Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:49286446-50846469

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77 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mbd5 2 48949490 to 49319690 370200 + protein coding gene methyl-CpG binding domain protein 5
Gm13509 2 49308155 to 49309462 1307 + pseudogene predicted gene 13509
Tssr17668 2 49308945 to 49308977 32 + TSS region transcription start site region 17668
D2Mit72 2 49314559 to 49314700 141 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 72
Gm13508 2 49327377 to 49328151 774 - pseudogene predicted gene 13508
Tssr24007 2 49330484 to 49330487 3 - TSS region transcription start site region 24007
Gm25215 2 49398395 to 49398515 120 - snoRNA gene predicted gene, 25215
Cpgi11637 2 49450803 to 49452843 2040 CpG island CpG island 11637
Epc2 2 49451486 to 49551942 100456 + protein coding gene enhancer of polycomb homolog 2
Tssr17669 2 49451488 to 49451559 71 + TSS region transcription start site region 17669
Tssr17670 2 49451842 to 49451849 7 + TSS region transcription start site region 17670
Tssr24008 2 49452861 to 49452874 13 - TSS region transcription start site region 24008
Tssr17671 2 49465929 to 49465931 2 + TSS region transcription start site region 17671
Tssr17672 2 49516803 to 49516804 1 + TSS region transcription start site region 17672
Tssr17673 2 49523609 to 49523613 4 + TSS region transcription start site region 17673
D2Mit376 2 49526896 to 49526990 94 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 376
Tssr17674 2 49527331 to 49527333 2 + TSS region transcription start site region 17674
Tssr17675 2 49562498 to 49562531 33 + TSS region transcription start site region 17675
Cpgi11638 2 49619094 to 49620147 1053 CpG island CpG island 11638
Tssr17676 2 49619252 to 49619272 20 + TSS region transcription start site region 17676
Tssr17677 2 49619277 to 49619343 66 + TSS region transcription start site region 17677
Kif5c 2 49619314 to 49774778 155464 + protein coding gene kinesin family member 5C
Tssr17678 2 49621871 to 49621874 3 + TSS region transcription start site region 17678
Gm13525 2 49680499 to 49680976 477 + pseudogene predicted gene 13525
Tssr17679 2 49698872 to 49698889 17 + TSS region transcription start site region 17679
Tssr17680 2 49700950 to 49700960 10 + TSS region transcription start site region 17680
Tssr24009 2 49710784 to 49710837 53 - TSS region transcription start site region 24009
Tssr17681 2 49721781 to 49721803 22 + TSS region transcription start site region 17681
Tssr17682 2 49721825 to 49721856 31 + TSS region transcription start site region 17682
Tssr24010 2 49730292 to 49730307 15 - TSS region transcription start site region 24010
Tssr24011 2 49743711 to 49743725 14 - TSS region transcription start site region 24011
Tssr17683 2 49743834 to 49743851 17 + TSS region transcription start site region 17683
Tssr17684 2 49744497 to 49744566 69 + TSS region transcription start site region 17684
Tssr17685 2 49744571 to 49744588 17 + TSS region transcription start site region 17685
Gm46738 2 49744753 to 49746875 2122 - lncRNA gene predicted gene, 46738
Cpgi11639 2 49787285 to 49788347 1062 CpG island CpG island 11639
Tssr490 2 49787666 to 49787675 9 + TSS region transcription start site region 490
Tssr17686 2 49787675 to 49787695 20 + TSS region transcription start site region 17686
Lypd6b 2 49787688 to 49948849 161161 + protein coding gene LY6/PLAUR domain containing 6B
Tssr17687 2 49787711 to 49787725 14 + TSS region transcription start site region 17687
Tssr17688 2 49795663 to 49795688 25 + TSS region transcription start site region 17688
Gm13480 2 49805976 to 49812948 6972 - lincRNA gene predicted gene 13480
Tssr17689 2 49811687 to 49811701 14 + TSS region transcription start site region 17689
Tssr17690 2 49846317 to 49846356 39 + TSS region transcription start site region 17690
Tssr17691 2 49890357 to 49890361 4 + TSS region transcription start site region 17691
Gm25223 2 49906771 to 49906880 109 - unclassified non-coding RNA gene predicted gene, 25223
D2Mit373 2 49933014 to 49933136 122 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 373
Cpgi11640 2 50065927 to 50067081 1154 CpG island CpG island 11640
Lypd6 2 50066429 to 50193569 127140 + protein coding gene LY6/PLAUR domain containing 6
Tssr17692 2 50066446 to 50066469 23 + TSS region transcription start site region 17692
Tssr17693 2 50066487 to 50066492 5 + TSS region transcription start site region 17693
Tssr491 2 50066521 to 50066528 7 + TSS region transcription start site region 491
Tssr17694 2 50235919 to 50235920 1 + TSS region transcription start site region 17694
D2Mit155 2 50257282 to 50257400 118 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 155
Mmadhc 2 50279881 to 50296801 16920 - protein coding gene methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria
Cpgi11641 2 50296342 to 50296954 612 CpG island CpG island 11641
Tssr24012 2 50296680 to 50296736 56 - TSS region transcription start site region 24012
Gm13483 2 50296810 to 50433967 137157 + lincRNA gene predicted gene 13483
Tssr17695 2 50296894 to 50296910 16 + TSS region transcription start site region 17695
Tssr17696 2 50297033 to 50297036 3 + TSS region transcription start site region 17696
Tssr24013 2 50297151 to 50297158 7 - TSS region transcription start site region 24013
Tssr24014 2 50297163 to 50297197 34 - TSS region transcription start site region 24014
Tssr24015 2 50297198 to 50297228 30 - TSS region transcription start site region 24015
Gm46739 2 50300377 to 50312240 11863 + lncRNA gene predicted gene, 46739
Tssr17697 2 50303275 to 50303292 17 + TSS region transcription start site region 17697
Tssr17698 2 50335614 to 50335618 4 + TSS region transcription start site region 17698
Gm48908 2 50380400 to 50412610 32210 + lincRNA gene predicted gene 48908
Tssr17699 2 50394925 to 50394933 8 + TSS region transcription start site region 17699
Gm13486 2 50409332 to 50409613 281 + pseudogene predicted gene 13486
D2Mit523 2 50415998 to 50416103 105 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology 523
Gm13488 2 50521682 to 50521860 178 - pseudogene predicted gene 13488
Gm13487 2 50522124 to 50522987 863 - pseudogene predicted gene 13487
Tssr24016 2 50523028 to 50523038 10 - TSS region transcription start site region 24016
Gm13485 2 50547914 to 50552258 4344 + lincRNA gene predicted gene 13485
Gm46784 2 50566442 to 50582107 15665 + lncRNA gene predicted gene, 46784
Gm13484 2 50657656 to 50658067 411 - pseudogene predicted gene 13484
Gm32232 2 50755929 to 50814503 58574 + lncRNA gene predicted gene, 32232