Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:56251831-58118257

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86 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pgis2 2 25418039 to 57081799 31663760 QTL proteoglycan induced spondylitis 2
Cfq2 2 27132630 to 56506216 29373586 QTL conditioned fear QTL 2
2900083M14Rik 2 56265843 to 56266044 201 unclassified gene RIKEN cDNA 2900083M14 gene
D2Mit89 2 56627994 to 56628187 193 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 89
5730437C12Rik 2 56774843 to 56776295 1452 unclassified gene RIKEN cDNA 5730437C12 gene
Gm33458 2 56776738 to 56801304 24566 - lncRNA gene predicted gene, 33458
Mir195b 2 56785811 to 56785907 96 + miRNA gene microRNA 195b
Gm13527 2 57079748 to 57080438 690 + pseudogene predicted gene 13527
D2Mit156 2 57081653 to 57081799 146 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 156
Ltpr1 2 57081653 to 57081799 146 QTL Leishmania tropica response 1
Cpgi11656 2 57102204 to 57103119 915 CpG island CpG island 11656
Tssr24108 2 57106598 to 57106621 23 - TSS region transcription start site region 24108
Nr4a2 2 57106830 to 57124003 17173 - protein coding gene nuclear receptor subfamily 4, group A, member 2
Tssr24109 2 57107934 to 57107944 10 - TSS region transcription start site region 24109
Tssr24110 2 57108076 to 57108085 9 - TSS region transcription start site region 24110
Tssr24111 2 57108276 to 57108285 9 - TSS region transcription start site region 24111
Tssr24112 2 57108313 to 57108321 8 - TSS region transcription start site region 24112
Cpgi11657 2 57111476 to 57112134 658 CpG island CpG island 11657
Tssr24113 2 57113053 to 57113063 10 - TSS region transcription start site region 24113
Cpgi11658 2 57114153 to 57115705 1552 CpG island CpG island 11658
Tssr24114 2 57114748 to 57114780 32 - TSS region transcription start site region 24114
Tssr24115 2 57114905 to 57114916 11 - TSS region transcription start site region 24115
Tssr24116 2 57114923 to 57114955 32 - TSS region transcription start site region 24116
Tssr24117 2 57114970 to 57114975 5 - TSS region transcription start site region 24117
Tssr17791 2 57115126 to 57115162 36 + TSS region transcription start site region 17791
Cpgi11659 2 57115776 to 57117022 1246 CpG island CpG island 11659
Tssr24118 2 57116603 to 57116614 11 - TSS region transcription start site region 24118
Tssr17792 2 57116896 to 57116905 9 + TSS region transcription start site region 17792
D030020J04Rik 2 57118007 to 57122917 4910 unclassified gene RIKEN cDNA D030020J04 gene
Tssr24119 2 57122101 to 57122102 1 - TSS region transcription start site region 24119
2210008N01Rik 2 57123334 to 57124694 1360 - protein coding gene RIKEN cDNA 2210008N01 gene
Cpgi11660 2 57123411 to 57124660 1249 CpG island CpG island 11660
Tssr24120 2 57124056 to 57124071 15 - TSS region transcription start site region 24120
Tssr24121 2 57124132 to 57124147 15 - TSS region transcription start site region 24121
BB557941 2 57127479 to 57181754 54275 - lncRNA gene expressed sequence BB557941
Cpgi11661 2 57181657 to 57182145 488 CpG island CpG island 11661
Tssr24122 2 57181748 to 57181762 14 - TSS region transcription start site region 24122
4930555B11Rik 2 57181831 to 57188257 6426 + lncRNA gene RIKEN cDNA 4930555B11 gene
n-TAcgc8 2 57182078 to 57182149 71 + tRNA gene nuclear encoded tRNA alanine 8 (anticodon CGC)
n-TGgcc8 2 57182394 to 57182464 70 - tRNA gene nuclear encoded tRNA glycine 8 (anticodon GCC)
Atp5k-ps4 2 57214046 to 57214247 201 - pseudogene ATP synthase, H+ transporting, mitochondrial F1F0 complex, subunit E, pseudogene 4
Gm13526 2 57214054 to 57214242 188 - pseudogene predicted gene 13526
Gm39813 2 57223317 to 57224824 1507 + lncRNA gene predicted gene, 39813
A930012O16Rik 2 57236227 to 57238508 2281 - unclassified non-coding RNA gene RIKEN cDNA A930012O16 gene
Cpgi11662 2 57237633 to 57239087 1454 CpG island CpG island 11662
Tssr17793 2 57237651 to 57237729 78 + TSS region transcription start site region 17793
Gpd2 2 57237678 to 57370719 133041 + protein coding gene glycerol phosphate dehydrogenase 2, mitochondrial
Tssr24123 2 57238310 to 57238346 36 - TSS region transcription start site region 24123
Tssr17794 2 57238414 to 57238425 11 + TSS region transcription start site region 17794
Tssr17795 2 57238427 to 57238459 32 + TSS region transcription start site region 17795
Tssr17796 2 57238463 to 57238482 19 + TSS region transcription start site region 17796
Tssr24124 2 57238758 to 57238764 6 - TSS region transcription start site region 24124
Tssr17797 2 57265101 to 57265130 29 + TSS region transcription start site region 17797
Tssr17798 2 57265137 to 57265158 21 + TSS region transcription start site region 17798
Tssr17799 2 57267359 to 57267363 4 + TSS region transcription start site region 17799
Tssr17800 2 57268518 to 57268536 18 + TSS region transcription start site region 17800
Gm13535 2 57272526 to 57275525 2999 - pseudogene predicted gene 13535
Tssr24125 2 57292443 to 57292461 18 - TSS region transcription start site region 24125
Tssr17801 2 57295813 to 57295817 4 + TSS region transcription start site region 17801
D2Mit433 2 57297111 to 57297283 172 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology 433
Pbwg1.3 2 57297111 to 65302151 8005040 QTL postnatal body weight growth 1.3
Tssr24126 2 57297437 to 57297448 11 - TSS region transcription start site region 24126
Tssr24127 2 57297560 to 57297627 67 - TSS region transcription start site region 24127
Tssr24128 2 57297633 to 57297646 13 - TSS region transcription start site region 24128
Tssr17802 2 57317406 to 57317445 39 + TSS region transcription start site region 17802
Tssr17803 2 57330161 to 57330201 40 + TSS region transcription start site region 17803
D2Mit242 2 57349961 to 57350096 135 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 242
Tssr17804 2 57359758 to 57359763 5 + TSS region transcription start site region 17804
Tssr17805 2 57367463 to 57367474 11 + TSS region transcription start site region 17805
Tssr17806 2 57367494 to 57367528 34 + TSS region transcription start site region 17806
Tssr24129 2 57367638 to 57367672 34 - TSS region transcription start site region 24129
Tssr17807 2 57368417 to 57368432 15 + TSS region transcription start site region 17807
Tssr17808 2 57368448 to 57368465 17 + TSS region transcription start site region 17808
Tssr17809 2 57369306 to 57369318 12 + TSS region transcription start site region 17809
Tssr17810 2 57372656 to 57372665 9 + TSS region transcription start site region 17810
Gm13531 2 57425167 to 57425709 542 - pseudogene predicted gene 13531
Gm18845 2 57562775 to 57563931 1156 + pseudogene predicted gene, 18845
Gm13532 2 57628989 to 57629228 239 - pseudogene predicted gene 13532
Gm13533 2 57643648 to 57643824 176 - pseudogene predicted gene 13533
Gm25388 2 57653672 to 57653822 150 - snoRNA gene predicted gene, 25388
Gm33594 2 57982192 to 57986017 3825 - lincRNA gene predicted gene, 33594
Galnt5 2 57997263 to 58041027 43764 + protein coding gene polypeptide N-acetylgalactosaminyltransferase 5
Ermn 2 58045115 to 58052752 7637 - protein coding gene ermin, ERM-like protein
Tssr24130 2 58052810 to 58052829 19 - TSS region transcription start site region 24130
Tssr24131 2 58052832 to 58052870 38 - TSS region transcription start site region 24131
Gm13534 2 58108060 to 58108572 512 + pseudogene predicted gene 13534