Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:53161865-54231871

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32 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Prpf40a 2 53134706 to 53191279 56573 - protein coding gene pre-mRNA processing factor 40A
D2Ertd612e 2 53163300 to 53163502 202 DNA segment DNA segment, Chr 2, ERATO Doi 612, expressed
Tssr24099 2 53190813 to 53190845 32 - TSS region transcription start site region 24099
Cpgi11651 2 53190867 to 53192684 1817 CpG island CpG island 11651
Tssr24100 2 53191195 to 53191209 14 - TSS region transcription start site region 24100
Tssr24101 2 53191214 to 53191260 46 - TSS region transcription start site region 24101
Tssr17757 2 53191466 to 53191480 14 + TSS region transcription start site region 17757
Tssr24102 2 53191970 to 53191985 15 - TSS region transcription start site region 24102
Tssr17758 2 53192067 to 53192100 33 + TSS region transcription start site region 17758
Arl6ip6 2 53192084 to 53219221 27137 + protein coding gene ADP-ribosylation factor-like 6 interacting protein 6
Tssr17759 2 53192101 to 53192128 27 + TSS region transcription start site region 17759
Tssr17760 2 53192166 to 53192177 11 + TSS region transcription start site region 17760
Gm25898 2 53274736 to 53274841 105 - snRNA gene predicted gene, 25898
Gm13501 2 53397509 to 53398487 978 - pseudogene predicted gene 13501
Tssr495 2 53486357 to 53486358 1 + TSS region transcription start site region 495
Gm13503 2 53551926 to 53552371 445 + pseudogene predicted gene 13503
Tssr17761 2 53605134 to 53605141 7 + TSS region transcription start site region 17761
Tssr17762 2 53605144 to 53605152 8 + TSS region transcription start site region 17762
Tssr17763 2 53605159 to 53605163 4 + TSS region transcription start site region 17763
Tssr496 2 53606375 to 53606403 28 + TSS region transcription start site region 496
Gm38481 2 53694370 to 53696853 2483 - protein coding gene predicted gene, 38481
Gm13502 2 53696121 to 53696804 683 - pseudogene predicted gene 13502
Tssr24103 2 53696865 to 53696871 6 - TSS region transcription start site region 24103
Gm23315 2 53700847 to 53700955 108 - snoRNA gene predicted gene, 23315
9030407C09Rik 2 53877773 to 53879479 1706 unclassified gene RIKEN cDNA 9030407C09 gene
Rprm 2 54084093 to 54085552 1459 - protein coding gene reprimo, TP53 dependent G2 arrest mediator candidate
Cpgi11652 2 54084661 to 54085794 1133 CpG island CpG island 11652
Tssr24104 2 54085407 to 54085418 11 - TSS region transcription start site region 24104
Tssr24105 2 54085489 to 54085541 52 - TSS region transcription start site region 24105
Tssr24106 2 54085542 to 54085559 17 - TSS region transcription start site region 24106
Tssr24107 2 54085562 to 54085573 11 - TSS region transcription start site region 24107
Gm22298 2 54100430 to 54100562 132 + snoRNA gene predicted gene, 22298