Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:5876480-6026536

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23 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sec61a2 2 5870987 to 5895432 24445 - protein coding gene Sec61, alpha subunit 2 (S. cerevisiae)
B930028L11Rik 2 5887225 to 5889499 2274 unclassified gene RIKEN cDNA B930028L11 gene
Cpgi11170 2 5894950 to 5895579 629 CpG island CpG island 11170
Tssr22430 2 5895325 to 5895408 83 - TSS region transcription start site region 22430
Tssr16010 2 5895456 to 5895475 19 + TSS region transcription start site region 16010
Tssr16011 2 5895489 to 5895513 24 + TSS region transcription start site region 16011
Gm13267 2 5895510 to 5900131 4621 + antisense lncRNA gene predicted gene 13267
Dhtkd1 2 5896115 to 5942792 46677 - protein coding gene dehydrogenase E1 and transketolase domain containing 1
Gm10859 2 5911952 to 5914498 2546 unclassified gene predicted gene 10859
Tssr22431 2 5925268 to 5925272 4 - TSS region transcription start site region 22431
Tssr22432 2 5934533 to 5934535 2 - TSS region transcription start site region 22432
Cpgi11171 2 5942388 to 5942796 408 CpG island CpG island 11171
Tssr22433 2 5942719 to 5942729 10 - TSS region transcription start site region 22433
Tssr22434 2 5942740 to 5942804 64 - TSS region transcription start site region 22434
Cpgi11172 2 5950854 to 5951025 171 CpG island CpG island 11172
Cpgi11173 2 5951054 to 5952232 1178 CpG island CpG island 11173
Tssr16012 2 5951440 to 5951468 28 + TSS region transcription start site region 16012
Upf2 2 5951469 to 6056703 105234 + protein coding gene UPF2 regulator of nonsense transcripts homolog (yeast)
Tssr16013 2 5951480 to 5951536 56 + TSS region transcription start site region 16013
Tssr16014 2 5951568 to 5951589 21 + TSS region transcription start site region 16014
Tssr16015 2 5954581 to 5954621 40 + TSS region transcription start site region 16015
Tssr16016 2 5957460 to 5957473 13 + TSS region transcription start site region 16016
Tssr16017 2 5957597 to 5957620 23 + TSS region transcription start site region 16017