Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:52342206-53092149

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79 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm13521 2 52361624 to 52362489 865 - pseudogene predicted gene 13521
Tssr24067 2 52372509 to 52372532 23 - TSS region transcription start site region 24067
Tssr24068 2 52372536 to 52372550 14 - TSS region transcription start site region 24068
Tssr24069 2 52372560 to 52372569 9 - TSS region transcription start site region 24069
Gm13522 2 52378594 to 52390308 11714 + antisense lncRNA gene predicted gene 13522
Arl5a 2 52397949 to 52424874 26925 - protein coding gene ADP-ribosylation factor-like 5A
Tssr24070 2 52399783 to 52399807 24 - TSS region transcription start site region 24070
Tssr24071 2 52401310 to 52401328 18 - TSS region transcription start site region 24071
Cpgi11647 2 52424191 to 52425158 967 CpG island CpG island 11647
Tssr24072 2 52424795 to 52424806 11 - TSS region transcription start site region 24072
Tssr24073 2 52424811 to 52424822 11 - TSS region transcription start site region 24073
Tssr24074 2 52424826 to 52424916 90 - TSS region transcription start site region 24074
Tssr494 2 52424917 to 52424943 26 - TSS region transcription start site region 494
Tssr17726 2 52425004 to 52425021 17 + TSS region transcription start site region 17726
A430018G15Rik 2 52425012 to 52434885 9873 + unclassified non-coding RNA gene RIKEN cDNA A430018G15 gene
Tssr17727 2 52425241 to 52425246 5 + TSS region transcription start site region 17727
Cacnb4 2 52428320 to 52676609 248289 - protein coding gene calcium channel, voltage-dependent, beta 4 subunit
Tssr24075 2 52455699 to 52455723 24 - TSS region transcription start site region 24075
Tssr24076 2 52470997 to 52471011 14 - TSS region transcription start site region 24076
Tssr24077 2 52530637 to 52530640 3 - TSS region transcription start site region 24077
Gm13541 2 52551969 to 52552251 282 + pseudogene predicted gene 13541
Tssr24078 2 52558528 to 52558537 9 - TSS region transcription start site region 24078
Tssr24079 2 52558539 to 52558571 32 - TSS region transcription start site region 24079
Tssr24080 2 52558578 to 52558601 23 - TSS region transcription start site region 24080
Tssr24081 2 52572553 to 52572556 3 - TSS region transcription start site region 24081
D730044P03Rik 2 52592142 to 52592513 371 unclassified gene RIKEN cDNA D730044P03 gene
Tssr24082 2 52615297 to 52615301 4 - TSS region transcription start site region 24082
Tssr17728 2 52619735 to 52619746 11 + TSS region transcription start site region 17728
Bloc1s2-ps 2 52619754 to 52620185 431 + pseudogene biogenesis of lysosomal organelles complex-1, subunit 2, pseudogene
Tssr24083 2 52674742 to 52674745 3 - TSS region transcription start site region 24083
Cpgi11648 2 52675037 to 52676793 1756 CpG island CpG island 11648
Tssr24084 2 52676084 to 52676099 15 - TSS region transcription start site region 24084
Tssr24085 2 52676101 to 52676116 15 - TSS region transcription start site region 24085
Tssr24086 2 52676119 to 52676146 27 - TSS region transcription start site region 24086
Tssr24087 2 52676571 to 52676588 17 - TSS region transcription start site region 24087
Tssr24088 2 52676600 to 52676631 31 - TSS region transcription start site region 24088
Gm46740 2 52676827 to 52679338 2511 + lncRNA gene predicted gene, 46740
Stam2 2 52692206 to 52742149 49943 - protein coding gene signal transducing adaptor molecule (SH3 domain and ITAM motif) 2
Gm46741 2 52696299 to 52699066 2767 - protein coding gene predicted gene, 46741
D2Ertd112e 2 52722719 to 52722954 235 DNA segment DNA segment, Chr 2, ERATO Doi 112, expressed
Tssr24089 2 52730686 to 52730691 5 - TSS region transcription start site region 24089
Tssr17729 2 52732268 to 52732273 5 + TSS region transcription start site region 17729
Gm13548 2 52739071 to 52739455 384 - pseudogene predicted gene 13548
Cpgi11649 2 52741662 to 52743042 1380 CpG island CpG island 11649
Tssr24090 2 52742142 to 52742156 14 - TSS region transcription start site region 24090
Tssr24091 2 52742169 to 52742217 48 - TSS region transcription start site region 24091
Tssr24092 2 52742402 to 52742441 39 - TSS region transcription start site region 24092
Cpgi11650 2 52857338 to 52859050 1712 CpG island CpG island 11650
Tssr17730 2 52857744 to 52857798 54 + TSS region transcription start site region 17730
Tssr17731 2 52857801 to 52857826 25 + TSS region transcription start site region 17731
Tssr17732 2 52857828 to 52857837 9 + TSS region transcription start site region 17732
Tssr17733 2 52857844 to 52857851 7 + TSS region transcription start site region 17733
Fmnl2 2 52857860 to 53133804 275944 + protein coding gene formin-like 2
Gm26603 2 52859723 to 52863516 3793 - lincRNA gene predicted gene, 26603
Tssr17734 2 52866642 to 52866645 3 + TSS region transcription start site region 17734
5230400M03Rik 2 52866643 to 52870362 3719 unclassified non-coding RNA gene RIKEN cDNA 5230400M03 gene
Tssr17735 2 52868429 to 52868439 10 + TSS region transcription start site region 17735
Tssr17736 2 52872121 to 52872133 12 + TSS region transcription start site region 17736
Tssr17737 2 52872171 to 52872196 25 + TSS region transcription start site region 17737
Tssr17738 2 52882005 to 52882009 4 + TSS region transcription start site region 17738
Tssr17739 2 52892118 to 52892123 5 + TSS region transcription start site region 17739
Tssr17740 2 52899386 to 52899389 3 + TSS region transcription start site region 17740
D2Mit270 2 52907312 to 52907394 82 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 270
Pbwg1.7 2 52907312 to 52907394 82 QTL postnatal body weight growth 1.7
Pbwg1.8 2 52907312 to 52907394 82 QTL postnatal body weight growth 1.8
Pbwg1.6 2 52907312 to 52907394 82 QTL postnatal body weight growth 1.6
D2Ertd295e 2 52915645 to 52915879 234 DNA segment DNA segment, Chr 2, ERATO Doi 295, expressed
Tssr17741 2 52927612 to 52927642 30 + TSS region transcription start site region 17741
Tssr17742 2 52927643 to 52927655 12 + TSS region transcription start site region 17742
Tssr17743 2 52938640 to 52938670 30 + TSS region transcription start site region 17743
Tssr17744 2 52952669 to 52952704 35 + TSS region transcription start site region 17744
Tssr17745 2 52967677 to 52967687 10 + TSS region transcription start site region 17745
Tssr17746 2 52967688 to 52967699 11 + TSS region transcription start site region 17746
Tssr17747 2 52967704 to 52967715 11 + TSS region transcription start site region 17747
Tssr17748 2 52976940 to 52976948 8 + TSS region transcription start site region 17748
Tssr17749 2 52982748 to 52982749 1 + TSS region transcription start site region 17749
Tssr24093 2 52998153 to 52998158 5 - TSS region transcription start site region 24093
Tssr17750 2 53015496 to 53015500 4 + TSS region transcription start site region 17750
Tssr17751 2 53054542 to 53054569 27 + TSS region transcription start site region 17751