Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:5271062-6081065

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71 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm13197 2 5283650 to 5283874 224 + pseudogene predicted gene 13197
Camk1d 2 5293457 to 5714515 421058 - protein coding gene calcium/calmodulin-dependent protein kinase ID
Tssr22404 2 5296201 to 5296214 13 - TSS region transcription start site region 22404
Tssr22405 2 5297326 to 5297342 16 - TSS region transcription start site region 22405
Tssr22406 2 5306489 to 5306493 4 - TSS region transcription start site region 22406
Gm36906 2 5313211 to 5317500 4289 + lncRNA gene predicted gene, 36906
Tssr22407 2 5339868 to 5339873 5 - TSS region transcription start site region 22407
Tssr22408 2 5379336 to 5379360 24 - TSS region transcription start site region 22408
Tssr394 2 5394172 to 5394173 1 + TSS region transcription start site region 394
Tssr22409 2 5410936 to 5410941 5 - TSS region transcription start site region 22409
Tssr16003 2 5413246 to 5413248 2 + TSS region transcription start site region 16003
Gm36853 2 5488130 to 5496496 8366 + lncRNA gene predicted gene, 36853
Tssr22410 2 5538681 to 5538716 35 - TSS region transcription start site region 22410
Tssr22411 2 5538731 to 5538744 13 - TSS region transcription start site region 22411
Tssr16004 2 5603551 to 5603565 14 + TSS region transcription start site region 16004
Gm13216 2 5603571 to 5604161 590 + pseudogene predicted gene 13216
Tssr22412 2 5657395 to 5657407 12 - TSS region transcription start site region 22412
Tssr22413 2 5670286 to 5670307 21 - TSS region transcription start site region 22413
Tssr22414 2 5671515 to 5671520 5 - TSS region transcription start site region 22414
Tssr22415 2 5672967 to 5672969 2 - TSS region transcription start site region 22415
Tssr22416 2 5675991 to 5676025 34 - TSS region transcription start site region 22416
Tssr22417 2 5676062 to 5676065 3 - TSS region transcription start site region 22417
Tssr22418 2 5676955 to 5676969 14 - TSS region transcription start site region 22418
Tssr22419 2 5676983 to 5676993 10 - TSS region transcription start site region 22419
Tssr22420 2 5677533 to 5677545 12 - TSS region transcription start site region 22420
Tssr22421 2 5682032 to 5682037 5 - TSS region transcription start site region 22421
Tssr16005 2 5683715 to 5683718 3 + TSS region transcription start site region 16005
Tssr22422 2 5697881 to 5697899 18 - TSS region transcription start site region 22422
Tssr22423 2 5698012 to 5698020 8 - TSS region transcription start site region 22423
Cpgi11167 2 5713678 to 5715321 1643 CpG island CpG island 11167
Tssr22424 2 5714341 to 5714402 61 - TSS region transcription start site region 22424
Tssr22425 2 5714435 to 5714446 11 - TSS region transcription start site region 22425
Tssr22426 2 5714463 to 5714487 24 - TSS region transcription start site region 22426
Tssr22427 2 5714490 to 5714538 48 - TSS region transcription start site region 22427
Gm29857 2 5727992 to 5746476 18484 + lncRNA gene predicted gene, 29857
Cpgi11168 2 5746381 to 5746612 231 CpG island CpG island 11168
Tssr22428 2 5760700 to 5760713 13 - TSS region transcription start site region 22428
Cdc123 2 5794294 to 5844968 50674 - protein coding gene cell division cycle 123
Gm29984 2 5825418 to 5830815 5397 + lncRNA gene predicted gene, 29984
Cpgi11169 2 5844620 to 5845694 1074 CpG island CpG island 11169
Tssr22429 2 5844917 to 5844985 68 - TSS region transcription start site region 22429
Tssr16006 2 5845017 to 5845062 45 + TSS region transcription start site region 16006
Nudt5 2 5845034 to 5870820 25786 + protein coding gene nudix (nucleoside diphosphate linked moiety X)-type motif 5
Tssr16007 2 5845243 to 5845311 68 + TSS region transcription start site region 16007
Tssr16008 2 5848120 to 5848134 14 + TSS region transcription start site region 16008
Tssr16009 2 5852845 to 5852857 12 + TSS region transcription start site region 16009
Gm13199 2 5862080 to 5862934 854 - protein coding gene predicted gene 13199
Sec61a2 2 5870987 to 5895432 24445 - protein coding gene Sec61, alpha subunit 2 (S. cerevisiae)
B930028L11Rik 2 5887225 to 5889499 2274 unclassified gene RIKEN cDNA B930028L11 gene
Cpgi11170 2 5894950 to 5895579 629 CpG island CpG island 11170
Tssr22430 2 5895325 to 5895408 83 - TSS region transcription start site region 22430
Tssr16010 2 5895456 to 5895475 19 + TSS region transcription start site region 16010
Tssr16011 2 5895489 to 5895513 24 + TSS region transcription start site region 16011
Gm13267 2 5895510 to 5900131 4621 + antisense lncRNA gene predicted gene 13267
Dhtkd1 2 5896115 to 5942792 46677 - protein coding gene dehydrogenase E1 and transketolase domain containing 1
Gm10859 2 5911952 to 5914498 2546 unclassified gene predicted gene 10859
Tssr22431 2 5925268 to 5925272 4 - TSS region transcription start site region 22431
Tssr22432 2 5934533 to 5934535 2 - TSS region transcription start site region 22432
Cpgi11171 2 5942388 to 5942796 408 CpG island CpG island 11171
Tssr22433 2 5942719 to 5942729 10 - TSS region transcription start site region 22433
Tssr22434 2 5942740 to 5942804 64 - TSS region transcription start site region 22434
Cpgi11172 2 5950854 to 5951025 171 CpG island CpG island 11172
Cpgi11173 2 5951054 to 5952232 1178 CpG island CpG island 11173
Tssr16012 2 5951440 to 5951468 28 + TSS region transcription start site region 16012
Upf2 2 5951469 to 6056703 105234 + protein coding gene UPF2 regulator of nonsense transcripts homolog (yeast)
Tssr16013 2 5951480 to 5951536 56 + TSS region transcription start site region 16013
Tssr16014 2 5951568 to 5951589 21 + TSS region transcription start site region 16014
Tssr16015 2 5954581 to 5954621 40 + TSS region transcription start site region 16015
Tssr16016 2 5957460 to 5957473 13 + TSS region transcription start site region 16016
Tssr16017 2 5957597 to 5957620 23 + TSS region transcription start site region 16017
Gm30136 2 6079581 to 6083053 3472 + lncRNA gene predicted gene, 30136