Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:54296988-57156995

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85 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pgis2 2 25418039 to 57081799 31663760 QTL proteoglycan induced spondylitis 2
Cfq2 2 27132630 to 56506216 29373586 QTL conditioned fear QTL 2
Gm14034 2 54356341 to 54356891 550 - pseudogene predicted gene 14034
Gm46742 2 54422573 to 54436077 13504 - lncRNA gene predicted gene, 46742
Cpgi11653 2 54435936 to 54437250 1314 CpG island CpG island 11653
Galnt13 2 54436317 to 55118309 681992 + protein coding gene polypeptide N-acetylgalactosaminyltransferase 13
Tssr17764 2 54436374 to 54436422 48 + TSS region transcription start site region 17764
Tssr17765 2 54436432 to 54436441 9 + TSS region transcription start site region 17765
Gm24549 2 54565998 to 54566136 138 - snoRNA gene predicted gene, 24549
D2Jpk3 2 54580729 to 54580849 120 DNA segment DNA segment, Chr 2, Japan, Kominami 3
Tssr497 2 54610642 to 54610643 1 + TSS region transcription start site region 497
Tssr17766 2 54854225 to 54854229 4 + TSS region transcription start site region 17766
Tssr17767 2 54854674 to 54854712 38 + TSS region transcription start site region 17767
Tssr17768 2 54905524 to 54905528 4 + TSS region transcription start site region 17768
Gm25489 2 55003985 to 55004125 140 + snRNA gene predicted gene, 25489
D2Mit8 2 55058413 to 55058600 187 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 8
Tssr17769 2 55105567 to 55105570 3 + TSS region transcription start site region 17769
Tssr17770 2 55114231 to 55114244 13 + TSS region transcription start site region 17770
Tssr17771 2 55115764 to 55115776 12 + TSS region transcription start site region 17771
Gm14032 2 55292065 to 55293087 1022 + pseudogene predicted gene 14032
Tssr17772 2 55292149 to 55292177 28 + TSS region transcription start site region 17772
Tssr17773 2 55292346 to 55292379 33 + TSS region transcription start site region 17773
Tssr17774 2 55292470 to 55292501 31 + TSS region transcription start site region 17774
Tssr17775 2 55292968 to 55292987 19 + TSS region transcription start site region 17775
D2Mit323 2 55310916 to 55311040 124 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 323
Gm14033 2 55411790 to 55433435 21645 + lincRNA gene predicted gene 14033
Tssr17776 2 55411813 to 55411819 6 + TSS region transcription start site region 17776
Gm26794 2 55433514 to 55437860 4346 - lincRNA gene predicted gene, 26794
Tssr17777 2 55435788 to 55435801 13 + TSS region transcription start site region 17777
Tssr17778 2 55435803 to 55435816 13 + TSS region transcription start site region 17778
Tssr17779 2 55435890 to 55435916 26 + TSS region transcription start site region 17779
Cpgi11654 2 55435890 to 55436572 682 CpG island CpG island 11654
Tssr17780 2 55435918 to 55435949 31 + TSS region transcription start site region 17780
Kcnj3 2 55435970 to 55598145 162175 + protein coding gene potassium inwardly-rectifying channel, subfamily J, member 3
Tssr17781 2 55436388 to 55436399 11 + TSS region transcription start site region 17781
Tssr17782 2 55437100 to 55437182 82 + TSS region transcription start site region 17782
Cpgi11655 2 55437110 to 55437935 825 CpG island CpG island 11655
Tssr17783 2 55437190 to 55437201 11 + TSS region transcription start site region 17783
Tssr17784 2 55437524 to 55437535 11 + TSS region transcription start site region 17784
Tssr17785 2 55451699 to 55451703 4 + TSS region transcription start site region 17785
Tssr17786 2 55511542 to 55511546 4 + TSS region transcription start site region 17786
Tssr17787 2 55597292 to 55597307 15 + TSS region transcription start site region 17787
Tssr17788 2 55597317 to 55597343 26 + TSS region transcription start site region 17788
Tssr17789 2 55597348 to 55597362 14 + TSS region transcription start site region 17789
Tssr17790 2 55597520 to 55597543 23 + TSS region transcription start site region 17790
Tssr498 2 55726988 to 55726995 7 + TSS region transcription start site region 498
Gm13517 2 55775647 to 55776745 1098 + pseudogene predicted gene 13517
D2Mit157 2 55801538 to 55801673 135 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 157
D2Mit471 2 55801556 to 55801673 117 DNA segment DNA Segment, Chr 2 Massachusetts Institute of Technology 471
Dwh 2 55801673 to 7718847 -48082826 heritable phenotypic marker dispersed white hair
Gm13615 2 55970695 to 55972103 1408 - pseudogene predicted gene 13615
Gm13518 2 56039853 to 56040085 232 + pseudogene predicted gene 13518
2900083M14Rik 2 56265843 to 56266044 201 unclassified gene RIKEN cDNA 2900083M14 gene
D2Mit89 2 56627994 to 56628187 193 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 89
5730437C12Rik 2 56774843 to 56776295 1452 unclassified gene RIKEN cDNA 5730437C12 gene
Gm33458 2 56776738 to 56801304 24566 - lncRNA gene predicted gene, 33458
Mir195b 2 56785811 to 56785907 96 + miRNA gene microRNA 195b
Gm13527 2 57079748 to 57080438 690 + pseudogene predicted gene 13527
D2Mit156 2 57081653 to 57081799 146 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 156
Ltpr1 2 57081653 to 57081799 146 QTL Leishmania tropica response 1
Cpgi11656 2 57102204 to 57103119 915 CpG island CpG island 11656
Tssr24108 2 57106598 to 57106621 23 - TSS region transcription start site region 24108
Nr4a2 2 57106830 to 57124003 17173 - protein coding gene nuclear receptor subfamily 4, group A, member 2
Tssr24109 2 57107934 to 57107944 10 - TSS region transcription start site region 24109
Tssr24110 2 57108076 to 57108085 9 - TSS region transcription start site region 24110
Tssr24111 2 57108276 to 57108285 9 - TSS region transcription start site region 24111
Tssr24112 2 57108313 to 57108321 8 - TSS region transcription start site region 24112
Cpgi11657 2 57111476 to 57112134 658 CpG island CpG island 11657
Tssr24113 2 57113053 to 57113063 10 - TSS region transcription start site region 24113
Cpgi11658 2 57114153 to 57115705 1552 CpG island CpG island 11658
Tssr24114 2 57114748 to 57114780 32 - TSS region transcription start site region 24114
Tssr24115 2 57114905 to 57114916 11 - TSS region transcription start site region 24115
Tssr24116 2 57114923 to 57114955 32 - TSS region transcription start site region 24116
Tssr24117 2 57114970 to 57114975 5 - TSS region transcription start site region 24117
Tssr17791 2 57115126 to 57115162 36 + TSS region transcription start site region 17791
Cpgi11659 2 57115776 to 57117022 1246 CpG island CpG island 11659
Tssr24118 2 57116603 to 57116614 11 - TSS region transcription start site region 24118
Tssr17792 2 57116896 to 57116905 9 + TSS region transcription start site region 17792
D030020J04Rik 2 57118007 to 57122917 4910 unclassified gene RIKEN cDNA D030020J04 gene
Tssr24119 2 57122101 to 57122102 1 - TSS region transcription start site region 24119
2210008N01Rik 2 57123334 to 57124694 1360 - protein coding gene RIKEN cDNA 2210008N01 gene
Cpgi11660 2 57123411 to 57124660 1249 CpG island CpG island 11660
Tssr24120 2 57124056 to 57124071 15 - TSS region transcription start site region 24120
Tssr24121 2 57124132 to 57124147 15 - TSS region transcription start site region 24121
BB557941 2 57127479 to 57181754 54275 - lncRNA gene expressed sequence BB557941