Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:58161965-60161973

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148 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cytip 2 58129137 to 58195532 66395 - protein coding gene cytohesin 1 interacting protein
Tssr24148 2 58163740 to 58163776 36 - TSS region transcription start site region 24148
Tssr17823 2 58163951 to 58163996 45 + TSS region transcription start site region 17823
Gm13546 2 58164001 to 58177063 13062 + antisense lncRNA gene predicted gene 13546
Tssr17824 2 58194743 to 58194750 7 + TSS region transcription start site region 17824
Tssr24149 2 58195474 to 58195491 17 - TSS region transcription start site region 24149
Tssr24150 2 58195501 to 58195552 51 - TSS region transcription start site region 24150
Tssr499 2 58238999 to 58239000 1 + TSS region transcription start site region 499
Acvr1c 2 58267453 to 58357895 90442 - protein coding gene activin A receptor, type IC
Tssr24151 2 58268033 to 58268037 4 - TSS region transcription start site region 24151
Gm13544 2 58276779 to 58286902 10123 + antisense lncRNA gene predicted gene 13544
Cpgi11664 2 58324387 to 58324735 348 CpG island CpG island 11664
Gm13545 2 58338347 to 58338828 481 + pseudogene predicted gene 13545
Cpgi11665 2 58357172 to 58358293 1121 CpG island CpG island 11665
Tssr24152 2 58357778 to 58357817 39 - TSS region transcription start site region 24152
Acvr1 2 58446438 to 58566828 120390 - protein coding gene activin A receptor, type 1
Gm17409 2 58470116 to 58471077 961 + protein coding gene predicted gene, 17409
Cpgi11666 2 58566118 to 58567918 1800 CpG island CpG island 11666
Tssr24153 2 58567021 to 58567032 11 - TSS region transcription start site region 24153
Tssr24154 2 58567157 to 58567288 131 - TSS region transcription start site region 24154
Tssr17825 2 58567290 to 58567322 32 + TSS region transcription start site region 17825
Upp2 2 58567298 to 58792971 225673 + protein coding gene uridine phosphorylase 2
Tssr17826 2 58567360 to 58567408 48 + TSS region transcription start site region 17826
Tssr24155 2 58567598 to 58567611 13 - TSS region transcription start site region 24155
Gm13558 2 58705769 to 58735396 29627 + sense intronic lncRNA gene predicted gene 13558
Gm13559 2 58740639 to 58741501 862 + pseudogene predicted gene 13559
Tssr24156 2 58743523 to 58743526 3 - TSS region transcription start site region 24156
Tssr17827 2 58754910 to 58754921 11 + TSS region transcription start site region 17827
Tssr17828 2 58755177 to 58755195 18 + TSS region transcription start site region 17828
Tssr17829 2 58755677 to 58755687 10 + TSS region transcription start site region 17829
Tssr17830 2 58762257 to 58762274 17 + TSS region transcription start site region 17830
Tssr17831 2 58767271 to 58767291 20 + TSS region transcription start site region 17831
Tssr17832 2 58769636 to 58769637 1 + TSS region transcription start site region 17832
Tssr17833 2 58769763 to 58769772 9 + TSS region transcription start site region 17833
Tssr17834 2 58769978 to 58769994 16 + TSS region transcription start site region 17834
Tssr17835 2 58769999 to 58770026 27 + TSS region transcription start site region 17835
Tssr500 2 58770047 to 58770050 3 + TSS region transcription start site region 500
Tssr17836 2 58780017 to 58780028 11 + TSS region transcription start site region 17836
Tssr501 2 58780457 to 58780464 7 + TSS region transcription start site region 501
Tssr17837 2 58790175 to 58790191 16 + TSS region transcription start site region 17837
Ccdc148 2 58821697 to 59160660 338963 - protein coding gene coiled-coil domain containing 148
Tssr502 2 58830663 to 58830670 7 + TSS region transcription start site region 502
Cpgi11667 2 58832087 to 58832426 339 CpG island CpG island 11667
Gm11099 2 58859434 to 58907618 48184 + protein coding gene predicted gene 11099
Gm13560 2 58894040 to 58894368 328 + pseudogene predicted gene 13560
Pbwg1 2 58930707 to 58930831 124 QTL postnatal body weight growth 1
D2Mit324 2 58930707 to 58930831 124 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 324
Gm13557 2 58958675 to 58959707 1032 - pseudogene predicted gene 13557
Gm13550 2 59148099 to 59148623 524 - pseudogene predicted gene 13550
Tssr24157 2 59154712 to 59154718 6 - TSS region transcription start site region 24157
Tssr17838 2 59160347 to 59160354 7 + TSS region transcription start site region 17838
Cpgi11668 2 59160465 to 59162198 1733 CpG island CpG island 11668
Tssr24158 2 59160624 to 59160635 11 - TSS region transcription start site region 24158
Tssr24159 2 59160644 to 59160663 19 - TSS region transcription start site region 24159
Tssr17839 2 59160792 to 59160825 33 + TSS region transcription start site region 17839
Tssr17840 2 59160838 to 59160881 43 + TSS region transcription start site region 17840
Pkp4 2 59160850 to 59355205 194355 + protein coding gene plakophilin 4
Tssr17841 2 59160884 to 59160896 12 + TSS region transcription start site region 17841
Tssr17842 2 59161031 to 59161054 23 + TSS region transcription start site region 17842
Tssr17843 2 59161617 to 59161636 19 + TSS region transcription start site region 17843
Tssr17844 2 59161965 to 59161973 8 + TSS region transcription start site region 17844
Tssr17845 2 59162243 to 59162247 4 + TSS region transcription start site region 17845
C130057M05Rik 2 59180710 to 59183486 2776 unclassified gene RIKEN cDNA C130057M05 gene
Tssr17846 2 59222210 to 59222214 4 + TSS region transcription start site region 17846
Tssr17847 2 59237841 to 59237850 9 + TSS region transcription start site region 17847
Tssr17848 2 59238999 to 59239009 10 + TSS region transcription start site region 17848
Tssr17849 2 59297408 to 59297411 3 + TSS region transcription start site region 17849
D2Mit469 2 59299028 to 59299151 123 DNA segment DNA Segment, Chr 2 Massachusetts Institute of Technology 469
Tssr17850 2 59314826 to 59314831 5 + TSS region transcription start site region 17850
Tssr17851 2 59338693 to 59338704 11 + TSS region transcription start site region 17851
Tssr17852 2 59338714 to 59338729 15 + TSS region transcription start site region 17852
Tssr17853 2 59338749 to 59338760 11 + TSS region transcription start site region 17853
Tssr17854 2 59351898 to 59351905 7 + TSS region transcription start site region 17854
Tssr17855 2 59380886 to 59380888 2 + TSS region transcription start site region 17855
5330411J11Rik 2 59382493 to 59386682 4189 - lncRNA gene RIKEN cDNA 5330411J11 gene
Cpgi11669 2 59383331 to 59383592 261 CpG island CpG island 11669
Tssr17856 2 59384120 to 59384128 8 + TSS region transcription start site region 17856
Gm13551 2 59396488 to 59396917 429 + pseudogene predicted gene 13551
Gm13549 2 59398986 to 59399781 795 - pseudogene predicted gene 13549
Gm46743 2 59400738 to 59420501 19763 - lncRNA gene predicted gene, 46743
D2Mit123 2 59404418 to 59404558 140 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 123
Tssr24160 2 59470015 to 59470023 8 - TSS region transcription start site region 24160
Tssr17857 2 59471202 to 59471209 7 + TSS region transcription start site region 17857
Tssr17858 2 59484645 to 59484663 18 + TSS region transcription start site region 17858
Dapl1 2 59484653 to 59505020 20367 + protein coding gene death associated protein-like 1
Tssr17859 2 59504855 to 59504858 3 + TSS region transcription start site region 17859
Gm39831 2 59512133 to 59513260 1127 + lncRNA gene predicted gene, 39831
Gm13552 2 59564268 to 59564684 416 - pseudogene predicted gene 13552
Tssr17860 2 59598562 to 59598598 36 + TSS region transcription start site region 17860
Cpgi11670 2 59611619 to 59613373 1754 CpG island CpG island 11670
Tssr17861 2 59612034 to 59612109 75 + TSS region transcription start site region 17861
Tanc1 2 59612042 to 59846149 234107 + protein coding gene tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1
Tssr17862 2 59623000 to 59623004 4 + TSS region transcription start site region 17862
Tssr17863 2 59630066 to 59630075 9 + TSS region transcription start site region 17863
Tssr17864 2 59634299 to 59634303 4 + TSS region transcription start site region 17864
Gm32976 2 59638158 to 59639148 990 - pseudogene predicted gene, 32976
Tssr17865 2 59640367 to 59640371 4 + TSS region transcription start site region 17865
Tssr17866 2 59645494 to 59645497 3 + TSS region transcription start site region 17866
5830418L09Rik 2 59650024 to 59653246 3222 unclassified gene RIKEN cDNA 5830418L09 gene
Tssr17867 2 59656512 to 59656516 4 + TSS region transcription start site region 17867
6720460K10Rik 2 59683730 to 59684788 1058 unclassified gene RIKEN cDNA 6720460K10 gene
Tssr17868 2 59776029 to 59776054 25 + TSS region transcription start site region 17868
Tssr17869 2 59776067 to 59776086 19 + TSS region transcription start site region 17869
Tssr17870 2 59779488 to 59779506 18 + TSS region transcription start site region 17870
Tssr17871 2 59779699 to 59779721 22 + TSS region transcription start site region 17871
Tssr17872 2 59779727 to 59779743 16 + TSS region transcription start site region 17872
D2Mit181 2 59788588 to 59788729 141 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 181
Cpgi11671 2 59799619 to 59799868 249 CpG island CpG island 11671
Tssr17873 2 59806154 to 59806158 4 + TSS region transcription start site region 17873
Tssr17874 2 59811724 to 59811733 9 + TSS region transcription start site region 17874
Tssr17875 2 59811944 to 59811973 29 + TSS region transcription start site region 17875
Tssr17876 2 59812014 to 59812041 27 + TSS region transcription start site region 17876
Cpgi11672 2 59843256 to 59843576 320 CpG island CpG island 11672
Wdsub1 2 59852364 to 59882591 30227 - protein coding gene WD repeat, SAM and U-box domain containing 1
Cpgi11673 2 59878149 to 59878525 376 CpG island CpG island 11673
Cpgi11674 2 59882177 to 59882735 558 CpG island CpG island 11674
Tssr24161 2 59882497 to 59882513 16 - TSS region transcription start site region 24161
Tssr24162 2 59882541 to 59882555 14 - TSS region transcription start site region 24162
Tssr24163 2 59882556 to 59882612 56 - TSS region transcription start site region 24163
Baz2b 2 59899363 to 60209839 310476 - protein coding gene bromodomain adjacent to zinc finger domain, 2B
Tssr24164 2 59920407 to 59920421 14 - TSS region transcription start site region 24164
Tssr24165 2 59943027 to 59943039 12 - TSS region transcription start site region 24165
Tssr24166 2 59948155 to 59948192 37 - TSS region transcription start site region 24166
Tssr24167 2 59948221 to 59948250 29 - TSS region transcription start site region 24167
Tssr24168 2 59952855 to 59952866 11 - TSS region transcription start site region 24168
Tssr24169 2 59953740 to 59953751 11 - TSS region transcription start site region 24169
Tssr24170 2 59953760 to 59953767 7 - TSS region transcription start site region 24170
Tssr24171 2 59979677 to 59979681 4 - TSS region transcription start site region 24171
Gm13574 2 59991951 to 59992344 393 - pseudogene predicted gene 13574
Tssr24172 2 60004735 to 60004739 4 - TSS region transcription start site region 24172
Tssr24173 2 60010564 to 60010566 2 - TSS region transcription start site region 24173
Gm13572 2 60037141 to 60038837 1696 + lincRNA gene predicted gene 13572
Tssr24174 2 60037348 to 60037398 50 - TSS region transcription start site region 24174
Tssr24175 2 60049294 to 60049297 3 - TSS region transcription start site region 24175
Tssr17877 2 60072011 to 60072047 36 + TSS region transcription start site region 17877
Gm13570 2 60098406 to 60098714 308 - pseudogene predicted gene 13570
Tssr24176 2 60098728 to 60098740 12 - TSS region transcription start site region 24176
Tssr24177 2 60098765 to 60098782 17 - TSS region transcription start site region 24177
Tssr24178 2 60108002 to 60108006 4 - TSS region transcription start site region 24178
Tssr24179 2 60113779 to 60113807 28 - TSS region transcription start site region 24179
Tssr24180 2 60118761 to 60118768 7 - TSS region transcription start site region 24180
Cpgi11675 2 60124628 to 60125711 1083 CpG island CpG island 11675
Gm13620 2 60125096 to 60125819 723 + lincRNA gene predicted gene 13620
Tssr24181 2 60125586 to 60125598 12 - TSS region transcription start site region 24181
Tssr24182 2 60125607 to 60125618 11 - TSS region transcription start site region 24182
Tssr24183 2 60125651 to 60125775 124 - TSS region transcription start site region 24183
Tssr24184 2 60125812 to 60125823 11 - TSS region transcription start site region 24184
Ldha-ps 2 60134055 to 60135049 994 + pseudogene lactate dehydrogenase A, pseudogene