60722542 11 - TSS region transcription start site region 24212
Tssr24213 2 60722636 to 60722657 21 - TSS region transcription start site region 24213
Tssr24214 2 60722670 to 60722671 1 - TSS region transcription start site region 24214
Rbms1 2 60750193 to 60963192 212999 - protein coding gene RNA binding motif, single stranded interacting protein 1
Tssr24215 2 60750593 to 60750613 20 - TSS region transcription start site region 24215
Tssr24216 2 60751653 to 60751680 27 - TSS region transcription start site region 24216
Tssr24217 2 60751791 to 60751814 23 - TSS region transcription start site region 24217
Tssr24218 2 60751888 to 60751903 15 - TSS region transcription start site region 24218
Tssr24219 2 60752935 to 60752953 18 - TSS region transcription start site region 24219
Tssr24220 2 60752956 to 60752974 18 - TSS region transcription start site region 24220
Tssr24221 2 60761291 to 60761309 18 - TSS region transcription start site region 24221
Tssr24222 2 60763280 to 60763293 13 - TSS region transcription start site region 24222
Tssr24223 2 60780935 to 60780947 12 - TSS region transcription start site region 24223
Tssr24224 2 60781895 to 60781915 20 - TSS region transcription start site region 24224
Tssr24225 2 60807412 to 60807426 14 - TSS region transcription start site region 24225
Tssr24226 2 60824929 to 60824948 19 - TSS region transcription start site region 24226
Tssr24227 2 60842332 to 60842349 17 - TSS region transcription start site region 24227
Tssr17889 2 60842371 to 60842422 51 + TSS region transcription start site region 17889
Tssr24228 2 60842436 to 60842463 27 - TSS region transcription start site region 24228
Tssr24229 2 60845764 to 60845768 4 - TSS region transcription start site region 24229
Cpgi11682 2 60880815 to 60881894 1079 CpG island CpG island 11682
Tssr24230 2 60881184 to 60881206 22 - TSS region transcription start site region 24230
Tssr24231 2 60881271 to 60881286 15 - TSS region transcription start site region 24231
Tssr24232 2 60881297 to 60881316 19 - TSS region transcription start site region 24232
Tssr24233 2 60881334 to 60881354 20 - TSS region transcription start site region 24233
Tssr24234 2 60881360 to 60881491 131 - TSS region transcription start site region 24234
Tssr24235 2 60883890 to 60883939 49 - TSS region transcription start site region 24235
Tssr24236 2 60889020 to 60889050 30 - TSS region transcription start site region 24236
Tssr17890 2 60901945 to 60901967 22 + TSS region transcription start site region 17890
Tssr24237 2 60902762 to 60902767 5 - TSS region transcription start site region 24237
Tssr24238 2 60902834 to 60902840 6 - TSS region transcription start site region 24238
6030432P03Rik 2 60905205 to 60908822 3617 unclassified gene RIKEN cDNA 6030432P03 gene
Tssr24239 2 60905374 to 60905377 3 - TSS region transcription start site region 24239
Tssr24240 2 60916485 to 60916492 7 - TSS region transcription start site region 24240
Tssr17891 2 60921203 to 60921207 4 + TSS region transcription start site region 17891
Tssr24241 2 60924635 to 60924643 8 - TSS region transcription start site region 24241
Tssr24242 2 60937855 to 60937868 13 - TSS region transcription start site region 24242
Tssr24243 2 60948270 to 60948281 11 - TSS region transcription start site region 24243
Cpgi11683 2 60962029 to 60963440 1411 CpG island CpG island 11683
Tssr24244 2 60962801 to 60962821 20 - TSS region transcription start site region 24244
Tssr24245 2 60962857 to 60962926 69 - TSS region transcription start site region 24245
Tssr24246 2 60963095 to 60963104 9 - TSS region transcription start site region 24246
Tssr24247 2 60963121 to 60963132 11 - TSS region transcription start site region 24247
Tssr24248 2 60963137 to 60963169 32 - TSS region transcription start site region 24248
Tssr24249 2 60963196 to 60963251 55 - TSS region transcription start site region 24249
Tssr24250 2 60963264 to 60963271 7 - TSS region transcription start site region 24250
Gm13582 2 60964376 to 60975151 10775 - lincRNA gene predicted gene 13582
Gm33647 2 60968923 to 60986577 17654 + lncRNA gene predicted gene, 33647
Tssr17892 2 60972374 to 60972384 10 + TSS region transcription start site region 17892
Tssr17893 2 60972393 to 60972405 12 + TSS region transcription start site region 17893
Gm13579 2 61030351 to 61030970 619 - pseudogene predicted gene 13579
Gm39833 2 61127636 to 61159954 32318 + lncRNA gene predicted gene, 39833
Gm13581 2 61224792 to 61225082 290 + pseudogene predicted gene 13581
Gm26422 2 61280278 to 61280409 131 + snoRNA gene predicted gene, 26422
Trmq3 2 119525037 to 60690268 -58834769 QTL T cell ratio modifier QTL 3