Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:52666865-54726871

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104 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cacnb4 2 52428320 to 52676609 248289 - protein coding gene calcium channel, voltage-dependent, beta 4 subunit
Tssr24083 2 52674742 to 52674745 3 - TSS region transcription start site region 24083
Cpgi11648 2 52675037 to 52676793 1756 CpG island CpG island 11648
Tssr24084 2 52676084 to 52676099 15 - TSS region transcription start site region 24084
Tssr24085 2 52676101 to 52676116 15 - TSS region transcription start site region 24085
Tssr24086 2 52676119 to 52676146 27 - TSS region transcription start site region 24086
Tssr24087 2 52676571 to 52676588 17 - TSS region transcription start site region 24087
Tssr24088 2 52676600 to 52676631 31 - TSS region transcription start site region 24088
Gm46740 2 52676827 to 52679338 2511 + lncRNA gene predicted gene, 46740
Stam2 2 52692206 to 52742149 49943 - protein coding gene signal transducing adaptor molecule (SH3 domain and ITAM motif) 2
Gm46741 2 52696299 to 52699066 2767 - protein coding gene predicted gene, 46741
D2Ertd112e 2 52722719 to 52722954 235 DNA segment DNA segment, Chr 2, ERATO Doi 112, expressed
Tssr24089 2 52730686 to 52730691 5 - TSS region transcription start site region 24089
Tssr17729 2 52732268 to 52732273 5 + TSS region transcription start site region 17729
Gm13548 2 52739071 to 52739455 384 - pseudogene predicted gene 13548
Cpgi11649 2 52741662 to 52743042 1380 CpG island CpG island 11649
Tssr24090 2 52742142 to 52742156 14 - TSS region transcription start site region 24090
Tssr24091 2 52742169 to 52742217 48 - TSS region transcription start site region 24091
Tssr24092 2 52742402 to 52742441 39 - TSS region transcription start site region 24092
Cpgi11650 2 52857338 to 52859050 1712 CpG island CpG island 11650
Tssr17730 2 52857744 to 52857798 54 + TSS region transcription start site region 17730
Tssr17731 2 52857801 to 52857826 25 + TSS region transcription start site region 17731
Tssr17732 2 52857828 to 52857837 9 + TSS region transcription start site region 17732
Tssr17733 2 52857844 to 52857851 7 + TSS region transcription start site region 17733
Fmnl2 2 52857860 to 53133804 275944 + protein coding gene formin-like 2
Gm26603 2 52859723 to 52863516 3793 - lincRNA gene predicted gene, 26603
Tssr17734 2 52866642 to 52866645 3 + TSS region transcription start site region 17734
5230400M03Rik 2 52866643 to 52870362 3719 unclassified non-coding RNA gene RIKEN cDNA 5230400M03 gene
Tssr17735 2 52868429 to 52868439 10 + TSS region transcription start site region 17735
Tssr17736 2 52872121 to 52872133 12 + TSS region transcription start site region 17736
Tssr17737 2 52872171 to 52872196 25 + TSS region transcription start site region 17737
Tssr17738 2 52882005 to 52882009 4 + TSS region transcription start site region 17738
Tssr17739 2 52892118 to 52892123 5 + TSS region transcription start site region 17739
Tssr17740 2 52899386 to 52899389 3 + TSS region transcription start site region 17740
D2Mit270 2 52907312 to 52907394 82 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 270
Pbwg1.6 2 52907312 to 52907394 82 QTL postnatal body weight growth 1.6
Pbwg1.7 2 52907312 to 52907394 82 QTL postnatal body weight growth 1.7
Pbwg1.8 2 52907312 to 52907394 82 QTL postnatal body weight growth 1.8
D2Ertd295e 2 52915645 to 52915879 234 DNA segment DNA segment, Chr 2, ERATO Doi 295, expressed
Tssr17741 2 52927612 to 52927642 30 + TSS region transcription start site region 17741
Tssr17742 2 52927643 to 52927655 12 + TSS region transcription start site region 17742
Tssr17743 2 52938640 to 52938670 30 + TSS region transcription start site region 17743
Tssr17744 2 52952669 to 52952704 35 + TSS region transcription start site region 17744
Tssr17745 2 52967677 to 52967687 10 + TSS region transcription start site region 17745
Tssr17746 2 52967688 to 52967699 11 + TSS region transcription start site region 17746
Tssr17747 2 52967704 to 52967715 11 + TSS region transcription start site region 17747
Tssr17748 2 52976940 to 52976948 8 + TSS region transcription start site region 17748
Tssr17749 2 52982748 to 52982749 1 + TSS region transcription start site region 17749
Tssr24093 2 52998153 to 52998158 5 - TSS region transcription start site region 24093
Tssr17750 2 53015496 to 53015500 4 + TSS region transcription start site region 17750
Tssr17751 2 53054542 to 53054569 27 + TSS region transcription start site region 17751
Tssr17752 2 53103725 to 53103738 13 + TSS region transcription start site region 17752
Tssr17753 2 53107590 to 53107629 39 + TSS region transcription start site region 17753
Tssr17754 2 53123872 to 53123886 14 + TSS region transcription start site region 17754
Tssr17755 2 53128865 to 53128870 5 + TSS region transcription start site region 17755
Tssr17756 2 53132811 to 53132825 14 + TSS region transcription start site region 17756
Prpf40a 2 53134706 to 53191279 56573 - protein coding gene pre-mRNA processing factor 40A
Tssr24094 2 53138107 to 53138120 13 - TSS region transcription start site region 24094
Tssr24095 2 53145350 to 53145376 26 - TSS region transcription start site region 24095
Tssr24096 2 53145899 to 53145924 25 - TSS region transcription start site region 24096
Tssr24097 2 53146139 to 53146156 17 - TSS region transcription start site region 24097
Tssr24098 2 53153078 to 53153095 17 - TSS region transcription start site region 24098
D2Ertd612e 2 53163300 to 53163502 202 DNA segment DNA segment, Chr 2, ERATO Doi 612, expressed
Tssr24099 2 53190813 to 53190845 32 - TSS region transcription start site region 24099
Cpgi11651 2 53190867 to 53192684 1817 CpG island CpG island 11651
Tssr24100 2 53191195 to 53191209 14 - TSS region transcription start site region 24100
Tssr24101 2 53191214 to 53191260 46 - TSS region transcription start site region 24101
Tssr17757 2 53191466 to 53191480 14 + TSS region transcription start site region 17757
Tssr24102 2 53191970 to 53191985 15 - TSS region transcription start site region 24102
Tssr17758 2 53192067 to 53192100 33 + TSS region transcription start site region 17758
Arl6ip6 2 53192084 to 53219221 27137 + protein coding gene ADP-ribosylation factor-like 6 interacting protein 6
Tssr17759 2 53192101 to 53192128 27 + TSS region transcription start site region 17759
Tssr17760 2 53192166 to 53192177 11 + TSS region transcription start site region 17760
Gm25898 2 53274736 to 53274841 105 - snRNA gene predicted gene, 25898
Gm13501 2 53397509 to 53398487 978 - pseudogene predicted gene 13501
Tssr495 2 53486357 to 53486358 1 + TSS region transcription start site region 495
Gm13503 2 53551926 to 53552371 445 + pseudogene predicted gene 13503
Tssr17761 2 53605134 to 53605141 7 + TSS region transcription start site region 17761
Tssr17762 2 53605144 to 53605152 8 + TSS region transcription start site region 17762
Tssr17763 2 53605159 to 53605163 4 + TSS region transcription start site region 17763
Tssr496 2 53606375 to 53606403 28 + TSS region transcription start site region 496
Gm38481 2 53694370 to 53696853 2483 - protein coding gene predicted gene, 38481
Gm13502 2 53696121 to 53696804 683 - pseudogene predicted gene 13502
Tssr24103 2 53696865 to 53696871 6 - TSS region transcription start site region 24103
Gm23315 2 53700847 to 53700955 108 - snoRNA gene predicted gene, 23315
9030407C09Rik 2 53877773 to 53879479 1706 unclassified gene RIKEN cDNA 9030407C09 gene
Rprm 2 54084093 to 54085552 1459 - protein coding gene reprimo, TP53 dependent G2 arrest mediator candidate
Cpgi11652 2 54084661 to 54085794 1133 CpG island CpG island 11652
Tssr24104 2 54085407 to 54085418 11 - TSS region transcription start site region 24104
Tssr24105 2 54085489 to 54085541 52 - TSS region transcription start site region 24105
Tssr24106 2 54085542 to 54085559 17 - TSS region transcription start site region 24106
Tssr24107 2 54085562 to 54085573 11 - TSS region transcription start site region 24107
Gm22298 2 54100430 to 54100562 132 + snoRNA gene predicted gene, 22298
Gm13505 2 54240569 to 54241376 807 + pseudogene predicted gene 13505
Gm14035 2 54284037 to 54285475 1438 + pseudogene predicted gene 14035
Gm14034 2 54356341 to 54356891 550 - pseudogene predicted gene 14034
Gm46742 2 54422573 to 54436077 13504 - lncRNA gene predicted gene, 46742
Cpgi11653 2 54435936 to 54437250 1314 CpG island CpG island 11653
Galnt13 2 54436317 to 55118309 681992 + protein coding gene polypeptide N-acetylgalactosaminyltransferase 13
Tssr17764 2 54436374 to 54436422 48 + TSS region transcription start site region 17764
Tssr17765 2 54436432 to 54436441 9 + TSS region transcription start site region 17765
Gm24549 2 54565998 to 54566136 138 - snoRNA gene predicted gene, 24549
D2Jpk3 2 54580729 to 54580849 120 DNA segment DNA segment, Chr 2, Japan, Kominami 3
Tssr497 2 54610642 to 54610643 1 + TSS region transcription start site region 497