Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:4853977-8234006

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297 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi11161 2 4881169 to 4882802 1633 CpG island CpG island 11161
Tssr15977 2 4881487 to 4881571 84 + TSS region transcription start site region 15977
Sephs1 2 4881564 to 4910557 28993 + protein coding gene selenophosphate synthetase 1
Tssr15978 2 4881756 to 4881772 16 + TSS region transcription start site region 15978
Tssr15979 2 4881798 to 4881836 38 + TSS region transcription start site region 15979
Tssr15980 2 4881849 to 4881860 11 + TSS region transcription start site region 15980
Tssr15981 2 4882204 to 4882252 48 + TSS region transcription start site region 15981
Tssr15982 2 4882271 to 4882293 22 + TSS region transcription start site region 15982
Tssr15983 2 4895874 to 4895880 6 + TSS region transcription start site region 15983
Gm46728 2 4910159 to 4916456 6297 - lncRNA gene predicted gene, 46728
Cpgi11162 2 4918825 to 4919282 457 CpG island CpG island 11162
Tssr15984 2 4918891 to 4918905 14 + TSS region transcription start site region 15984
Tssr15985 2 4919004 to 4919038 34 + TSS region transcription start site region 15985
Phyh 2 4919019 to 4938730 19711 + protein coding gene phytanoyl-CoA hydroxylase
Tssr15986 2 4919041 to 4919062 21 + TSS region transcription start site region 15986
Tssr15987 2 4922610 to 4922631 21 + TSS region transcription start site region 15987
Tssr15988 2 4922820 to 4922856 36 + TSS region transcription start site region 15988
Tssr15989 2 4925591 to 4925624 33 + TSS region transcription start site region 15989
Tssr15990 2 4927374 to 4927389 15 + TSS region transcription start site region 15990
Tssr15991 2 4927484 to 4927497 13 + TSS region transcription start site region 15991
Tssr15992 2 4928658 to 4928667 9 + TSS region transcription start site region 15992
Tssr15993 2 4930736 to 4930766 30 + TSS region transcription start site region 15993
Tssr15994 2 4935136 to 4935138 2 + TSS region transcription start site region 15994
Tssr15995 2 4935990 to 4936026 36 + TSS region transcription start site region 15995
Tssr22388 2 4936034 to 4936051 17 - TSS region transcription start site region 22388
Tssr15996 2 4936039 to 4936056 17 + TSS region transcription start site region 15996
Tssr22389 2 4938382 to 4938406 24 - TSS region transcription start site region 22389
Gm13194 2 4942174 to 4942484 310 + pseudogene predicted gene 13194
Gm13193 2 4956069 to 4956293 224 - pseudogene predicted gene 13193
Tssr22390 2 4956352 to 4956361 9 - TSS region transcription start site region 22390
Gm13192 2 4959545 to 4959752 207 - pseudogene predicted gene 13192
Tssr22391 2 4959774 to 4959778 4 - TSS region transcription start site region 22391
Tssr15997 2 4976113 to 4976164 51 + TSS region transcription start site region 15997
Ucma 2 4976122 to 4985748 9626 + protein coding gene upper zone of growth plate and cartilage matrix associated
Tssr15998 2 4976176 to 4976185 9 + TSS region transcription start site region 15998
D2Mit354 2 4984708 to 4984831 123 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 354
Heal15 2 4984708 to 4984831 123 QTL wound healing/regeneration 15
Mcm10 2 4989714 to 5012791 23077 - protein coding gene minichromosome maintenance 10 replication initiation factor
Tssr22392 2 4993261 to 4993300 39 - TSS region transcription start site region 22392
Tssr15999 2 4994469 to 4994474 5 + TSS region transcription start site region 15999
Tssr22393 2 5001567 to 5001584 17 - TSS region transcription start site region 22393
Cpgi11163 2 5012506 to 5012898 392 CpG island CpG island 11163
Tssr22394 2 5012716 to 5012766 50 - TSS region transcription start site region 22394
A930010G16Rik 2 5018445 to 5019805 1360 unclassified gene RIKEN cDNA A930010G16 gene
Optn 2 5020642 to 5064051 43409 - protein coding gene optineurin
D2Bwg1072e 2 5036296 to 5036513 217 DNA segment DNA segment, Chr 2, Brigham & Women's Genetics 1072 expressed
4930551O13Rik 2 5037280 to 5041133 3853 + antisense lncRNA gene RIKEN cDNA 4930551O13 gene
Tssr22395 2 5062944 to 5062954 10 - TSS region transcription start site region 22395
Cpgi11164 2 5063549 to 5064446 897 CpG island CpG island 11164
Tssr392 2 5063618 to 5063626 8 + TSS region transcription start site region 392
Tssr22396 2 5063932 to 5063971 39 - TSS region transcription start site region 22396
Tssr22397 2 5063975 to 5063986 11 - TSS region transcription start site region 22397
Tssr22398 2 5063996 to 5064048 52 - TSS region transcription start site region 22398
Tssr22399 2 5064052 to 5064075 23 - TSS region transcription start site region 22399
Tssr22400 2 5080567 to 5080573 6 - TSS region transcription start site region 22400
Tssr22401 2 5083816 to 5083827 11 - TSS region transcription start site region 22401
Tssr22402 2 5083839 to 5083852 13 - TSS region transcription start site region 22402
Tssr22403 2 5083863 to 5083872 9 - TSS region transcription start site region 22403
Cpgi11165 2 5098066 to 5098268 202 CpG island CpG island 11165
Gm39755 2 5101028 to 5103438 2410 - lncRNA gene predicted gene, 39755
Cpgi11166 2 5137393 to 5138395 1002 CpG island CpG island 11166
Tssr393 2 5137735 to 5137740 5 + TSS region transcription start site region 393
Gm26776 2 5137749 to 5230864 93115 - lincRNA gene predicted gene, 26776
Tssr16000 2 5137756 to 5137772 16 + TSS region transcription start site region 16000
Ccdc3 2 5137776 to 5230878 93102 + protein coding gene coiled-coil domain containing 3
Tssr16001 2 5137850 to 5137868 18 + TSS region transcription start site region 16001
Gm13198 2 5156555 to 5157107 552 + pseudogene predicted gene 13198
Gm46729 2 5215405 to 5220854 5449 + lncRNA gene predicted gene, 46729
Tssr16002 2 5230053 to 5230062 9 + TSS region transcription start site region 16002
Gm23118 2 5259929 to 5260115 186 - snRNA gene predicted gene, 23118
Gm13197 2 5283650 to 5283874 224 + pseudogene predicted gene 13197
Camk1d 2 5293457 to 5714515 421058 - protein coding gene calcium/calmodulin-dependent protein kinase ID
Tssr22404 2 5296201 to 5296214 13 - TSS region transcription start site region 22404
Tssr22405 2 5297326 to 5297342 16 - TSS region transcription start site region 22405
Tssr22406 2 5306489 to 5306493 4 - TSS region transcription start site region 22406
Gm36906 2 5313211 to 5317500 4289 + lncRNA gene predicted gene, 36906
Tssr22407 2 5339868 to 5339873 5 - TSS region transcription start site region 22407
Tssr22408 2 5379336 to 5379360 24 - TSS region transcription start site region 22408
Tssr394 2 5394172 to 5394173 1 + TSS region transcription start site region 394
Tssr22409 2 5410936 to 5410941 5 - TSS region transcription start site region 22409
Tssr16003 2 5413246 to 5413248 2 + TSS region transcription start site region 16003
Gm36853 2 5488130 to 5496496 8366 + lncRNA gene predicted gene, 36853
Tssr22410 2 5538681 to 5538716 35 - TSS region transcription start site region 22410
Tssr22411 2 5538731 to 5538744 13 - TSS region transcription start site region 22411
Tssr16004 2 5603551 to 5603565 14 + TSS region transcription start site region 16004
Gm13216 2 5603571 to 5604161 590 + pseudogene predicted gene 13216
Tssr22412 2 5657395 to 5657407 12 - TSS region transcription start site region 22412
Tssr22413 2 5670286 to 5670307 21 - TSS region transcription start site region 22413
Tssr22414 2 5671515 to 5671520 5 - TSS region transcription start site region 22414
Tssr22415 2 5672967 to 5672969 2 - TSS region transcription start site region 22415
Tssr22416 2 5675991 to 5676025 34 - TSS region transcription start site region 22416
Tssr22417 2 5676062 to 5676065 3 - TSS region transcription start site region 22417
Tssr22418 2 5676955 to 5676969 14 - TSS region transcription start site region 22418
Tssr22419 2 5676983 to 5676993 10 - TSS region transcription start site region 22419
Tssr22420 2 5677533 to 5677545 12 - TSS region transcription start site region 22420
Tssr22421 2 5682032 to 5682037 5 - TSS region transcription start site region 22421
Tssr16005 2 5683715 to 5683718 3 + TSS region transcription start site region 16005
Tssr22422 2 5697881 to 5697899 18 - TSS region transcription start site region 22422
Tssr22423 2 5698012 to 5698020 8 - TSS region transcription start site region 22423
Cpgi11167 2 5713678 to 5715321 1643 CpG island CpG island 11167
Tssr22424 2 5714341 to 5714402 61 - TSS region transcription start site region 22424
Tssr22425 2 5714435 to 5714446 11 - TSS region transcription start site region 22425
Tssr22426 2 5714463 to 5714487 24 - TSS region transcription start site region 22426
Tssr22427 2 5714490 to 5714538 48 - TSS region transcription start site region 22427
Gm29857 2 5727992 to 5746476 18484 + lncRNA gene predicted gene, 29857
Cpgi11168 2 5746381 to 5746612 231 CpG island CpG island 11168
Tssr22428 2 5760700 to 5760713 13 - TSS region transcription start site region 22428
Cdc123 2 5794294 to 5844968 50674 - protein coding gene cell division cycle 123
Gm29984 2 5825418 to 5830815 5397 + lncRNA gene predicted gene, 29984
Cpgi11169 2 5844620 to 5845694 1074 CpG island CpG island 11169
Tssr22429 2 5844917 to 5844985 68 - TSS region transcription start site region 22429
Tssr16006 2 5845017 to 5845062 45 + TSS region transcription start site region 16006
Nudt5 2 5845034 to 5870820 25786 + protein coding gene nudix (nucleoside diphosphate linked moiety X)-type motif 5
Tssr16007 2 5845243 to 5845311 68 + TSS region transcription start site region 16007
Tssr16008 2 5848120 to 5848134 14 + TSS region transcription start site region 16008
Tssr16009 2 5852845 to 5852857 12 + TSS region transcription start site region 16009
Gm13199 2 5862080 to 5862934 854 - protein coding gene predicted gene 13199
Sec61a2 2 5870987 to 5895432 24445 - protein coding gene Sec61, alpha subunit 2 (S. cerevisiae)
B930028L11Rik 2 5887225 to 5889499 2274 unclassified gene RIKEN cDNA B930028L11 gene
Cpgi11170 2 5894950 to 5895579 629 CpG island CpG island 11170
Tssr22430 2 5895325 to 5895408 83 - TSS region transcription start site region 22430
Tssr16010 2 5895456 to 5895475 19 + TSS region transcription start site region 16010
Tssr16011 2 5895489 to 5895513 24 + TSS region transcription start site region 16011
Gm13267 2 5895510 to 5900131 4621 + antisense lncRNA gene predicted gene 13267
Dhtkd1 2 5896115 to 5942792 46677 - protein coding gene dehydrogenase E1 and transketolase domain containing 1
Gm10859 2 5911952 to 5914498 2546 unclassified gene predicted gene 10859
Tssr22431 2 5925268 to 5925272 4 - TSS region transcription start site region 22431
Tssr22432 2 5934533 to 5934535 2 - TSS region transcription start site region 22432
Cpgi11171 2 5942388 to 5942796 408 CpG island CpG island 11171
Tssr22433 2 5942719 to 5942729 10 - TSS region transcription start site region 22433
Tssr22434 2 5942740 to 5942804 64 - TSS region transcription start site region 22434
Cpgi11172 2 5950854 to 5951025 171 CpG island CpG island 11172
Cpgi11173 2 5951054 to 5952232 1178 CpG island CpG island 11173
Tssr16012 2 5951440 to 5951468 28 + TSS region transcription start site region 16012
Upf2 2 5951469 to 6056703 105234 + protein coding gene UPF2 regulator of nonsense transcripts homolog (yeast)
Tssr16013 2 5951480 to 5951536 56 + TSS region transcription start site region 16013
Tssr16014 2 5951568 to 5951589 21 + TSS region transcription start site region 16014
Tssr16015 2 5954581 to 5954621 40 + TSS region transcription start site region 16015
Tssr16016 2 5957460 to 5957473 13 + TSS region transcription start site region 16016
Tssr16017 2 5957597 to 5957620 23 + TSS region transcription start site region 16017
Gm30136 2 6079581 to 6083053 3472 + lncRNA gene predicted gene, 30136
Tssr22435 2 6081158 to 6081161 3 - TSS region transcription start site region 22435
Proser2 2 6098493 to 6130293 31800 - protein coding gene proline and serine rich 2
Cpgi11174 2 6100159 to 6101214 1055 CpG island CpG island 11174
Cpgi11175 2 6129545 to 6130547 1002 CpG island CpG island 11175
Tssr22436 2 6130035 to 6130055 20 - TSS region transcription start site region 22436
Tssr22437 2 6130078 to 6130089 11 - TSS region transcription start site region 22437
Tssr22438 2 6130097 to 6130106 9 - TSS region transcription start site region 22438
Tssr22439 2 6130117 to 6130167 50 - TSS region transcription start site region 22439
Gm13384 2 6132211 to 6133956 1745 - pseudogene predicted gene 13384
Gm10857 2 6132869 to 6140568 7699 + lincRNA gene predicted gene 10857
Echdc3 2 6188465 to 6212994 24529 - protein coding gene enoyl Coenzyme A hydratase domain containing 3
A230108P19Rik 2 6193251 to 6321611 128360 + antisense lncRNA gene RIKEN cDNA A230108P19 gene
Gm30185 2 6208596 to 6211567 2971 - lncRNA gene predicted gene, 30185
Tssr16018 2 6209863 to 6209866 3 + TSS region transcription start site region 16018
Tssr22440 2 6212973 to 6212977 4 - TSS region transcription start site region 22440
Tssr22441 2 6212980 to 6213002 22 - TSS region transcription start site region 22441
Tssr22442 2 6213035 to 6213044 9 - TSS region transcription start site region 22442
Gm13383 2 6255946 to 6257266 1320 - lincRNA gene predicted gene 13383
Tssr22443 2 6256284 to 6256288 4 - TSS region transcription start site region 22443
Gm46730 2 6256838 to 6260737 3899 + lncRNA gene predicted gene, 46730
Tssr16019 2 6294343 to 6294349 6 + TSS region transcription start site region 16019
Cpgi11176 2 6321938 to 6323573 1635 CpG island CpG island 11176
1700014B07Rik 2 6322262 to 6323079 817 protein coding gene RIKEN cDNA 1700014B07 gene
Tssr16020 2 6322621 to 6322647 26 + TSS region transcription start site region 16020
Usp6nl 2 6322667 to 6446390 123723 + protein coding gene USP6 N-terminal like
Tssr16021 2 6322751 to 6322783 32 + TSS region transcription start site region 16021
Tssr16022 2 6322786 to 6322860 74 + TSS region transcription start site region 16022
Tssr22444 2 6323074 to 6323096 22 - TSS region transcription start site region 22444
Tssr22445 2 6323155 to 6323171 16 - TSS region transcription start site region 22445
Tssr16023 2 6341020 to 6341031 11 + TSS region transcription start site region 16023
Tssr16024 2 6342664 to 6342668 4 + TSS region transcription start site region 16024
Cpgi11177 2 6352816 to 6353060 244 CpG island CpG island 11177
Tssr16025 2 6386283 to 6386306 23 + TSS region transcription start site region 16025
Gm13388 2 6431786 to 6436033 4247 - antisense lncRNA gene predicted gene 13388
Tssr16026 2 6471991 to 6472004 13 + TSS region transcription start site region 16026
Gm13391 2 6472000 to 6478619 6619 + lincRNA gene predicted gene 13391
Tssr16027 2 6472027 to 6472052 25 + TSS region transcription start site region 16027
Tssr16028 2 6472067 to 6472076 9 + TSS region transcription start site region 16028
Cpgi11178 2 6478382 to 6478534 152 CpG island CpG island 11178
Gm38386 2 6479690 to 6483110 3420 + unclassified gene predicted gene, 38386
Cpgi11179 2 6523746 to 6524208 462 CpG island CpG island 11179
Celf2 2 6539694 to 7396228 856534 - protein coding gene CUGBP, Elav-like family member 2
Tssr22446 2 6542728 to 6542745 17 - TSS region transcription start site region 22446
Tssr22447 2 6543977 to 6544006 29 - TSS region transcription start site region 22447
Tssr22448 2 6546066 to 6546077 11 - TSS region transcription start site region 22448
Tssr22449 2 6549956 to 6549967 11 - TSS region transcription start site region 22449
C230011H18Rik 2 6566135 to 6569262 3127 unclassified gene RIKEN cDNA C230011H18 gene
Tssr395 2 6570522 to 6570524 2 + TSS region transcription start site region 395
Tssr16029 2 6582915 to 6582950 35 + TSS region transcription start site region 16029
Tssr22450 2 6583716 to 6583725 9 - TSS region transcription start site region 22450
Tssr22451 2 6592801 to 6592831 30 - TSS region transcription start site region 22451
Tssr22452 2 6627934 to 6627939 5 - TSS region transcription start site region 22452
Tssr22453 2 6638136 to 6638140 4 - TSS region transcription start site region 22453
Tssr22454 2 6650947 to 6650955 8 - TSS region transcription start site region 22454
Tssr16030 2 6707549 to 6707563 14 + TSS region transcription start site region 16030
Tssr22455 2 6720824 to 6720840 16 - TSS region transcription start site region 22455
Tssr22456 2 6721027 to 6721074 47 - TSS region transcription start site region 22456
Tssr16031 2 6721167 to 6721181 14 + TSS region transcription start site region 16031
Tssr22457 2 6721606 to 6721629 23 - TSS region transcription start site region 22457