Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:5109336-5649360

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26 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi11166 2 5137393 to 5138395 1002 CpG island CpG island 11166
Tssr393 2 5137735 to 5137740 5 + TSS region transcription start site region 393
Gm26776 2 5137749 to 5230864 93115 - lincRNA gene predicted gene, 26776
Tssr16000 2 5137756 to 5137772 16 + TSS region transcription start site region 16000
Ccdc3 2 5137776 to 5230878 93102 + protein coding gene coiled-coil domain containing 3
Tssr16001 2 5137850 to 5137868 18 + TSS region transcription start site region 16001
Gm13198 2 5156555 to 5157107 552 + pseudogene predicted gene 13198
Gm46729 2 5215405 to 5220854 5449 + lncRNA gene predicted gene, 46729
Tssr16002 2 5230053 to 5230062 9 + TSS region transcription start site region 16002
Gm23118 2 5259929 to 5260115 186 - snRNA gene predicted gene, 23118
Gm13197 2 5283650 to 5283874 224 + pseudogene predicted gene 13197
Camk1d 2 5293457 to 5714515 421058 - protein coding gene calcium/calmodulin-dependent protein kinase ID
Tssr22404 2 5296201 to 5296214 13 - TSS region transcription start site region 22404
Tssr22405 2 5297326 to 5297342 16 - TSS region transcription start site region 22405
Tssr22406 2 5306489 to 5306493 4 - TSS region transcription start site region 22406
Gm36906 2 5313211 to 5317500 4289 + lncRNA gene predicted gene, 36906
Tssr22407 2 5339868 to 5339873 5 - TSS region transcription start site region 22407
Tssr22408 2 5379336 to 5379360 24 - TSS region transcription start site region 22408
Tssr394 2 5394172 to 5394173 1 + TSS region transcription start site region 394
Tssr22409 2 5410936 to 5410941 5 - TSS region transcription start site region 22409
Tssr16003 2 5413246 to 5413248 2 + TSS region transcription start site region 16003
Gm36853 2 5488130 to 5496496 8366 + lncRNA gene predicted gene, 36853
Tssr22410 2 5538681 to 5538716 35 - TSS region transcription start site region 22410
Tssr22411 2 5538731 to 5538744 13 - TSS region transcription start site region 22411
Tssr16004 2 5603551 to 5603565 14 + TSS region transcription start site region 16004
Gm13216 2 5603571 to 5604161 590 + pseudogene predicted gene 13216