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Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:47929176-49699219

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67 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D2Mit470 2 47930038 to 47930281 243 DNA segment DNA Segment, Chr 2 Massachusetts Institute of Technology 470
Gm13481 2 48062162 to 48156559 94397 - lincRNA gene predicted gene 13481
Gm13471 2 48140146 to 48140578 432 + pseudogene predicted gene 13471
Gm13482 2 48298908 to 48299161 253 + pseudogene predicted gene 13482
Gm25338 2 48384219 to 48384338 119 - snRNA gene predicted gene, 25338
Gm13472 2 48388037 to 48388350 313 + pseudogene predicted gene 13472
Tssr24000 2 48457257 to 48457269 12 - TSS region transcription start site region 24000
Gm39809 2 48490606 to 48539147 48541 - lncRNA gene predicted gene, 39809
Tssr17651 2 48627462 to 48627470 8 + TSS region transcription start site region 17651
D2Mit298.2 2 48675962 to 48676110 148 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 298.2
Tssr489 2 48691503 to 48691510 7 - TSS region transcription start site region 489
Gm31324 2 48793307 to 48798903 5596 + lncRNA gene predicted gene, 31324
Gm13489 2 48809585 to 48810555 970 - pseudogene predicted gene 13489
Cpgi11635 2 48813389 to 48815052 1663 CpG island CpG island 11635
Tssr17652 2 48813998 to 48814013 15 + TSS region transcription start site region 17652
Tssr17653 2 48814016 to 48814040 24 + TSS region transcription start site region 17653
Acvr2a 2 48814109 to 48903264 89155 + protein coding gene activin receptor IIA
Tssr17654 2 48814124 to 48814173 49 + TSS region transcription start site region 17654
Tssr17655 2 48814176 to 48814219 43 + TSS region transcription start site region 17655
Tssr17656 2 48815343 to 48815352 9 + TSS region transcription start site region 17656
Tssr17657 2 48833305 to 48833312 7 + TSS region transcription start site region 17657
D2Mit240 2 48846927 to 48847046 119 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 240
Orc4 2 48902824 to 48950277 47453 - protein coding gene origin recognition complex, subunit 4
Tssr24001 2 48911924 to 48911940 16 - TSS region transcription start site region 24001
Tssr24002 2 48912263 to 48912277 14 - TSS region transcription start site region 24002
Tssr24003 2 48935258 to 48935269 11 - TSS region transcription start site region 24003
Tssr24004 2 48946315 to 48946325 10 - TSS region transcription start site region 24004
Cpgi11636 2 48948838 to 48949564 726 CpG island CpG island 11636
Tssr24005 2 48949206 to 48949256 50 - TSS region transcription start site region 24005
Tssr24006 2 48949264 to 48949275 11 - TSS region transcription start site region 24006
Mbd5 2 48949490 to 49319690 370200 + protein coding gene methyl-CpG binding domain protein 5
Tssr17658 2 48949495 to 48949522 27 + TSS region transcription start site region 17658
Tssr17659 2 48949524 to 48949543 19 + TSS region transcription start site region 17659
Tssr17660 2 48949545 to 48949556 11 + TSS region transcription start site region 17660
Tssr17661 2 48949562 to 48949617 55 + TSS region transcription start site region 17661
Tssr17662 2 48950113 to 48950128 15 + TSS region transcription start site region 17662
Tssr17663 2 48974417 to 48974422 5 + TSS region transcription start site region 17663
Tssr17664 2 48989024 to 48989026 2 + TSS region transcription start site region 17664
D2Mit374 2 49115509 to 49115629 120 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 374
Tssr17665 2 49132492 to 49132510 18 + TSS region transcription start site region 17665
Gm13510 2 49185018 to 49185446 428 + pseudogene predicted gene 13510
Tssr17666 2 49224198 to 49224200 2 + TSS region transcription start site region 17666
Tssr17667 2 49230564 to 49230565 1 + TSS region transcription start site region 17667
Gm13509 2 49308155 to 49309462 1307 + pseudogene predicted gene 13509
Tssr17668 2 49308945 to 49308977 32 + TSS region transcription start site region 17668
D2Mit72 2 49314559 to 49314700 141 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 72
Gm13508 2 49327377 to 49328151 774 - pseudogene predicted gene 13508
Tssr24007 2 49330484 to 49330487 3 - TSS region transcription start site region 24007
Gm25215 2 49398395 to 49398515 120 - snoRNA gene predicted gene, 25215
Cpgi11637 2 49450803 to 49452843 2040 CpG island CpG island 11637
Epc2 2 49451486 to 49551942 100456 + protein coding gene enhancer of polycomb homolog 2
Tssr17669 2 49451488 to 49451559 71 + TSS region transcription start site region 17669
Tssr17670 2 49451842 to 49451849 7 + TSS region transcription start site region 17670
Tssr24008 2 49452861 to 49452874 13 - TSS region transcription start site region 24008
Tssr17671 2 49465929 to 49465931 2 + TSS region transcription start site region 17671
Tssr17672 2 49516803 to 49516804 1 + TSS region transcription start site region 17672
Tssr17673 2 49523609 to 49523613 4 + TSS region transcription start site region 17673
D2Mit376 2 49526896 to 49526990 94 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 376
Tssr17674 2 49527331 to 49527333 2 + TSS region transcription start site region 17674
Tssr17675 2 49562498 to 49562531 33 + TSS region transcription start site region 17675
Cpgi11638 2 49619094 to 49620147 1053 CpG island CpG island 11638
Tssr17676 2 49619252 to 49619272 20 + TSS region transcription start site region 17676
Tssr17677 2 49619277 to 49619343 66 + TSS region transcription start site region 17677
Kif5c 2 49619314 to 49774778 155464 + protein coding gene kinesin family member 5C
Tssr17678 2 49621871 to 49621874 3 + TSS region transcription start site region 17678
Gm13525 2 49680499 to 49680976 477 + pseudogene predicted gene 13525
Tssr17679 2 49698872 to 49698889 17 + TSS region transcription start site region 17679