Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:5825987-5940432

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21 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cdc123 2 5794294 to 5844968 50674 - protein coding gene cell division cycle 123
Gm29984 2 5825418 to 5830815 5397 + lncRNA gene predicted gene, 29984
Cpgi11169 2 5844620 to 5845694 1074 CpG island CpG island 11169
Tssr22429 2 5844917 to 5844985 68 - TSS region transcription start site region 22429
Tssr16006 2 5845017 to 5845062 45 + TSS region transcription start site region 16006
Nudt5 2 5845034 to 5870820 25786 + protein coding gene nudix (nucleoside diphosphate linked moiety X)-type motif 5
Tssr16007 2 5845243 to 5845311 68 + TSS region transcription start site region 16007
Tssr16008 2 5848120 to 5848134 14 + TSS region transcription start site region 16008
Tssr16009 2 5852845 to 5852857 12 + TSS region transcription start site region 16009
Gm13199 2 5862080 to 5862934 854 - protein coding gene predicted gene 13199
Sec61a2 2 5870987 to 5895432 24445 - protein coding gene Sec61, alpha subunit 2 (S. cerevisiae)
B930028L11Rik 2 5887225 to 5889499 2274 unclassified gene RIKEN cDNA B930028L11 gene
Cpgi11170 2 5894950 to 5895579 629 CpG island CpG island 11170
Tssr22430 2 5895325 to 5895408 83 - TSS region transcription start site region 22430
Tssr16010 2 5895456 to 5895475 19 + TSS region transcription start site region 16010
Tssr16011 2 5895489 to 5895513 24 + TSS region transcription start site region 16011
Gm13267 2 5895510 to 5900131 4621 + antisense lncRNA gene predicted gene 13267
Dhtkd1 2 5896115 to 5942792 46677 - protein coding gene dehydrogenase E1 and transketolase domain containing 1
Gm10859 2 5911952 to 5914498 2546 unclassified gene predicted gene 10859
Tssr22431 2 5925268 to 5925272 4 - TSS region transcription start site region 22431
Tssr22432 2 5934533 to 5934535 2 - TSS region transcription start site region 22432