Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:59583781-60984395

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178 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr17860 2 59598562 to 59598598 36 + TSS region transcription start site region 17860
Cpgi11670 2 59611619 to 59613373 1754 CpG island CpG island 11670
Tssr17861 2 59612034 to 59612109 75 + TSS region transcription start site region 17861
Tanc1 2 59612042 to 59846149 234107 + protein coding gene tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1
Tssr17862 2 59623000 to 59623004 4 + TSS region transcription start site region 17862
Tssr17863 2 59630066 to 59630075 9 + TSS region transcription start site region 17863
Tssr17864 2 59634299 to 59634303 4 + TSS region transcription start site region 17864
Gm32976 2 59638158 to 59639148 990 - pseudogene predicted gene, 32976
Tssr17865 2 59640367 to 59640371 4 + TSS region transcription start site region 17865
Tssr17866 2 59645494 to 59645497 3 + TSS region transcription start site region 17866
5830418L09Rik 2 59650024 to 59653246 3222 unclassified gene RIKEN cDNA 5830418L09 gene
Tssr17867 2 59656512 to 59656516 4 + TSS region transcription start site region 17867
6720460K10Rik 2 59683730 to 59684788 1058 unclassified gene RIKEN cDNA 6720460K10 gene
Tssr17868 2 59776029 to 59776054 25 + TSS region transcription start site region 17868
Tssr17869 2 59776067 to 59776086 19 + TSS region transcription start site region 17869
Tssr17870 2 59779488 to 59779506 18 + TSS region transcription start site region 17870
Tssr17871 2 59779699 to 59779721 22 + TSS region transcription start site region 17871
Tssr17872 2 59779727 to 59779743 16 + TSS region transcription start site region 17872
D2Mit181 2 59788588 to 59788729 141 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 181
Cpgi11671 2 59799619 to 59799868 249 CpG island CpG island 11671
Tssr17873 2 59806154 to 59806158 4 + TSS region transcription start site region 17873
Tssr17874 2 59811724 to 59811733 9 + TSS region transcription start site region 17874
Tssr17875 2 59811944 to 59811973 29 + TSS region transcription start site region 17875
Tssr17876 2 59812014 to 59812041 27 + TSS region transcription start site region 17876
Cpgi11672 2 59843256 to 59843576 320 CpG island CpG island 11672
Wdsub1 2 59852364 to 59882591 30227 - protein coding gene WD repeat, SAM and U-box domain containing 1
Cpgi11673 2 59878149 to 59878525 376 CpG island CpG island 11673
Cpgi11674 2 59882177 to 59882735 558 CpG island CpG island 11674
Tssr24161 2 59882497 to 59882513 16 - TSS region transcription start site region 24161
Tssr24162 2 59882541 to 59882555 14 - TSS region transcription start site region 24162
Tssr24163 2 59882556 to 59882612 56 - TSS region transcription start site region 24163
Baz2b 2 59899363 to 60209839 310476 - protein coding gene bromodomain adjacent to zinc finger domain, 2B
Tssr24164 2 59920407 to 59920421 14 - TSS region transcription start site region 24164
Tssr24165 2 59943027 to 59943039 12 - TSS region transcription start site region 24165
Tssr24166 2 59948155 to 59948192 37 - TSS region transcription start site region 24166
Tssr24167 2 59948221 to 59948250 29 - TSS region transcription start site region 24167
Tssr24168 2 59952855 to 59952866 11 - TSS region transcription start site region 24168
Tssr24169 2 59953740 to 59953751 11 - TSS region transcription start site region 24169
Tssr24170 2 59953760 to 59953767 7 - TSS region transcription start site region 24170
Tssr24171 2 59979677 to 59979681 4 - TSS region transcription start site region 24171
Gm13574 2 59991951 to 59992344 393 - pseudogene predicted gene 13574
Tssr24172 2 60004735 to 60004739 4 - TSS region transcription start site region 24172
Tssr24173 2 60010564 to 60010566 2 - TSS region transcription start site region 24173
Gm13572 2 60037141 to 60038837 1696 + lincRNA gene predicted gene 13572
Tssr24174 2 60037348 to 60037398 50 - TSS region transcription start site region 24174
Tssr24175 2 60049294 to 60049297 3 - TSS region transcription start site region 24175
Tssr17877 2 60072011 to 60072047 36 + TSS region transcription start site region 17877
Gm13570 2 60098406 to 60098714 308 - pseudogene predicted gene 13570
Tssr24176 2 60098728 to 60098740 12 - TSS region transcription start site region 24176
Tssr24177 2 60098765 to 60098782 17 - TSS region transcription start site region 24177
Tssr24178 2 60108002 to 60108006 4 - TSS region transcription start site region 24178
Tssr24179 2 60113779 to 60113807 28 - TSS region transcription start site region 24179
Tssr24180 2 60118761 to 60118768 7 - TSS region transcription start site region 24180
Cpgi11675 2 60124628 to 60125711 1083 CpG island CpG island 11675
Gm13620 2 60125096 to 60125819 723 + lincRNA gene predicted gene 13620
Tssr24181 2 60125586 to 60125598 12 - TSS region transcription start site region 24181
Tssr24182 2 60125607 to 60125618 11 - TSS region transcription start site region 24182
Tssr24183 2 60125651 to 60125775 124 - TSS region transcription start site region 24183
Tssr24184 2 60125812 to 60125823 11 - TSS region transcription start site region 24184
Ldha-ps 2 60134055 to 60135049 994 + pseudogene lactate dehydrogenase A, pseudogene
Tssr17878 2 60208393 to 60208421 28 + TSS region transcription start site region 17878
Cpgi11676 2 60209237 to 60210673 1436 CpG island CpG island 11676
Tssr24185 2 60209697 to 60209708 11 - TSS region transcription start site region 24185
Tssr24186 2 60209781 to 60209816 35 - TSS region transcription start site region 24186
Tssr24187 2 60209827 to 60209871 44 - TSS region transcription start site region 24187
Tssr17879 2 60209893 to 60209966 73 + TSS region transcription start site region 17879
March7 2 60209936 to 60248385 38449 + protein coding gene membrane-associated ring finger (C3HC4) 7
Tssr24188 2 60210429 to 60210453 24 - TSS region transcription start site region 24188
Tssr24189 2 60210466 to 60210484 18 - TSS region transcription start site region 24189
Tssr24190 2 60210519 to 60210534 15 - TSS region transcription start site region 24190
Tssr17880 2 60210639 to 60210664 25 + TSS region transcription start site region 17880
Tssr17881 2 60211978 to 60211987 9 + TSS region transcription start site region 17881
Tssr17882 2 60223066 to 60223074 8 + TSS region transcription start site region 17882
3110023J12Rik 2 60232447 to 60232903 456 unclassified gene RIKEN cDNA 3110023J12 gene
Tssr17883 2 60232520 to 60232525 5 + TSS region transcription start site region 17883
Tssr17884 2 60248208 to 60248227 19 + TSS region transcription start site region 17884
Cd302 2 60251993 to 60284484 32491 - protein coding gene CD302 antigen
Tssr24191 2 60252493 to 60252494 1 - TSS region transcription start site region 24191
Tssr24192 2 60253551 to 60253565 14 - TSS region transcription start site region 24192
5730458M16Rik 2 60253663 to 60255405 1742 unclassified gene RIKEN cDNA 5730458M16 gene
Tssr24193 2 60263547 to 60263565 18 - TSS region transcription start site region 24193
Gm13573 2 60274944 to 60275574 630 - pseudogene predicted gene 13573
Tssr24194 2 60275601 to 60275603 2 - TSS region transcription start site region 24194
Cpgi11677 2 60283781 to 60284395 614 CpG island CpG island 11677
Tssr24195 2 60284098 to 60284159 61 - TSS region transcription start site region 24195
Tssr24196 2 60284209 to 60284218 9 - TSS region transcription start site region 24196
Tssr503 2 60284227 to 60284235 8 - TSS region transcription start site region 503
Tssr24197 2 60284292 to 60284301 9 - TSS region transcription start site region 24197
Tssr504 2 60284340 to 60284345 5 - TSS region transcription start site region 504
Ly75 2 60293760 to 60383231 89471 - protein coding gene lymphocyte antigen 75
Tssr24198 2 60312249 to 60312254 5 - TSS region transcription start site region 24198
Tssr17885 2 60335442 to 60335445 3 + TSS region transcription start site region 17885
Gm13571 2 60338188 to 60371234 33046 + antisense lncRNA gene predicted gene 13571
Tssr17886 2 60366482 to 60366494 12 + TSS region transcription start site region 17886
Tssr17887 2 60367614 to 60367632 18 + TSS region transcription start site region 17887
Tssr24199 2 60370341 to 60370344 3 - TSS region transcription start site region 24199
Tssr17888 2 60371255 to 60371259 4 + TSS region transcription start site region 17888
Cpgi11678 2 60375928 to 60376079 151 CpG island CpG island 11678
Cpgi11679 2 60382968 to 60383596 628 CpG island CpG island 11679
Tssr24200 2 60383235 to 60383290 55 - TSS region transcription start site region 24200
Tssr24201 2 60383296 to 60383303 7 - TSS region transcription start site region 24201
Tssr24202 2 60383308 to 60383314 6 - TSS region transcription start site region 24202
Gm13580 2 60411525 to 60412574 1049 + antisense lncRNA gene predicted gene 13580
Pla2r1 2 60417543 to 60553308 135765 - protein coding gene phospholipase A2 receptor 1
Gm13583 2 60550757 to 60553923 3166 + antisense lncRNA gene predicted gene 13583
Cpgi11680 2 60552869 to 60553438 569 CpG island CpG island 11680
Tssr24203 2 60553250 to 60553263 13 - TSS region transcription start site region 24203
Tssr24204 2 60553277 to 60553302 25 - TSS region transcription start site region 24204
Tssr24205 2 60553303 to 60553317 14 - TSS region transcription start site region 24205
Gm13566 2 60577537 to 60578678 1141 + pseudogene predicted gene 13566
Gm13567 2 60596048 to 60596294 246 - pseudogene predicted gene 13567
Itgb6 2 60598292 to 60722603 124311 - protein coding gene integrin beta 6
Tssr24206 2 60599908 to 60599913 5 - TSS region transcription start site region 24206
Tssr24207 2 60673644 to 60673653 9 - TSS region transcription start site region 24207
Tssr24208 2 60673654 to 60673731 77 - TSS region transcription start site region 24208
D2Mit34 2 60688784 to 60688922 138 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 34
Ap2q 2 60690268 to 60690412 144 QTL alcohol preference 2 QTL
Cia2 2 60690268 to 60690412 144 QTL collagen induced arthritis QTL 2
Cia4 2 60690268 to 60690412 144 QTL collagen induced arthritis QTL 4
Pbwg1.5 2 60690268 to 60690412 144 QTL postnatal body weight growth 1.5
D2Mit61 2 60690268 to 60690412 144 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 61
Pitm1 2 60690268 to 60690412 144 QTL prion incubation time 1
Gm33436 2 60692240 to 60717713 25473 + lncRNA gene predicted gene, 33436
Tssr24209 2 60700121 to 60700125 4 - TSS region transcription start site region 24209
Tssr24210 2 60705566 to 60705590 24 - TSS region transcription start site region 24210
Tssr24211 2 60705595 to 60705609 14 - TSS region transcription start site region 24211
Cpgi11681 2 60717473 to 60717678 205 CpG island CpG island 11681
Tssr24212 2 60722531 to 60722542 11 - TSS region transcription start site region 24212
Tssr24213 2 60722636 to 60722657 21 - TSS region transcription start site region 24213
Tssr24214 2 60722670 to 60722671 1 - TSS region transcription start site region 24214
Rbms1 2 60750193 to 60963192 212999 - protein coding gene RNA binding motif, single stranded interacting protein 1
Tssr24215 2 60750593 to 60750613 20 - TSS region transcription start site region 24215
Tssr24216 2 60751653 to 60751680 27 - TSS region transcription start site region 24216
Tssr24217 2 60751791 to 60751814 23 - TSS region transcription start site region 24217
Tssr24218 2 60751888 to 60751903 15 - TSS region transcription start site region 24218
Tssr24219 2 60752935 to 60752953 18 - TSS region transcription start site region 24219
Tssr24220 2 60752956 to 60752974 18 - TSS region transcription start site region 24220
Tssr24221 2 60761291 to 60761309 18 - TSS region transcription start site region 24221
Tssr24222 2 60763280 to 60763293 13 - TSS region transcription start site region 24222
Tssr24223 2 60780935 to 60780947 12 - TSS region transcription start site region 24223
Tssr24224 2 60781895 to 60781915 20 - TSS region transcription start site region 24224
Tssr24225 2 60807412 to 60807426 14 - TSS region transcription start site region 24225
Tssr24226 2 60824929 to 60824948 19 - TSS region transcription start site region 24226
Tssr24227 2 60842332 to 60842349 17 - TSS region transcription start site region 24227
Tssr17889 2 60842371 to 60842422 51 + TSS region transcription start site region 17889
Tssr24228 2 60842436 to 60842463 27 - TSS region transcription start site region 24228
Tssr24229 2 60845764 to 60845768 4 - TSS region transcription start site region 24229
Cpgi11682 2 60880815 to 60881894 1079 CpG island CpG island 11682
Tssr24230 2 60881184 to 60881206 22 - TSS region transcription start site region 24230
Tssr24231 2 60881271 to 60881286 15 - TSS region transcription start site region 24231
Tssr24232 2 60881297 to 60881316 19 - TSS region transcription start site region 24232
Tssr24233 2 60881334 to 60881354 20 - TSS region transcription start site region 24233
Tssr24234 2 60881360 to 60881491 131 - TSS region transcription start site region 24234
Tssr24235 2 60883890 to 60883939 49 - TSS region transcription start site region 24235
Tssr24236 2 60889020 to 60889050 30 - TSS region transcription start site region 24236
Tssr17890 2 60901945 to 60901967 22 + TSS region transcription start site region 17890
Tssr24237 2 60902762 to 60902767 5 - TSS region transcription start site region 24237
Tssr24238 2 60902834 to 60902840 6 - TSS region transcription start site region 24238
6030432P03Rik 2 60905205 to 60908822 3617 unclassified gene RIKEN cDNA 6030432P03 gene
Tssr24239 2 60905374 to 60905377 3 - TSS region transcription start site region 24239
Tssr24240 2 60916485 to 60916492 7 - TSS region transcription start site region 24240
Tssr17891 2 60921203 to 60921207 4 + TSS region transcription start site region 17891
Tssr24241 2 60924635 to 60924643 8 - TSS region transcription start site region 24241
Tssr24242 2 60937855 to 60937868 13 - TSS region transcription start site region 24242
Tssr24243 2 60948270 to 60948281 11 - TSS region transcription start site region 24243
Cpgi11683 2 60962029 to 60963440 1411 CpG island CpG island 11683
Tssr24244 2 60962801 to 60962821 20 - TSS region transcription start site region 24244
Tssr24245 2 60962857 to 60962926 69 - TSS region transcription start site region 24245
Tssr24246 2 60963095 to 60963104 9 - TSS region transcription start site region 24246
Tssr24247 2 60963121 to 60963132 11 - TSS region transcription start site region 24247
Tssr24248 2 60963137 to 60963169 32 - TSS region transcription start site region 24248
Tssr24249 2 60963196 to 60963251 55 - TSS region transcription start site region 24249
Tssr24250 2 60963264 to 60963271 7 - TSS region transcription start site region 24250
Gm13582 2 60964376 to 60975151 10775 - lincRNA gene predicted gene 13582
Gm33647 2 60968923 to 60986577 17654 + lncRNA gene predicted gene, 33647
Tssr17892 2 60972374 to 60972384 10 + TSS region transcription start site region 17892
Tssr17893 2 60972393 to 60972405 12 + TSS region transcription start site region 17893
Trmq3 2 119525037 to 60690268 -58834769 QTL T cell ratio modifier QTL 3