Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:49969191-54880158

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277 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi11640 2 50065927 to 50067081 1154 CpG island CpG island 11640
Lypd6 2 50066429 to 50193569 127140 + protein coding gene LY6/PLAUR domain containing 6
Tssr17692 2 50066446 to 50066469 23 + TSS region transcription start site region 17692
Tssr17693 2 50066487 to 50066492 5 + TSS region transcription start site region 17693
Tssr491 2 50066521 to 50066528 7 + TSS region transcription start site region 491
Tssr17694 2 50235919 to 50235920 1 + TSS region transcription start site region 17694
D2Mit155 2 50257282 to 50257400 118 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 155
Mmadhc 2 50279881 to 50296801 16920 - protein coding gene methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria
Cpgi11641 2 50296342 to 50296954 612 CpG island CpG island 11641
Tssr24012 2 50296680 to 50296736 56 - TSS region transcription start site region 24012
Gm13483 2 50296810 to 50433967 137157 + lincRNA gene predicted gene 13483
Tssr17695 2 50296894 to 50296910 16 + TSS region transcription start site region 17695
Tssr17696 2 50297033 to 50297036 3 + TSS region transcription start site region 17696
Tssr24013 2 50297151 to 50297158 7 - TSS region transcription start site region 24013
Tssr24014 2 50297163 to 50297197 34 - TSS region transcription start site region 24014
Tssr24015 2 50297198 to 50297228 30 - TSS region transcription start site region 24015
Gm46739 2 50300377 to 50312240 11863 + lncRNA gene predicted gene, 46739
Tssr17697 2 50303275 to 50303292 17 + TSS region transcription start site region 17697
Tssr17698 2 50335614 to 50335618 4 + TSS region transcription start site region 17698
Gm48908 2 50380400 to 50412610 32210 + lincRNA gene predicted gene 48908
Tssr17699 2 50394925 to 50394933 8 + TSS region transcription start site region 17699
Gm13486 2 50409332 to 50409613 281 + pseudogene predicted gene 13486
D2Mit523 2 50415998 to 50416103 105 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology 523
Gm13488 2 50521682 to 50521860 178 - pseudogene predicted gene 13488
Gm13487 2 50522124 to 50522987 863 - pseudogene predicted gene 13487
Tssr24016 2 50523028 to 50523038 10 - TSS region transcription start site region 24016
Gm13485 2 50547914 to 50552258 4344 + lincRNA gene predicted gene 13485
Gm46784 2 50566442 to 50582107 15665 + lncRNA gene predicted gene, 46784
Gm13484 2 50657656 to 50658067 411 - pseudogene predicted gene 13484
Gm32232 2 50755929 to 50814503 58574 + lncRNA gene predicted gene, 32232
D2Mit458 2 50854155 to 50854275 120 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology 458
Gm39811 2 50894332 to 50922621 28289 - lncRNA gene predicted gene, 39811
Tssr17700 2 50909581 to 50909584 3 + TSS region transcription start site region 17700
Gm13498 2 50909684 to 50911846 2162 + pseudogene predicted gene 13498
Tssr17701 2 50910183 to 50910188 5 + TSS region transcription start site region 17701
Gm32360 2 51072306 to 51088366 16060 - lncRNA gene predicted gene, 32360
Gm39812 2 51083301 to 51105412 22111 + lncRNA gene predicted gene, 39812
Rnd3 2 51130439 to 51149111 18672 - protein coding gene Rho family GTPase 3
Tssr24017 2 51130860 to 51130863 3 - TSS region transcription start site region 24017
Tssr24018 2 51139943 to 51139948 5 - TSS region transcription start site region 24018
Cpgi11642 2 51147032 to 51149350 2318 CpG island CpG island 11642
Tssr24019 2 51149100 to 51149115 15 - TSS region transcription start site region 24019
Gm28639 2 51219382 to 51219862 480 + lincRNA gene predicted gene 28639
Gm13500 2 51231987 to 51232810 823 + pseudogene predicted gene 13500
Gm13497 2 51241831 to 51295945 54114 + lincRNA gene predicted gene 13497
Gm13499 2 51363572 to 51365499 1927 - lincRNA gene predicted gene 13499
1700057H21Rik 2 51421050 to 51437900 16850 - lincRNA gene RIKEN cDNA 1700057H21 gene
Tssr24020 2 51437877 to 51437913 36 - TSS region transcription start site region 24020
Gm32434 2 51438017 to 51447718 9701 + lncRNA gene predicted gene, 32434
Tssr24021 2 51447705 to 51447752 47 - TSS region transcription start site region 24021
Gm23505 2 51493653 to 51493782 129 - snoRNA gene predicted gene, 23505
Tssr492 2 51528878 to 51528880 2 + TSS region transcription start site region 492
Gm13494 2 51544977 to 51546071 1094 + pseudogene predicted gene 13494
Gm13491 2 51604114 to 51604348 234 - pseudogene predicted gene 13491
Tas2r134 2 51627511 to 51628407 896 + protein coding gene taste receptor, type 2, member 134
Gm13490 2 51656966 to 51732009 75043 - lincRNA gene predicted gene 13490
Tssr24022 2 51678186 to 51678190 4 - TSS region transcription start site region 24022
D2Mit243 2 51694208 to 51694329 121 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 243
D2Mit243.1 2 51694274 to 51694473 199 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 243.1
Gm13492 2 51817905 to 51818569 664 - pseudogene predicted gene 13492
Gm13493 2 51871126 to 51871618 492 - pseudogene predicted gene 13493
Rbm43 2 51924448 to 51935163 10715 - protein coding gene RNA binding motif protein 43
Tssr24023 2 51933304 to 51933320 16 - TSS region transcription start site region 24023
Tssr24024 2 51933333 to 51933340 7 - TSS region transcription start site region 24024
Cpgi11643 2 51934605 to 51935285 680 CpG island CpG island 11643
Tssr24025 2 51934690 to 51934710 20 - TSS region transcription start site region 24025
Tssr24026 2 51934943 to 51935015 72 - TSS region transcription start site region 24026
Gm13495 2 51938133 to 51938669 536 - pseudogene predicted gene 13495
Gm20588 2 51939416 to 51941011 1595 + pseudogene predicted gene, 20588
Nmi 2 51948487 to 51973494 25007 - protein coding gene N-myc (and STAT) interactor
Cpgi11644 2 51952392 to 51952588 196 CpG island CpG island 11644
Tssr17702 2 51972338 to 51972384 46 + TSS region transcription start site region 17702
Cpgi11645 2 51972676 to 51973129 453 CpG island CpG island 11645
Tssr24027 2 51972929 to 51972981 52 - TSS region transcription start site region 24027
Tssr24028 2 51972990 to 51973022 32 - TSS region transcription start site region 24028
Tssr24029 2 51973082 to 51973123 41 - TSS region transcription start site region 24029
Tssr24030 2 51973190 to 51973216 26 - TSS region transcription start site region 24030
Tssr24031 2 51973219 to 51973234 15 - TSS region transcription start site region 24031
Tssr17703 2 52037985 to 52038001 16 + TSS region transcription start site region 17703
Tssr17704 2 52038005 to 52038020 15 + TSS region transcription start site region 17704
Tssr17705 2 52038092 to 52038111 19 + TSS region transcription start site region 17705
Tnfaip6 2 52038113 to 52056681 18568 + protein coding gene tumor necrosis factor alpha induced protein 6
Tssr17706 2 52038142 to 52038155 13 + TSS region transcription start site region 17706
Tssr17707 2 52071509 to 52071531 22 + TSS region transcription start site region 17707
Tssr17708 2 52071543 to 52071552 9 + TSS region transcription start site region 17708
Tssr17709 2 52071554 to 52071566 12 + TSS region transcription start site region 17709
Tssr17710 2 52071571 to 52071597 26 + TSS region transcription start site region 17710
Tssr17711 2 52071605 to 52071617 12 + TSS region transcription start site region 17711
Tssr17712 2 52071877 to 52071883 6 + TSS region transcription start site region 17712
Tssr17713 2 52072317 to 52072328 11 + TSS region transcription start site region 17713
Tssr17714 2 52072333 to 52072346 13 + TSS region transcription start site region 17714
Cpgi11646 2 52072365 to 52073647 1282 CpG island CpG island 11646
Tssr17715 2 52072804 to 52072814 10 + TSS region transcription start site region 17715
Tssr17716 2 52072823 to 52072854 31 + TSS region transcription start site region 17716
Rif1 2 52072832 to 52122383 49551 + protein coding gene replication timing regulatory factor 1
Tssr17717 2 52072861 to 52072878 17 + TSS region transcription start site region 17717
Tssr17718 2 52072895 to 52072906 11 + TSS region transcription start site region 17718
Tssr17719 2 52073099 to 52073141 42 + TSS region transcription start site region 17719
Tssr17720 2 52110187 to 52110201 14 + TSS region transcription start site region 17720
Tssr17721 2 52120981 to 52120988 7 + TSS region transcription start site region 17721
Tssr17722 2 52121463 to 52121477 14 + TSS region transcription start site region 17722
Neb 2 52136640 to 52338798 202158 - protein coding gene nebulin
Tssr24032 2 52151430 to 52151435 5 - TSS region transcription start site region 24032
Tssr17723 2 52163725 to 52163728 3 + TSS region transcription start site region 17723
Tssr24033 2 52169120 to 52169141 21 - TSS region transcription start site region 24033
Tssr24034 2 52169921 to 52169950 29 - TSS region transcription start site region 24034
Tssr24035 2 52170508 to 52170519 11 - TSS region transcription start site region 24035
Tssr24036 2 52175133 to 52175147 14 - TSS region transcription start site region 24036
Tssr24037 2 52186081 to 52186092 11 - TSS region transcription start site region 24037
Tssr24038 2 52188737 to 52188761 24 - TSS region transcription start site region 24038
Tssr24039 2 52189654 to 52189672 18 - TSS region transcription start site region 24039
Tssr24040 2 52194433 to 52194445 12 - TSS region transcription start site region 24040
Tssr24041 2 52201461 to 52201474 13 - TSS region transcription start site region 24041
Tssr24042 2 52205685 to 52205696 11 - TSS region transcription start site region 24042
Tssr24043 2 52206218 to 52206226 8 - TSS region transcription start site region 24043
Tssr24044 2 52206949 to 52206969 20 - TSS region transcription start site region 24044
Tssr24045 2 52212766 to 52212776 10 - TSS region transcription start site region 24045
Tssr24046 2 52232966 to 52232995 29 - TSS region transcription start site region 24046
Tssr24047 2 52235592 to 52235603 11 - TSS region transcription start site region 24047
Tssr24048 2 52263608 to 52263619 11 - TSS region transcription start site region 24048
Tssr24049 2 52263659 to 52263668 9 - TSS region transcription start site region 24049
Tssr24050 2 52271129 to 52271143 14 - TSS region transcription start site region 24050
Tssr24051 2 52272963 to 52272972 9 - TSS region transcription start site region 24051
Tssr24052 2 52277512 to 52277531 19 - TSS region transcription start site region 24052
Gm22095 2 52283077 to 52283226 149 + miRNA gene predicted gene, 22095
Tssr24053 2 52286108 to 52286125 17 - TSS region transcription start site region 24053
Tssr24054 2 52289690 to 52289708 18 - TSS region transcription start site region 24054
4930573O16Rik 2 52291002 to 52315240 24238 + lncRNA gene RIKEN cDNA 4930573O16 gene
Tssr24055 2 52291158 to 52291169 11 - TSS region transcription start site region 24055
Tssr24056 2 52292863 to 52292885 22 - TSS region transcription start site region 24056
Tssr24057 2 52307712 to 52307723 11 - TSS region transcription start site region 24057
Tssr24058 2 52308339 to 52308351 12 - TSS region transcription start site region 24058
Tssr24059 2 52308522 to 52308547 25 - TSS region transcription start site region 24059
Tssr17724 2 52313823 to 52313850 27 + TSS region transcription start site region 17724
Tssr24060 2 52319239 to 52319247 8 - TSS region transcription start site region 24060
Tssr493 2 52319252 to 52319264 12 - TSS region transcription start site region 493
Tssr24061 2 52319663 to 52319674 11 - TSS region transcription start site region 24061
Tssr24062 2 52326974 to 52326981 7 - TSS region transcription start site region 24062
Tssr17725 2 52326997 to 52327011 14 + TSS region transcription start site region 17725
Tssr24063 2 52335182 to 52335200 18 - TSS region transcription start site region 24063
Tssr24064 2 52335241 to 52335252 11 - TSS region transcription start site region 24064
Tssr24065 2 52335263 to 52335283 20 - TSS region transcription start site region 24065
Tssr24066 2 52335752 to 52335767 15 - TSS region transcription start site region 24066
Gm13521 2 52361624 to 52362489 865 - pseudogene predicted gene 13521
Tssr24067 2 52372509 to 52372532 23 - TSS region transcription start site region 24067
Tssr24068 2 52372536 to 52372550 14 - TSS region transcription start site region 24068
Tssr24069 2 52372560 to 52372569 9 - TSS region transcription start site region 24069
Gm13522 2 52378594 to 52390308 11714 + antisense lncRNA gene predicted gene 13522
Arl5a 2 52397949 to 52424874 26925 - protein coding gene ADP-ribosylation factor-like 5A
Tssr24070 2 52399783 to 52399807 24 - TSS region transcription start site region 24070
Tssr24071 2 52401310 to 52401328 18 - TSS region transcription start site region 24071
Cpgi11647 2 52424191 to 52425158 967 CpG island CpG island 11647
Tssr24072 2 52424795 to 52424806 11 - TSS region transcription start site region 24072
Tssr24073 2 52424811 to 52424822 11 - TSS region transcription start site region 24073
Tssr24074 2 52424826 to 52424916 90 - TSS region transcription start site region 24074
Tssr494 2 52424917 to 52424943 26 - TSS region transcription start site region 494
Tssr17726 2 52425004 to 52425021 17 + TSS region transcription start site region 17726
A430018G15Rik 2 52425012 to 52434885 9873 + unclassified non-coding RNA gene RIKEN cDNA A430018G15 gene
Tssr17727 2 52425241 to 52425246 5 + TSS region transcription start site region 17727
Cacnb4 2 52428320 to 52676609 248289 - protein coding gene calcium channel, voltage-dependent, beta 4 subunit
Tssr24075 2 52455699 to 52455723 24 - TSS region transcription start site region 24075
Tssr24076 2 52470997 to 52471011 14 - TSS region transcription start site region 24076
Tssr24077 2 52530637 to 52530640 3 - TSS region transcription start site region 24077
Gm13541 2 52551969 to 52552251 282 + pseudogene predicted gene 13541
Tssr24078 2 52558528 to 52558537 9 - TSS region transcription start site region 24078
Tssr24079 2 52558539 to 52558571 32 - TSS region transcription start site region 24079
Tssr24080 2 52558578 to 52558601 23 - TSS region transcription start site region 24080
Tssr24081 2 52572553 to 52572556 3 - TSS region transcription start site region 24081
D730044P03Rik 2 52592142 to 52592513 371 unclassified gene RIKEN cDNA D730044P03 gene
Tssr24082 2 52615297 to 52615301 4 - TSS region transcription start site region 24082
Tssr17728 2 52619735 to 52619746 11 + TSS region transcription start site region 17728
Bloc1s2-ps 2 52619754 to 52620185 431 + pseudogene biogenesis of lysosomal organelles complex-1, subunit 2, pseudogene
Tssr24083 2 52674742 to 52674745 3 - TSS region transcription start site region 24083
Cpgi11648 2 52675037 to 52676793 1756 CpG island CpG island 11648
Tssr24084 2 52676084 to 52676099 15 - TSS region transcription start site region 24084
Tssr24085 2 52676101 to 52676116 15 - TSS region transcription start site region 24085
Tssr24086 2 52676119 to 52676146 27 - TSS region transcription start site region 24086
Tssr24087 2 52676571 to 52676588 17 - TSS region transcription start site region 24087
Tssr24088 2 52676600 to 52676631 31 - TSS region transcription start site region 24088
Gm46740 2 52676827 to 52679338 2511 + lncRNA gene predicted gene, 46740
Stam2 2 52692206 to 52742149 49943 - protein coding gene signal transducing adaptor molecule (SH3 domain and ITAM motif) 2
Gm46741 2 52696299 to 52699066 2767 - protein coding gene predicted gene, 46741
D2Ertd112e 2 52722719 to 52722954 235 DNA segment DNA segment, Chr 2, ERATO Doi 112, expressed
Tssr24089 2 52730686 to 52730691 5 - TSS region transcription start site region 24089
Tssr17729 2 52732268 to 52732273 5 + TSS region transcription start site region 17729
Gm13548 2 52739071 to 52739455 384 - pseudogene predicted gene 13548
Cpgi11649 2 52741662 to 52743042 1380 CpG island CpG island 11649
Tssr24090 2 52742142 to 52742156 14 - TSS region transcription start site region 24090
Tssr24091 2 52742169 to 52742217 48 - TSS region transcription start site region 24091
Tssr24092 2 52742402 to 52742441 39 - TSS region transcription start site region 24092
Cpgi11650 2 52857338 to 52859050 1712 CpG island CpG island 11650
Tssr17730 2 52857744 to 52857798 54 + TSS region transcription start site region 17730
Tssr17731 2 52857801 to 52857826 25 + TSS region transcription start site region 17731
Tssr17732 2 52857828 to 52857837 9 + TSS region transcription start site region 17732
Tssr17733 2 52857844 to 52857851 7 + TSS region transcription start site region 17733
Fmnl2 2 52857860 to 53133804 275944 + protein coding gene formin-like 2
Gm26603 2 52859723 to 52863516 3793 - lincRNA gene predicted gene, 26603
Tssr17734 2 52866642 to 52866645 3 + TSS region transcription start site region 17734
5230400M03Rik 2 52866643 to 52870362 3719 unclassified non-coding RNA gene RIKEN cDNA 5230400M03 gene
Tssr17735 2 52868429 to 52868439 10 + TSS region transcription start site region 17735