Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:59349488-60209506

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79 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pkp4 2 59160850 to 59355205 194355 + protein coding gene plakophilin 4
Tssr17854 2 59351898 to 59351905 7 + TSS region transcription start site region 17854
Tssr17855 2 59380886 to 59380888 2 + TSS region transcription start site region 17855
5330411J11Rik 2 59382493 to 59386682 4189 - lncRNA gene RIKEN cDNA 5330411J11 gene
Cpgi11669 2 59383331 to 59383592 261 CpG island CpG island 11669
Tssr17856 2 59384120 to 59384128 8 + TSS region transcription start site region 17856
Gm13551 2 59396488 to 59396917 429 + pseudogene predicted gene 13551
Gm13549 2 59398986 to 59399781 795 - pseudogene predicted gene 13549
Gm46743 2 59400738 to 59420501 19763 - lncRNA gene predicted gene, 46743
D2Mit123 2 59404418 to 59404558 140 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 123
Tssr24160 2 59470015 to 59470023 8 - TSS region transcription start site region 24160
Tssr17857 2 59471202 to 59471209 7 + TSS region transcription start site region 17857
Tssr17858 2 59484645 to 59484663 18 + TSS region transcription start site region 17858
Dapl1 2 59484653 to 59505020 20367 + protein coding gene death associated protein-like 1
Tssr17859 2 59504855 to 59504858 3 + TSS region transcription start site region 17859
Gm39831 2 59512133 to 59513260 1127 + lncRNA gene predicted gene, 39831
Gm13552 2 59564268 to 59564684 416 - pseudogene predicted gene 13552
Tssr17860 2 59598562 to 59598598 36 + TSS region transcription start site region 17860
Cpgi11670 2 59611619 to 59613373 1754 CpG island CpG island 11670
Tssr17861 2 59612034 to 59612109 75 + TSS region transcription start site region 17861
Tanc1 2 59612042 to 59846149 234107 + protein coding gene tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1
Tssr17862 2 59623000 to 59623004 4 + TSS region transcription start site region 17862
Tssr17863 2 59630066 to 59630075 9 + TSS region transcription start site region 17863
Tssr17864 2 59634299 to 59634303 4 + TSS region transcription start site region 17864
Gm32976 2 59638158 to 59639148 990 - pseudogene predicted gene, 32976
Tssr17865 2 59640367 to 59640371 4 + TSS region transcription start site region 17865
Tssr17866 2 59645494 to 59645497 3 + TSS region transcription start site region 17866
5830418L09Rik 2 59650024 to 59653246 3222 unclassified gene RIKEN cDNA 5830418L09 gene
Tssr17867 2 59656512 to 59656516 4 + TSS region transcription start site region 17867
6720460K10Rik 2 59683730 to 59684788 1058 unclassified gene RIKEN cDNA 6720460K10 gene
Tssr17868 2 59776029 to 59776054 25 + TSS region transcription start site region 17868
Tssr17869 2 59776067 to 59776086 19 + TSS region transcription start site region 17869
Tssr17870 2 59779488 to 59779506 18 + TSS region transcription start site region 17870
Tssr17871 2 59779699 to 59779721 22 + TSS region transcription start site region 17871
Tssr17872 2 59779727 to 59779743 16 + TSS region transcription start site region 17872
D2Mit181 2 59788588 to 59788729 141 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 181
Cpgi11671 2 59799619 to 59799868 249 CpG island CpG island 11671
Tssr17873 2 59806154 to 59806158 4 + TSS region transcription start site region 17873
Tssr17874 2 59811724 to 59811733 9 + TSS region transcription start site region 17874
Tssr17875 2 59811944 to 59811973 29 + TSS region transcription start site region 17875
Tssr17876 2 59812014 to 59812041 27 + TSS region transcription start site region 17876
Cpgi11672 2 59843256 to 59843576 320 CpG island CpG island 11672
Wdsub1 2 59852364 to 59882591 30227 - protein coding gene WD repeat, SAM and U-box domain containing 1
Cpgi11673 2 59878149 to 59878525 376 CpG island CpG island 11673
Cpgi11674 2 59882177 to 59882735 558 CpG island CpG island 11674
Tssr24161 2 59882497 to 59882513 16 - TSS region transcription start site region 24161
Tssr24162 2 59882541 to 59882555 14 - TSS region transcription start site region 24162
Tssr24163 2 59882556 to 59882612 56 - TSS region transcription start site region 24163
Baz2b 2 59899363 to 60209839 310476 - protein coding gene bromodomain adjacent to zinc finger domain, 2B
Tssr24164 2 59920407 to 59920421 14 - TSS region transcription start site region 24164
Tssr24165 2 59943027 to 59943039 12 - TSS region transcription start site region 24165
Tssr24166 2 59948155 to 59948192 37 - TSS region transcription start site region 24166
Tssr24167 2 59948221 to 59948250 29 - TSS region transcription start site region 24167
Tssr24168 2 59952855 to 59952866 11 - TSS region transcription start site region 24168
Tssr24169 2 59953740 to 59953751 11 - TSS region transcription start site region 24169
Tssr24170 2 59953760 to 59953767 7 - TSS region transcription start site region 24170
Tssr24171 2 59979677 to 59979681 4 - TSS region transcription start site region 24171
Gm13574 2 59991951 to 59992344 393 - pseudogene predicted gene 13574
Tssr24172 2 60004735 to 60004739 4 - TSS region transcription start site region 24172
Tssr24173 2 60010564 to 60010566 2 - TSS region transcription start site region 24173
Gm13572 2 60037141 to 60038837 1696 + lincRNA gene predicted gene 13572
Tssr24174 2 60037348 to 60037398 50 - TSS region transcription start site region 24174
Tssr24175 2 60049294 to 60049297 3 - TSS region transcription start site region 24175
Tssr17877 2 60072011 to 60072047 36 + TSS region transcription start site region 17877
Gm13570 2 60098406 to 60098714 308 - pseudogene predicted gene 13570
Tssr24176 2 60098728 to 60098740 12 - TSS region transcription start site region 24176
Tssr24177 2 60098765 to 60098782 17 - TSS region transcription start site region 24177
Tssr24178 2 60108002 to 60108006 4 - TSS region transcription start site region 24178
Tssr24179 2 60113779 to 60113807 28 - TSS region transcription start site region 24179
Tssr24180 2 60118761 to 60118768 7 - TSS region transcription start site region 24180
Cpgi11675 2 60124628 to 60125711 1083 CpG island CpG island 11675
Gm13620 2 60125096 to 60125819 723 + lincRNA gene predicted gene 13620
Tssr24181 2 60125586 to 60125598 12 - TSS region transcription start site region 24181
Tssr24182 2 60125607 to 60125618 11 - TSS region transcription start site region 24182
Tssr24183 2 60125651 to 60125775 124 - TSS region transcription start site region 24183
Tssr24184 2 60125812 to 60125823 11 - TSS region transcription start site region 24184
Ldha-ps 2 60134055 to 60135049 994 + pseudogene lactate dehydrogenase A, pseudogene
Tssr17878 2 60208393 to 60208421 28 + TSS region transcription start site region 17878
Cpgi11676 2 60209237 to 60210673 1436 CpG island CpG island 11676