Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:58935738-59885501

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73 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ccdc148 2 58821697 to 59160660 338963 - protein coding gene coiled-coil domain containing 148
Gm13557 2 58958675 to 58959707 1032 - pseudogene predicted gene 13557
Gm13550 2 59148099 to 59148623 524 - pseudogene predicted gene 13550
Tssr24157 2 59154712 to 59154718 6 - TSS region transcription start site region 24157
Tssr17838 2 59160347 to 59160354 7 + TSS region transcription start site region 17838
Cpgi11668 2 59160465 to 59162198 1733 CpG island CpG island 11668
Tssr24158 2 59160624 to 59160635 11 - TSS region transcription start site region 24158
Tssr24159 2 59160644 to 59160663 19 - TSS region transcription start site region 24159
Tssr17839 2 59160792 to 59160825 33 + TSS region transcription start site region 17839
Tssr17840 2 59160838 to 59160881 43 + TSS region transcription start site region 17840
Pkp4 2 59160850 to 59355205 194355 + protein coding gene plakophilin 4
Tssr17841 2 59160884 to 59160896 12 + TSS region transcription start site region 17841
Tssr17842 2 59161031 to 59161054 23 + TSS region transcription start site region 17842
Tssr17843 2 59161617 to 59161636 19 + TSS region transcription start site region 17843
Tssr17844 2 59161965 to 59161973 8 + TSS region transcription start site region 17844
Tssr17845 2 59162243 to 59162247 4 + TSS region transcription start site region 17845
C130057M05Rik 2 59180710 to 59183486 2776 unclassified gene RIKEN cDNA C130057M05 gene
Tssr17846 2 59222210 to 59222214 4 + TSS region transcription start site region 17846
Tssr17847 2 59237841 to 59237850 9 + TSS region transcription start site region 17847
Tssr17848 2 59238999 to 59239009 10 + TSS region transcription start site region 17848
Tssr17849 2 59297408 to 59297411 3 + TSS region transcription start site region 17849
D2Mit469 2 59299028 to 59299151 123 DNA segment DNA Segment, Chr 2 Massachusetts Institute of Technology 469
Tssr17850 2 59314826 to 59314831 5 + TSS region transcription start site region 17850
Tssr17851 2 59338693 to 59338704 11 + TSS region transcription start site region 17851
Tssr17852 2 59338714 to 59338729 15 + TSS region transcription start site region 17852
Tssr17853 2 59338749 to 59338760 11 + TSS region transcription start site region 17853
Tssr17854 2 59351898 to 59351905 7 + TSS region transcription start site region 17854
Tssr17855 2 59380886 to 59380888 2 + TSS region transcription start site region 17855
5330411J11Rik 2 59382493 to 59386682 4189 - lncRNA gene RIKEN cDNA 5330411J11 gene
Cpgi11669 2 59383331 to 59383592 261 CpG island CpG island 11669
Tssr17856 2 59384120 to 59384128 8 + TSS region transcription start site region 17856
Gm13551 2 59396488 to 59396917 429 + pseudogene predicted gene 13551
Gm13549 2 59398986 to 59399781 795 - pseudogene predicted gene 13549
Gm46743 2 59400738 to 59420501 19763 - lncRNA gene predicted gene, 46743
D2Mit123 2 59404418 to 59404558 140 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 123
Tssr24160 2 59470015 to 59470023 8 - TSS region transcription start site region 24160
Tssr17857 2 59471202 to 59471209 7 + TSS region transcription start site region 17857
Tssr17858 2 59484645 to 59484663 18 + TSS region transcription start site region 17858
Dapl1 2 59484653 to 59505020 20367 + protein coding gene death associated protein-like 1
Tssr17859 2 59504855 to 59504858 3 + TSS region transcription start site region 17859
Gm39831 2 59512133 to 59513260 1127 + lncRNA gene predicted gene, 39831
Gm13552 2 59564268 to 59564684 416 - pseudogene predicted gene 13552
Tssr17860 2 59598562 to 59598598 36 + TSS region transcription start site region 17860
Cpgi11670 2 59611619 to 59613373 1754 CpG island CpG island 11670
Tssr17861 2 59612034 to 59612109 75 + TSS region transcription start site region 17861
Tanc1 2 59612042 to 59846149 234107 + protein coding gene tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1
Tssr17862 2 59623000 to 59623004 4 + TSS region transcription start site region 17862
Tssr17863 2 59630066 to 59630075 9 + TSS region transcription start site region 17863
Tssr17864 2 59634299 to 59634303 4 + TSS region transcription start site region 17864
Gm32976 2 59638158 to 59639148 990 - pseudogene predicted gene, 32976
Tssr17865 2 59640367 to 59640371 4 + TSS region transcription start site region 17865
Tssr17866 2 59645494 to 59645497 3 + TSS region transcription start site region 17866
5830418L09Rik 2 59650024 to 59653246 3222 unclassified gene RIKEN cDNA 5830418L09 gene
Tssr17867 2 59656512 to 59656516 4 + TSS region transcription start site region 17867
6720460K10Rik 2 59683730 to 59684788 1058 unclassified gene RIKEN cDNA 6720460K10 gene
Tssr17868 2 59776029 to 59776054 25 + TSS region transcription start site region 17868
Tssr17869 2 59776067 to 59776086 19 + TSS region transcription start site region 17869
Tssr17870 2 59779488 to 59779506 18 + TSS region transcription start site region 17870
Tssr17871 2 59779699 to 59779721 22 + TSS region transcription start site region 17871
Tssr17872 2 59779727 to 59779743 16 + TSS region transcription start site region 17872
D2Mit181 2 59788588 to 59788729 141 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 181
Cpgi11671 2 59799619 to 59799868 249 CpG island CpG island 11671
Tssr17873 2 59806154 to 59806158 4 + TSS region transcription start site region 17873
Tssr17874 2 59811724 to 59811733 9 + TSS region transcription start site region 17874
Tssr17875 2 59811944 to 59811973 29 + TSS region transcription start site region 17875
Tssr17876 2 59812014 to 59812041 27 + TSS region transcription start site region 17876
Cpgi11672 2 59843256 to 59843576 320 CpG island CpG island 11672
Wdsub1 2 59852364 to 59882591 30227 - protein coding gene WD repeat, SAM and U-box domain containing 1
Cpgi11673 2 59878149 to 59878525 376 CpG island CpG island 11673
Cpgi11674 2 59882177 to 59882735 558 CpG island CpG island 11674
Tssr24161 2 59882497 to 59882513 16 - TSS region transcription start site region 24161
Tssr24162 2 59882541 to 59882555 14 - TSS region transcription start site region 24162
Tssr24163 2 59882556 to 59882612 56 - TSS region transcription start site region 24163