Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:48836987-53627810

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321 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Acvr2a 2 48814109 to 48903264 89155 + protein coding gene activin receptor IIA
D2Mit240 2 48846927 to 48847046 119 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 240
Orc4 2 48902824 to 48950277 47453 - protein coding gene origin recognition complex, subunit 4
Tssr24001 2 48911924 to 48911940 16 - TSS region transcription start site region 24001
Tssr24002 2 48912263 to 48912277 14 - TSS region transcription start site region 24002
Tssr24003 2 48935258 to 48935269 11 - TSS region transcription start site region 24003
Tssr24004 2 48946315 to 48946325 10 - TSS region transcription start site region 24004
Cpgi11636 2 48948838 to 48949564 726 CpG island CpG island 11636
Tssr24005 2 48949206 to 48949256 50 - TSS region transcription start site region 24005
Tssr24006 2 48949264 to 48949275 11 - TSS region transcription start site region 24006
Mbd5 2 48949490 to 49319690 370200 + protein coding gene methyl-CpG binding domain protein 5
Tssr17658 2 48949495 to 48949522 27 + TSS region transcription start site region 17658
Tssr17659 2 48949524 to 48949543 19 + TSS region transcription start site region 17659
Tssr17660 2 48949545 to 48949556 11 + TSS region transcription start site region 17660
Tssr17661 2 48949562 to 48949617 55 + TSS region transcription start site region 17661
Tssr17662 2 48950113 to 48950128 15 + TSS region transcription start site region 17662
Tssr17663 2 48974417 to 48974422 5 + TSS region transcription start site region 17663
Tssr17664 2 48989024 to 48989026 2 + TSS region transcription start site region 17664
D2Mit374 2 49115509 to 49115629 120 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 374
Tssr17665 2 49132492 to 49132510 18 + TSS region transcription start site region 17665
Gm13510 2 49185018 to 49185446 428 + pseudogene predicted gene 13510
Tssr17666 2 49224198 to 49224200 2 + TSS region transcription start site region 17666
Tssr17667 2 49230564 to 49230565 1 + TSS region transcription start site region 17667
Gm13509 2 49308155 to 49309462 1307 + pseudogene predicted gene 13509
Tssr17668 2 49308945 to 49308977 32 + TSS region transcription start site region 17668
D2Mit72 2 49314559 to 49314700 141 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 72
Gm13508 2 49327377 to 49328151 774 - pseudogene predicted gene 13508
Tssr24007 2 49330484 to 49330487 3 - TSS region transcription start site region 24007
Gm25215 2 49398395 to 49398515 120 - snoRNA gene predicted gene, 25215
Cpgi11637 2 49450803 to 49452843 2040 CpG island CpG island 11637
Epc2 2 49451486 to 49551942 100456 + protein coding gene enhancer of polycomb homolog 2
Tssr17669 2 49451488 to 49451559 71 + TSS region transcription start site region 17669
Tssr17670 2 49451842 to 49451849 7 + TSS region transcription start site region 17670
Tssr24008 2 49452861 to 49452874 13 - TSS region transcription start site region 24008
Tssr17671 2 49465929 to 49465931 2 + TSS region transcription start site region 17671
Tssr17672 2 49516803 to 49516804 1 + TSS region transcription start site region 17672
Tssr17673 2 49523609 to 49523613 4 + TSS region transcription start site region 17673
D2Mit376 2 49526896 to 49526990 94 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 376
Tssr17674 2 49527331 to 49527333 2 + TSS region transcription start site region 17674
Tssr17675 2 49562498 to 49562531 33 + TSS region transcription start site region 17675
Cpgi11638 2 49619094 to 49620147 1053 CpG island CpG island 11638
Tssr17676 2 49619252 to 49619272 20 + TSS region transcription start site region 17676
Tssr17677 2 49619277 to 49619343 66 + TSS region transcription start site region 17677
Kif5c 2 49619314 to 49774778 155464 + protein coding gene kinesin family member 5C
Tssr17678 2 49621871 to 49621874 3 + TSS region transcription start site region 17678
Gm13525 2 49680499 to 49680976 477 + pseudogene predicted gene 13525
Tssr17679 2 49698872 to 49698889 17 + TSS region transcription start site region 17679
Tssr17680 2 49700950 to 49700960 10 + TSS region transcription start site region 17680
Tssr24009 2 49710784 to 49710837 53 - TSS region transcription start site region 24009
Tssr17681 2 49721781 to 49721803 22 + TSS region transcription start site region 17681
Tssr17682 2 49721825 to 49721856 31 + TSS region transcription start site region 17682
Tssr24010 2 49730292 to 49730307 15 - TSS region transcription start site region 24010
Tssr24011 2 49743711 to 49743725 14 - TSS region transcription start site region 24011
Tssr17683 2 49743834 to 49743851 17 + TSS region transcription start site region 17683
Tssr17684 2 49744497 to 49744566 69 + TSS region transcription start site region 17684
Tssr17685 2 49744571 to 49744588 17 + TSS region transcription start site region 17685
Gm46738 2 49744753 to 49746875 2122 - lncRNA gene predicted gene, 46738
Cpgi11639 2 49787285 to 49788347 1062 CpG island CpG island 11639
Tssr490 2 49787666 to 49787675 9 + TSS region transcription start site region 490
Tssr17686 2 49787675 to 49787695 20 + TSS region transcription start site region 17686
Lypd6b 2 49787688 to 49948849 161161 + protein coding gene LY6/PLAUR domain containing 6B
Tssr17687 2 49787711 to 49787725 14 + TSS region transcription start site region 17687
Tssr17688 2 49795663 to 49795688 25 + TSS region transcription start site region 17688
Gm13480 2 49805976 to 49812948 6972 - lincRNA gene predicted gene 13480
Tssr17689 2 49811687 to 49811701 14 + TSS region transcription start site region 17689
Tssr17690 2 49846317 to 49846356 39 + TSS region transcription start site region 17690
Tssr17691 2 49890357 to 49890361 4 + TSS region transcription start site region 17691
Gm25223 2 49906771 to 49906880 109 - unclassified non-coding RNA gene predicted gene, 25223
D2Mit373 2 49933014 to 49933136 122 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 373
Cpgi11640 2 50065927 to 50067081 1154 CpG island CpG island 11640
Lypd6 2 50066429 to 50193569 127140 + protein coding gene LY6/PLAUR domain containing 6
Tssr17692 2 50066446 to 50066469 23 + TSS region transcription start site region 17692
Tssr17693 2 50066487 to 50066492 5 + TSS region transcription start site region 17693
Tssr491 2 50066521 to 50066528 7 + TSS region transcription start site region 491
Tssr17694 2 50235919 to 50235920 1 + TSS region transcription start site region 17694
D2Mit155 2 50257282 to 50257400 118 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 155
Mmadhc 2 50279881 to 50296801 16920 - protein coding gene methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria
Cpgi11641 2 50296342 to 50296954 612 CpG island CpG island 11641
Tssr24012 2 50296680 to 50296736 56 - TSS region transcription start site region 24012
Gm13483 2 50296810 to 50433967 137157 + lincRNA gene predicted gene 13483
Tssr17695 2 50296894 to 50296910 16 + TSS region transcription start site region 17695
Tssr17696 2 50297033 to 50297036 3 + TSS region transcription start site region 17696
Tssr24013 2 50297151 to 50297158 7 - TSS region transcription start site region 24013
Tssr24014 2 50297163 to 50297197 34 - TSS region transcription start site region 24014
Tssr24015 2 50297198 to 50297228 30 - TSS region transcription start site region 24015
Gm46739 2 50300377 to 50312240 11863 + lncRNA gene predicted gene, 46739
Tssr17697 2 50303275 to 50303292 17 + TSS region transcription start site region 17697
Tssr17698 2 50335614 to 50335618 4 + TSS region transcription start site region 17698
Gm48908 2 50380400 to 50412610 32210 + lincRNA gene predicted gene 48908
Tssr17699 2 50394925 to 50394933 8 + TSS region transcription start site region 17699
Gm13486 2 50409332 to 50409613 281 + pseudogene predicted gene 13486
D2Mit523 2 50415998 to 50416103 105 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology 523
Gm13488 2 50521682 to 50521860 178 - pseudogene predicted gene 13488
Gm13487 2 50522124 to 50522987 863 - pseudogene predicted gene 13487
Tssr24016 2 50523028 to 50523038 10 - TSS region transcription start site region 24016
Gm13485 2 50547914 to 50552258 4344 + lincRNA gene predicted gene 13485
Gm46784 2 50566442 to 50582107 15665 + lncRNA gene predicted gene, 46784
Gm13484 2 50657656 to 50658067 411 - pseudogene predicted gene 13484
Gm32232 2 50755929 to 50814503 58574 + lncRNA gene predicted gene, 32232
D2Mit458 2 50854155 to 50854275 120 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology 458
Gm39811 2 50894332 to 50922621 28289 - lncRNA gene predicted gene, 39811
Tssr17700 2 50909581 to 50909584 3 + TSS region transcription start site region 17700
Gm13498 2 50909684 to 50911846 2162 + pseudogene predicted gene 13498
Tssr17701 2 50910183 to 50910188 5 + TSS region transcription start site region 17701
Gm32360 2 51072306 to 51088366 16060 - lncRNA gene predicted gene, 32360
Gm39812 2 51083301 to 51105412 22111 + lncRNA gene predicted gene, 39812
Rnd3 2 51130439 to 51149111 18672 - protein coding gene Rho family GTPase 3
Tssr24017 2 51130860 to 51130863 3 - TSS region transcription start site region 24017
Tssr24018 2 51139943 to 51139948 5 - TSS region transcription start site region 24018
Cpgi11642 2 51147032 to 51149350 2318 CpG island CpG island 11642
Tssr24019 2 51149100 to 51149115 15 - TSS region transcription start site region 24019
Gm28639 2 51219382 to 51219862 480 + lincRNA gene predicted gene 28639
Gm13500 2 51231987 to 51232810 823 + pseudogene predicted gene 13500
Gm13497 2 51241831 to 51295945 54114 + lincRNA gene predicted gene 13497
Gm13499 2 51363572 to 51365499 1927 - lincRNA gene predicted gene 13499
1700057H21Rik 2 51421050 to 51437900 16850 - lincRNA gene RIKEN cDNA 1700057H21 gene
Tssr24020 2 51437877 to 51437913 36 - TSS region transcription start site region 24020
Gm32434 2 51438017 to 51447718 9701 + lncRNA gene predicted gene, 32434
Tssr24021 2 51447705 to 51447752 47 - TSS region transcription start site region 24021
Gm23505 2 51493653 to 51493782 129 - snoRNA gene predicted gene, 23505
Tssr492 2 51528878 to 51528880 2 + TSS region transcription start site region 492
Gm13494 2 51544977 to 51546071 1094 + pseudogene predicted gene 13494
Gm13491 2 51604114 to 51604348 234 - pseudogene predicted gene 13491
Tas2r134 2 51627511 to 51628407 896 + protein coding gene taste receptor, type 2, member 134
Gm13490 2 51656966 to 51732009 75043 - lincRNA gene predicted gene 13490
Tssr24022 2 51678186 to 51678190 4 - TSS region transcription start site region 24022
D2Mit243 2 51694208 to 51694329 121 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 243
D2Mit243.1 2 51694274 to 51694473 199 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 243.1
Gm13492 2 51817905 to 51818569 664 - pseudogene predicted gene 13492
Gm13493 2 51871126 to 51871618 492 - pseudogene predicted gene 13493
Rbm43 2 51924448 to 51935163 10715 - protein coding gene RNA binding motif protein 43
Tssr24023 2 51933304 to 51933320 16 - TSS region transcription start site region 24023
Tssr24024 2 51933333 to 51933340 7 - TSS region transcription start site region 24024
Cpgi11643 2 51934605 to 51935285 680 CpG island CpG island 11643
Tssr24025 2 51934690 to 51934710 20 - TSS region transcription start site region 24025
Tssr24026 2 51934943 to 51935015 72 - TSS region transcription start site region 24026
Gm13495 2 51938133 to 51938669 536 - pseudogene predicted gene 13495
Gm20588 2 51939416 to 51941011 1595 + pseudogene predicted gene, 20588
Nmi 2 51948487 to 51973494 25007 - protein coding gene N-myc (and STAT) interactor
Cpgi11644 2 51952392 to 51952588 196 CpG island CpG island 11644
Tssr17702 2 51972338 to 51972384 46 + TSS region transcription start site region 17702
Cpgi11645 2 51972676 to 51973129 453 CpG island CpG island 11645
Tssr24027 2 51972929 to 51972981 52 - TSS region transcription start site region 24027
Tssr24028 2 51972990 to 51973022 32 - TSS region transcription start site region 24028
Tssr24029 2 51973082 to 51973123 41 - TSS region transcription start site region 24029
Tssr24030 2 51973190 to 51973216 26 - TSS region transcription start site region 24030
Tssr24031 2 51973219 to 51973234 15 - TSS region transcription start site region 24031
Tssr17703 2 52037985 to 52038001 16 + TSS region transcription start site region 17703
Tssr17704 2 52038005 to 52038020 15 + TSS region transcription start site region 17704
Tssr17705 2 52038092 to 52038111 19 + TSS region transcription start site region 17705
Tnfaip6 2 52038113 to 52056681 18568 + protein coding gene tumor necrosis factor alpha induced protein 6
Tssr17706 2 52038142 to 52038155 13 + TSS region transcription start site region 17706
Tssr17707 2 52071509 to 52071531 22 + TSS region transcription start site region 17707
Tssr17708 2 52071543 to 52071552 9 + TSS region transcription start site region 17708
Tssr17709 2 52071554 to 52071566 12 + TSS region transcription start site region 17709
Tssr17710 2 52071571 to 52071597 26 + TSS region transcription start site region 17710
Tssr17711 2 52071605 to 52071617 12 + TSS region transcription start site region 17711
Tssr17712 2 52071877 to 52071883 6 + TSS region transcription start site region 17712
Tssr17713 2 52072317 to 52072328 11 + TSS region transcription start site region 17713
Tssr17714 2 52072333 to 52072346 13 + TSS region transcription start site region 17714
Cpgi11646 2 52072365 to 52073647 1282 CpG island CpG island 11646
Tssr17715 2 52072804 to 52072814 10 + TSS region transcription start site region 17715
Tssr17716 2 52072823 to 52072854 31 + TSS region transcription start site region 17716
Rif1 2 52072832 to 52122383 49551 + protein coding gene replication timing regulatory factor 1
Tssr17717 2 52072861 to 52072878 17 + TSS region transcription start site region 17717
Tssr17718 2 52072895 to 52072906 11 + TSS region transcription start site region 17718
Tssr17719 2 52073099 to 52073141 42 + TSS region transcription start site region 17719
Tssr17720 2 52110187 to 52110201 14 + TSS region transcription start site region 17720
Tssr17721 2 52120981 to 52120988 7 + TSS region transcription start site region 17721
Tssr17722 2 52121463 to 52121477 14 + TSS region transcription start site region 17722
Neb 2 52136640 to 52338798 202158 - protein coding gene nebulin
Tssr24032 2 52151430 to 52151435 5 - TSS region transcription start site region 24032
Tssr17723 2 52163725 to 52163728 3 + TSS region transcription start site region 17723
Tssr24033 2 52169120 to 52169141 21 - TSS region transcription start site region 24033
Tssr24034 2 52169921 to 52169950 29 - TSS region transcription start site region 24034
Tssr24035 2 52170508 to 52170519 11 - TSS region transcription start site region 24035
Tssr24036 2 52175133 to 52175147 14 - TSS region transcription start site region 24036
Tssr24037 2 52186081 to 52186092 11 - TSS region transcription start site region 24037
Tssr24038 2 52188737 to 52188761 24 - TSS region transcription start site region 24038
Tssr24039 2 52189654 to 52189672 18 - TSS region transcription start site region 24039
Tssr24040 2 52194433 to 52194445 12 - TSS region transcription start site region 24040
Tssr24041 2 52201461 to 52201474 13 - TSS region transcription start site region 24041
Tssr24042 2 52205685 to 52205696 11 - TSS region transcription start site region 24042
Tssr24043 2 52206218 to 52206226 8 - TSS region transcription start site region 24043
Tssr24044 2 52206949 to 52206969 20 - TSS region transcription start site region 24044
Tssr24045 2 52212766 to 52212776 10 - TSS region transcription start site region 24045
Tssr24046 2 52232966 to 52232995 29 - TSS region transcription start site region 24046
Tssr24047 2 52235592 to 52235603 11 - TSS region transcription start site region 24047
Tssr24048 2 52263608 to 52263619 11 - TSS region transcription start site region 24048
Tssr24049 2 52263659 to 52263668 9 - TSS region transcription start site region 24049
Tssr24050 2 52271129 to 52271143 14 - TSS region transcription start site region 24050
Tssr24051 2 52272963 to 52272972 9 - TSS region transcription start site region 24051
Tssr24052 2 52277512 to 52277531 19 - TSS region transcription start site region 24052
Gm22095 2 52283077 to 52283226 149 + miRNA gene predicted gene, 22095
Tssr24053 2 52286108 to 52286125 17 - TSS region transcription start site region 24053
Tssr24054 2 52289690 to 52289708 18 - TSS region transcription start site region 24054
4930573O16Rik 2 52291002 to 52315240 24238 + lncRNA gene RIKEN cDNA 4930573O16 gene
Tssr24055 2 52291158 to 52291169 11 - TSS region transcription start site region 24055
Tssr24056 2 52292863 to 52292885 22 - TSS region transcription start site region 24056
Tssr24057 2 52307712 to 52307723 11 - TSS region transcription start site region 24057