Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:54282204-59923119

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287 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pgis2 2 25418039 to 57081799 31663760 QTL proteoglycan induced spondylitis 2
Cfq2 2 27132630 to 56506216 29373586 QTL conditioned fear QTL 2
Gm14035 2 54284037 to 54285475 1438 + pseudogene predicted gene 14035
Gm14034 2 54356341 to 54356891 550 - pseudogene predicted gene 14034
Gm46742 2 54422573 to 54436077 13504 - lncRNA gene predicted gene, 46742
Cpgi11653 2 54435936 to 54437250 1314 CpG island CpG island 11653
Galnt13 2 54436317 to 55118309 681992 + protein coding gene polypeptide N-acetylgalactosaminyltransferase 13
Tssr17764 2 54436374 to 54436422 48 + TSS region transcription start site region 17764
Tssr17765 2 54436432 to 54436441 9 + TSS region transcription start site region 17765
Gm24549 2 54565998 to 54566136 138 - snoRNA gene predicted gene, 24549
D2Jpk3 2 54580729 to 54580849 120 DNA segment DNA segment, Chr 2, Japan, Kominami 3
Tssr497 2 54610642 to 54610643 1 + TSS region transcription start site region 497
Tssr17766 2 54854225 to 54854229 4 + TSS region transcription start site region 17766
Tssr17767 2 54854674 to 54854712 38 + TSS region transcription start site region 17767
Tssr17768 2 54905524 to 54905528 4 + TSS region transcription start site region 17768
Gm25489 2 55003985 to 55004125 140 + snRNA gene predicted gene, 25489
D2Mit8 2 55058413 to 55058600 187 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 8
Tssr17769 2 55105567 to 55105570 3 + TSS region transcription start site region 17769
Tssr17770 2 55114231 to 55114244 13 + TSS region transcription start site region 17770
Tssr17771 2 55115764 to 55115776 12 + TSS region transcription start site region 17771
Gm14032 2 55292065 to 55293087 1022 + pseudogene predicted gene 14032
Tssr17772 2 55292149 to 55292177 28 + TSS region transcription start site region 17772
Tssr17773 2 55292346 to 55292379 33 + TSS region transcription start site region 17773
Tssr17774 2 55292470 to 55292501 31 + TSS region transcription start site region 17774
Tssr17775 2 55292968 to 55292987 19 + TSS region transcription start site region 17775
D2Mit323 2 55310916 to 55311040 124 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 323
Gm14033 2 55411790 to 55433435 21645 + lincRNA gene predicted gene 14033
Tssr17776 2 55411813 to 55411819 6 + TSS region transcription start site region 17776
Gm26794 2 55433514 to 55437860 4346 - lincRNA gene predicted gene, 26794
Tssr17777 2 55435788 to 55435801 13 + TSS region transcription start site region 17777
Tssr17778 2 55435803 to 55435816 13 + TSS region transcription start site region 17778
Tssr17779 2 55435890 to 55435916 26 + TSS region transcription start site region 17779
Cpgi11654 2 55435890 to 55436572 682 CpG island CpG island 11654
Tssr17780 2 55435918 to 55435949 31 + TSS region transcription start site region 17780
Kcnj3 2 55435970 to 55598145 162175 + protein coding gene potassium inwardly-rectifying channel, subfamily J, member 3
Tssr17781 2 55436388 to 55436399 11 + TSS region transcription start site region 17781
Tssr17782 2 55437100 to 55437182 82 + TSS region transcription start site region 17782
Cpgi11655 2 55437110 to 55437935 825 CpG island CpG island 11655
Tssr17783 2 55437190 to 55437201 11 + TSS region transcription start site region 17783
Tssr17784 2 55437524 to 55437535 11 + TSS region transcription start site region 17784
Tssr17785 2 55451699 to 55451703 4 + TSS region transcription start site region 17785
Tssr17786 2 55511542 to 55511546 4 + TSS region transcription start site region 17786
Tssr17787 2 55597292 to 55597307 15 + TSS region transcription start site region 17787
Tssr17788 2 55597317 to 55597343 26 + TSS region transcription start site region 17788
Tssr17789 2 55597348 to 55597362 14 + TSS region transcription start site region 17789
Tssr17790 2 55597520 to 55597543 23 + TSS region transcription start site region 17790
Tssr498 2 55726988 to 55726995 7 + TSS region transcription start site region 498
Gm13517 2 55775647 to 55776745 1098 + pseudogene predicted gene 13517
D2Mit157 2 55801538 to 55801673 135 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 157
D2Mit471 2 55801556 to 55801673 117 DNA segment DNA Segment, Chr 2 Massachusetts Institute of Technology 471
Dwh 2 55801673 to 7718847 -48082826 heritable phenotypic marker dispersed white hair
Gm13615 2 55970695 to 55972103 1408 - pseudogene predicted gene 13615
Gm13518 2 56039853 to 56040085 232 + pseudogene predicted gene 13518
2900083M14Rik 2 56265843 to 56266044 201 unclassified gene RIKEN cDNA 2900083M14 gene
D2Mit89 2 56627994 to 56628187 193 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 89
5730437C12Rik 2 56774843 to 56776295 1452 unclassified gene RIKEN cDNA 5730437C12 gene
Gm33458 2 56776738 to 56801304 24566 - lncRNA gene predicted gene, 33458
Mir195b 2 56785811 to 56785907 96 + miRNA gene microRNA 195b
Gm13527 2 57079748 to 57080438 690 + pseudogene predicted gene 13527
D2Mit156 2 57081653 to 57081799 146 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 156
Ltpr1 2 57081653 to 57081799 146 QTL Leishmania tropica response 1
Cpgi11656 2 57102204 to 57103119 915 CpG island CpG island 11656
Tssr24108 2 57106598 to 57106621 23 - TSS region transcription start site region 24108
Nr4a2 2 57106830 to 57124003 17173 - protein coding gene nuclear receptor subfamily 4, group A, member 2
Tssr24109 2 57107934 to 57107944 10 - TSS region transcription start site region 24109
Tssr24110 2 57108076 to 57108085 9 - TSS region transcription start site region 24110
Tssr24111 2 57108276 to 57108285 9 - TSS region transcription start site region 24111
Tssr24112 2 57108313 to 57108321 8 - TSS region transcription start site region 24112
Cpgi11657 2 57111476 to 57112134 658 CpG island CpG island 11657
Tssr24113 2 57113053 to 57113063 10 - TSS region transcription start site region 24113
Cpgi11658 2 57114153 to 57115705 1552 CpG island CpG island 11658
Tssr24114 2 57114748 to 57114780 32 - TSS region transcription start site region 24114
Tssr24115 2 57114905 to 57114916 11 - TSS region transcription start site region 24115
Tssr24116 2 57114923 to 57114955 32 - TSS region transcription start site region 24116
Tssr24117 2 57114970 to 57114975 5 - TSS region transcription start site region 24117
Tssr17791 2 57115126 to 57115162 36 + TSS region transcription start site region 17791
Cpgi11659 2 57115776 to 57117022 1246 CpG island CpG island 11659
Tssr24118 2 57116603 to 57116614 11 - TSS region transcription start site region 24118
Tssr17792 2 57116896 to 57116905 9 + TSS region transcription start site region 17792
D030020J04Rik 2 57118007 to 57122917 4910 unclassified gene RIKEN cDNA D030020J04 gene
Tssr24119 2 57122101 to 57122102 1 - TSS region transcription start site region 24119
2210008N01Rik 2 57123334 to 57124694 1360 - protein coding gene RIKEN cDNA 2210008N01 gene
Cpgi11660 2 57123411 to 57124660 1249 CpG island CpG island 11660
Tssr24120 2 57124056 to 57124071 15 - TSS region transcription start site region 24120
Tssr24121 2 57124132 to 57124147 15 - TSS region transcription start site region 24121
BB557941 2 57127479 to 57181754 54275 - lncRNA gene expressed sequence BB557941
Cpgi11661 2 57181657 to 57182145 488 CpG island CpG island 11661
Tssr24122 2 57181748 to 57181762 14 - TSS region transcription start site region 24122
4930555B11Rik 2 57181831 to 57188257 6426 + lncRNA gene RIKEN cDNA 4930555B11 gene
n-TAcgc8 2 57182078 to 57182149 71 + tRNA gene nuclear encoded tRNA alanine 8 (anticodon CGC)
n-TGgcc8 2 57182394 to 57182464 70 - tRNA gene nuclear encoded tRNA glycine 8 (anticodon GCC)
Atp5k-ps4 2 57214046 to 57214247 201 - pseudogene ATP synthase, H+ transporting, mitochondrial F1F0 complex, subunit E, pseudogene 4
Gm13526 2 57214054 to 57214242 188 - pseudogene predicted gene 13526
Gm39813 2 57223317 to 57224824 1507 + lncRNA gene predicted gene, 39813
A930012O16Rik 2 57236227 to 57238508 2281 - unclassified non-coding RNA gene RIKEN cDNA A930012O16 gene
Cpgi11662 2 57237633 to 57239087 1454 CpG island CpG island 11662
Tssr17793 2 57237651 to 57237729 78 + TSS region transcription start site region 17793
Gpd2 2 57237678 to 57370719 133041 + protein coding gene glycerol phosphate dehydrogenase 2, mitochondrial
Tssr24123 2 57238310 to 57238346 36 - TSS region transcription start site region 24123
Tssr17794 2 57238414 to 57238425 11 + TSS region transcription start site region 17794
Tssr17795 2 57238427 to 57238459 32 + TSS region transcription start site region 17795
Tssr17796 2 57238463 to 57238482 19 + TSS region transcription start site region 17796
Tssr24124 2 57238758 to 57238764 6 - TSS region transcription start site region 24124
Tssr17797 2 57265101 to 57265130 29 + TSS region transcription start site region 17797
Tssr17798 2 57265137 to 57265158 21 + TSS region transcription start site region 17798
Tssr17799 2 57267359 to 57267363 4 + TSS region transcription start site region 17799
Tssr17800 2 57268518 to 57268536 18 + TSS region transcription start site region 17800
Gm13535 2 57272526 to 57275525 2999 - pseudogene predicted gene 13535
Tssr24125 2 57292443 to 57292461 18 - TSS region transcription start site region 24125
Tssr17801 2 57295813 to 57295817 4 + TSS region transcription start site region 17801
D2Mit433 2 57297111 to 57297283 172 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology 433
Pbwg1.3 2 57297111 to 65302151 8005040 QTL postnatal body weight growth 1.3
Tssr24126 2 57297437 to 57297448 11 - TSS region transcription start site region 24126
Tssr24127 2 57297560 to 57297627 67 - TSS region transcription start site region 24127
Tssr24128 2 57297633 to 57297646 13 - TSS region transcription start site region 24128
Tssr17802 2 57317406 to 57317445 39 + TSS region transcription start site region 17802
Tssr17803 2 57330161 to 57330201 40 + TSS region transcription start site region 17803
D2Mit242 2 57349961 to 57350096 135 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 242
Tssr17804 2 57359758 to 57359763 5 + TSS region transcription start site region 17804
Tssr17805 2 57367463 to 57367474 11 + TSS region transcription start site region 17805
Tssr17806 2 57367494 to 57367528 34 + TSS region transcription start site region 17806
Tssr24129 2 57367638 to 57367672 34 - TSS region transcription start site region 24129
Tssr17807 2 57368417 to 57368432 15 + TSS region transcription start site region 17807
Tssr17808 2 57368448 to 57368465 17 + TSS region transcription start site region 17808
Tssr17809 2 57369306 to 57369318 12 + TSS region transcription start site region 17809
Tssr17810 2 57372656 to 57372665 9 + TSS region transcription start site region 17810
Gm13531 2 57425167 to 57425709 542 - pseudogene predicted gene 13531
Gm18845 2 57562775 to 57563931 1156 + pseudogene predicted gene, 18845
Gm13532 2 57628989 to 57629228 239 - pseudogene predicted gene 13532
Gm13533 2 57643648 to 57643824 176 - pseudogene predicted gene 13533
Gm25388 2 57653672 to 57653822 150 - snoRNA gene predicted gene, 25388
Gm33594 2 57982192 to 57986017 3825 - lincRNA gene predicted gene, 33594
Galnt5 2 57997263 to 58041027 43764 + protein coding gene polypeptide N-acetylgalactosaminyltransferase 5
Ermn 2 58045115 to 58052752 7637 - protein coding gene ermin, ERM-like protein
Tssr24130 2 58052810 to 58052829 19 - TSS region transcription start site region 24130
Tssr24131 2 58052832 to 58052870 38 - TSS region transcription start site region 24131
Gm13534 2 58108060 to 58108572 512 + pseudogene predicted gene 13534
Cytip 2 58129137 to 58195532 66395 - protein coding gene cytohesin 1 interacting protein
Tssr24132 2 58137744 to 58137780 36 - TSS region transcription start site region 24132
Tssr24133 2 58139331 to 58139336 5 - TSS region transcription start site region 24133
Tssr17811 2 58153872 to 58153886 14 + TSS region transcription start site region 17811
Tssr17812 2 58154004 to 58154014 10 + TSS region transcription start site region 17812
Tssr17813 2 58154022 to 58154032 10 + TSS region transcription start site region 17813
Tssr24134 2 58155790 to 58155807 17 - TSS region transcription start site region 24134
Tssr17814 2 58156236 to 58156273 37 + TSS region transcription start site region 17814
Tssr24135 2 58156804 to 58156818 14 - TSS region transcription start site region 24135
Tssr24136 2 58156965 to 58156986 21 - TSS region transcription start site region 24136
Tssr24137 2 58157006 to 58157017 11 - TSS region transcription start site region 24137
Tssr24138 2 58157046 to 58157052 6 - TSS region transcription start site region 24138
Tssr24139 2 58157064 to 58157089 25 - TSS region transcription start site region 24139
Tssr24140 2 58157109 to 58157121 12 - TSS region transcription start site region 24140
Tssr17815 2 58157164 to 58157172 8 + TSS region transcription start site region 17815
Tssr17816 2 58157199 to 58157227 28 + TSS region transcription start site region 17816
Tssr17817 2 58157538 to 58157556 18 + TSS region transcription start site region 17817
Tssr24141 2 58159193 to 58159211 18 - TSS region transcription start site region 24141
Cpgi11663 2 58159811 to 58159994 183 CpG island CpG island 11663
Tssr17818 2 58159908 to 58159912 4 + TSS region transcription start site region 17818
Tssr24142 2 58160114 to 58160128 14 - TSS region transcription start site region 24142
Tssr17819 2 58160187 to 58160199 12 + TSS region transcription start site region 17819
Tssr17820 2 58160214 to 58160228 14 + TSS region transcription start site region 17820
Tssr24143 2 58160483 to 58160492 9 - TSS region transcription start site region 24143
Tssr24144 2 58160623 to 58160635 12 - TSS region transcription start site region 24144
Tssr24145 2 58160651 to 58160664 13 - TSS region transcription start site region 24145
Tssr24146 2 58160785 to 58160805 20 - TSS region transcription start site region 24146
Tssr17821 2 58161023 to 58161032 9 + TSS region transcription start site region 17821
Tssr24147 2 58161072 to 58161110 38 - TSS region transcription start site region 24147
Tssr17822 2 58161095 to 58161102 7 + TSS region transcription start site region 17822
Tssr24148 2 58163740 to 58163776 36 - TSS region transcription start site region 24148
Tssr17823 2 58163951 to 58163996 45 + TSS region transcription start site region 17823
Gm13546 2 58164001 to 58177063 13062 + antisense lncRNA gene predicted gene 13546
Tssr17824 2 58194743 to 58194750 7 + TSS region transcription start site region 17824
Tssr24149 2 58195474 to 58195491 17 - TSS region transcription start site region 24149
Tssr24150 2 58195501 to 58195552 51 - TSS region transcription start site region 24150
Tssr499 2 58238999 to 58239000 1 + TSS region transcription start site region 499
Acvr1c 2 58267453 to 58357895 90442 - protein coding gene activin A receptor, type IC
Tssr24151 2 58268033 to 58268037 4 - TSS region transcription start site region 24151
Gm13544 2 58276779 to 58286902 10123 + antisense lncRNA gene predicted gene 13544
Cpgi11664 2 58324387 to 58324735 348 CpG island CpG island 11664
Gm13545 2 58338347 to 58338828 481 + pseudogene predicted gene 13545
Cpgi11665 2 58357172 to 58358293 1121 CpG island CpG island 11665
Tssr24152 2 58357778 to 58357817 39 - TSS region transcription start site region 24152
Acvr1 2 58446438 to 58566828 120390 - protein coding gene activin A receptor, type 1
Gm17409 2 58470116 to 58471077 961 + protein coding gene predicted gene, 17409
Cpgi11666 2 58566118 to 58567918 1800 CpG island CpG island 11666
Tssr24153 2 58567021 to 58567032 11 - TSS region transcription start site region 24153
Tssr24154 2 58567157 to 58567288 131 - TSS region transcription start site region 24154
Tssr17825 2 58567290 to 58567322 32 + TSS region transcription start site region 17825
Upp2 2 58567298 to 58792971 225673 + protein coding gene uridine phosphorylase 2
Tssr17826 2 58567360 to 58567408 48 + TSS region transcription start site region 17826
Tssr24155 2 58567598 to 58567611 13 - TSS region transcription start site region 24155
Gm13558 2 58705769 to 58735396 29627 + sense intronic lncRNA gene predicted gene 13558
Gm13559 2 58740639 to 58741501 862 + pseudogene predicted gene 13559
Tssr24156 2 58743523 to 58743526 3 - TSS region transcription start site region 24156
Tssr17827 2 58754910 to 58754921 11 + TSS region transcription start site region 17827
Tssr17828 2 58755177 to 58755195 18 + TSS region transcription start site region 17828
Tssr17829 2 58755677 to 58755687 10 + TSS region transcription start site region 17829
Tssr17830 2 58762257 to 58762274 17 + TSS region transcription start site region 17830
Tssr17831 2 58767271 to 58767291 20 + TSS region transcription start site region 17831
Tssr17832 2 58769636 to 58769637 1 + TSS region transcription start site region 17832
Tssr17833 2 58769763 to 58769772 9 + TSS region transcription start site region 17833