Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:52373320-52731609

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37 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm13522 2 52378594 to 52390308 11714 + antisense lncRNA gene predicted gene 13522
Arl5a 2 52397949 to 52424874 26925 - protein coding gene ADP-ribosylation factor-like 5A
Tssr24070 2 52399783 to 52399807 24 - TSS region transcription start site region 24070
Tssr24071 2 52401310 to 52401328 18 - TSS region transcription start site region 24071
Cpgi11647 2 52424191 to 52425158 967 CpG island CpG island 11647
Tssr24072 2 52424795 to 52424806 11 - TSS region transcription start site region 24072
Tssr24073 2 52424811 to 52424822 11 - TSS region transcription start site region 24073
Tssr24074 2 52424826 to 52424916 90 - TSS region transcription start site region 24074
Tssr494 2 52424917 to 52424943 26 - TSS region transcription start site region 494
Tssr17726 2 52425004 to 52425021 17 + TSS region transcription start site region 17726
A430018G15Rik 2 52425012 to 52434885 9873 + unclassified non-coding RNA gene RIKEN cDNA A430018G15 gene
Tssr17727 2 52425241 to 52425246 5 + TSS region transcription start site region 17727
Cacnb4 2 52428320 to 52676609 248289 - protein coding gene calcium channel, voltage-dependent, beta 4 subunit
Tssr24075 2 52455699 to 52455723 24 - TSS region transcription start site region 24075
Tssr24076 2 52470997 to 52471011 14 - TSS region transcription start site region 24076
Tssr24077 2 52530637 to 52530640 3 - TSS region transcription start site region 24077
Gm13541 2 52551969 to 52552251 282 + pseudogene predicted gene 13541
Tssr24078 2 52558528 to 52558537 9 - TSS region transcription start site region 24078
Tssr24079 2 52558539 to 52558571 32 - TSS region transcription start site region 24079
Tssr24080 2 52558578 to 52558601 23 - TSS region transcription start site region 24080
Tssr24081 2 52572553 to 52572556 3 - TSS region transcription start site region 24081
D730044P03Rik 2 52592142 to 52592513 371 unclassified gene RIKEN cDNA D730044P03 gene
Tssr24082 2 52615297 to 52615301 4 - TSS region transcription start site region 24082
Tssr17728 2 52619735 to 52619746 11 + TSS region transcription start site region 17728
Bloc1s2-ps 2 52619754 to 52620185 431 + pseudogene biogenesis of lysosomal organelles complex-1, subunit 2, pseudogene
Tssr24083 2 52674742 to 52674745 3 - TSS region transcription start site region 24083
Cpgi11648 2 52675037 to 52676793 1756 CpG island CpG island 11648
Tssr24084 2 52676084 to 52676099 15 - TSS region transcription start site region 24084
Tssr24085 2 52676101 to 52676116 15 - TSS region transcription start site region 24085
Tssr24086 2 52676119 to 52676146 27 - TSS region transcription start site region 24086
Tssr24087 2 52676571 to 52676588 17 - TSS region transcription start site region 24087
Tssr24088 2 52676600 to 52676631 31 - TSS region transcription start site region 24088
Gm46740 2 52676827 to 52679338 2511 + lncRNA gene predicted gene, 46740
Stam2 2 52692206 to 52742149 49943 - protein coding gene signal transducing adaptor molecule (SH3 domain and ITAM motif) 2
Gm46741 2 52696299 to 52699066 2767 - protein coding gene predicted gene, 46741
D2Ertd112e 2 52722719 to 52722954 235 DNA segment DNA segment, Chr 2, ERATO Doi 112, expressed
Tssr24089 2 52730686 to 52730691 5 - TSS region transcription start site region 24089