MPD: Genes and genomic regions

Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g. 17:44-45 ..or.. X:22500000-23000000

Click here to work with the entire chromosomal region 2:59284120-59484128

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18 genes found.

Gene symbol	Chromo- some	Coordinates (bp, mm10)	Size (bp)	Strand	Feature Type	Gene name
Pkp4	2	59160850 to 59355205	194355	+	protein coding gene	plakophilin 4
Tssr17849	2	59297408 to 59297411	3	+	TSS region	transcription start site region 17849
D2Mit469	2	59299028 to 59299151	123		DNA segment	DNA Segment, Chr 2 Massachusetts Institute of Technology 469
Tssr17850	2	59314826 to 59314831	5	+	TSS region	transcription start site region 17850
Tssr17851	2	59338693 to 59338704	11	+	TSS region	transcription start site region 17851
Tssr17852	2	59338714 to 59338729	15	+	TSS region	transcription start site region 17852
Tssr17853	2	59338749 to 59338760	11	+	TSS region	transcription start site region 17853
Tssr17854	2	59351898 to 59351905	7	+	TSS region	transcription start site region 17854
Tssr17855	2	59380886 to 59380888	2	+	TSS region	transcription start site region 17855
5330411J11Rik	2	59382493 to 59386682	4189	-	lncRNA gene	RIKEN cDNA 5330411J11 gene
Cpgi11669	2	59383331 to 59383592	261		CpG island	CpG island 11669
Tssr17856	2	59384120 to 59384128	8	+	TSS region	transcription start site region 17856
Gm13551	2	59396488 to 59396917	429	+	pseudogene	predicted gene 13551
Gm13549	2	59398986 to 59399781	795	-	pseudogene	predicted gene 13549
Gm46743	2	59400738 to 59420501	19763	-	lncRNA gene	predicted gene, 46743
D2Mit123	2	59404418 to 59404558	140		DNA segment	DNA segment, Chr 2, Massachusetts Institute of Technology 123
Tssr24160	2	59470015 to 59470023	8	-	TSS region	transcription start site region 24160
Tssr17857	2	59471202 to 59471209	7	+	TSS region	transcription start site region 17857