Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:45089495-52809522

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391 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Zeb2 2 44983632 to 45117395 133763 - protein coding gene zinc finger E-box binding homeobox 2
Tssr23948 2 45090839 to 45090844 5 - TSS region transcription start site region 23948
Tssr23949 2 45091346 to 45091355 9 - TSS region transcription start site region 23949
Tssr23950 2 45092484 to 45092495 11 - TSS region transcription start site region 23950
Tssr23951 2 45094250 to 45094267 17 - TSS region transcription start site region 23951
Tssr23952 2 45095914 to 45095954 40 - TSS region transcription start site region 23952
Tssr23953 2 45096782 to 45096798 16 - TSS region transcription start site region 23953
Tssr23954 2 45098749 to 45098773 24 - TSS region transcription start site region 23954
Tssr23955 2 45098866 to 45098889 23 - TSS region transcription start site region 23955
Tssr23956 2 45099396 to 45099419 23 - TSS region transcription start site region 23956
Tssr23957 2 45099472 to 45099486 14 - TSS region transcription start site region 23957
Tssr23958 2 45099573 to 45099588 15 - TSS region transcription start site region 23958
Tssr23959 2 45102129 to 45102155 26 - TSS region transcription start site region 23959
Tssr23960 2 45102189 to 45102252 63 - TSS region transcription start site region 23960
Tssr23961 2 45102477 to 45102494 17 - TSS region transcription start site region 23961
Tssr23962 2 45103548 to 45103549 1 - TSS region transcription start site region 23962
Tssr23963 2 45104232 to 45104252 20 - TSS region transcription start site region 23963
Tssr17625 2 45106192 to 45106213 21 + TSS region transcription start site region 17625
Tssr17626 2 45106275 to 45106283 8 + TSS region transcription start site region 17626
Tssr23964 2 45106896 to 45106907 11 - TSS region transcription start site region 23964
Cpgi11631 2 45108695 to 45108866 171 CpG island CpG island 11631
Cpgi11632 2 45109265 to 45110454 1189 CpG island CpG island 11632
Tssr23965 2 45110040 to 45110049 9 - TSS region transcription start site region 23965
Tssr23966 2 45110073 to 45110104 31 - TSS region transcription start site region 23966
Tssr23967 2 45110142 to 45110165 23 - TSS region transcription start site region 23967
Tssr23968 2 45110167 to 45110183 16 - TSS region transcription start site region 23968
Tssr23969 2 45110198 to 45110207 9 - TSS region transcription start site region 23969
Tssr23970 2 45110215 to 45110234 19 - TSS region transcription start site region 23970
Tssr23971 2 45110241 to 45110265 24 - TSS region transcription start site region 23971
Tssr23972 2 45110268 to 45110295 27 - TSS region transcription start site region 23972
Tssr23973 2 45110336 to 45110376 40 - TSS region transcription start site region 23973
Tssr23974 2 45110377 to 45110388 11 - TSS region transcription start site region 23974
Tssr17627 2 45110445 to 45110457 12 + TSS region transcription start site region 17627
Tssr17628 2 45110472 to 45110495 23 + TSS region transcription start site region 17628
Tssr17629 2 45110972 to 45111008 36 + TSS region transcription start site region 17629
Cpgi11633 2 45111106 to 45111258 152 CpG island CpG island 11633
Tssr23975 2 45111129 to 45111136 7 - TSS region transcription start site region 23975
Zeb2os 2 45111138 to 45114087 2949 + antisense lncRNA gene zinc finger E-box binding homeobox 2, opposite strand
Tssr23976 2 45111139 to 45111155 16 - TSS region transcription start site region 23976
Tssr17630 2 45111150 to 45111166 16 + TSS region transcription start site region 17630
Gm27761 2 45111171 to 45111301 130 + unclassified non-coding RNA gene predicted gene, 27761
Tssr17631 2 45111178 to 45111192 14 + TSS region transcription start site region 17631
Tssr17632 2 45111195 to 45111214 19 + TSS region transcription start site region 17632
Tssr23977 2 45111259 to 45111319 60 - TSS region transcription start site region 23977
Tssr23978 2 45111708 to 45111721 13 - TSS region transcription start site region 23978
Tssr23979 2 45111838 to 45111862 24 - TSS region transcription start site region 23979
Tssr23980 2 45112083 to 45112094 11 - TSS region transcription start site region 23980
Tssr23981 2 45112115 to 45112134 19 - TSS region transcription start site region 23981
Tssr17633 2 45112236 to 45112255 19 + TSS region transcription start site region 17633
Tssr17634 2 45112269 to 45112280 11 + TSS region transcription start site region 17634
Tssr17635 2 45112290 to 45112304 14 + TSS region transcription start site region 17635
Tssr23982 2 45112992 to 45113010 18 - TSS region transcription start site region 23982
Tssr23983 2 45113201 to 45113214 13 - TSS region transcription start site region 23983
Tssr23984 2 45113217 to 45113238 21 - TSS region transcription start site region 23984
Tssr23985 2 45113255 to 45113275 20 - TSS region transcription start site region 23985
Gm27404 2 45113313 to 45113415 102 + unclassified non-coding RNA gene predicted gene, 27404
Tssr23986 2 45113900 to 45113927 27 - TSS region transcription start site region 23986
Gm27645 2 45113908 to 45113984 76 + unclassified non-coding RNA gene predicted gene, 27645
Tssr23987 2 45113929 to 45113952 23 - TSS region transcription start site region 23987
Cpgi11634 2 45116674 to 45117557 883 CpG island CpG island 11634
Tssr23988 2 45116964 to 45116998 34 - TSS region transcription start site region 23988
Tssr17636 2 45117231 to 45117284 53 + TSS region transcription start site region 17636
Tssr23989 2 45117301 to 45117345 44 - TSS region transcription start site region 23989
Tssr23990 2 45117349 to 45117375 26 - TSS region transcription start site region 23990
Tssr23991 2 45117400 to 45117411 11 - TSS region transcription start site region 23991
Tssr23992 2 45117426 to 45117516 90 - TSS region transcription start site region 23992
Tssr23993 2 45117523 to 45117539 16 - TSS region transcription start site region 23993
Tssr17637 2 45133475 to 45133480 5 + TSS region transcription start site region 17637
Gm28643 2 45156925 to 45168467 11542 + lincRNA gene predicted gene 28643
Tssr17638 2 45196752 to 45196785 33 + TSS region transcription start site region 17638
Tssr23994 2 45197386 to 45197402 16 - TSS region transcription start site region 23994
Tssr17639 2 45197733 to 45197744 11 + TSS region transcription start site region 17639
Tssr17640 2 45197755 to 45197778 23 + TSS region transcription start site region 17640
Tssr17641 2 45197779 to 45197790 11 + TSS region transcription start site region 17641
Tssr17642 2 45201602 to 45201636 34 + TSS region transcription start site region 17642
Tssr17643 2 45239290 to 45239304 14 + TSS region transcription start site region 17643
Tssr17644 2 45246810 to 45246831 21 + TSS region transcription start site region 17644
Tssr17645 2 45277030 to 45277090 60 + TSS region transcription start site region 17645
Vis1 2 45280724 to 45280924 200 + unclassified non-coding RNA gene viral integration site 1
Gm13475 2 45329232 to 45329465 233 + pseudogene predicted gene 13475
Alcp1 2 45338116 to 68008524 22670408 QTL alcohol preference locus 1, male specific
D2Mit241 2 45338116 to 45338251 135 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 241
Gm13479 2 45357265 to 45404035 46770 + lincRNA gene predicted gene 13479
Gm30728 2 45416487 to 45434487 18000 - lncRNA gene predicted gene, 30728
D2Mit88 2 45457623 to 45457804 181 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 88
Gm30792 2 45534757 to 45538320 3563 - lncRNA gene predicted gene, 30792
Tssr23995 2 45559932 to 45559938 6 - TSS region transcription start site region 23995
Gm30848 2 45572710 to 45584425 11715 + lncRNA gene predicted gene, 30848
Gm13478 2 45647191 to 45647603 412 + pseudogene predicted gene 13478
Tssr17646 2 45680039 to 45680042 3 + TSS region transcription start site region 17646
Tssr17647 2 45696593 to 45696611 18 + TSS region transcription start site region 17647
1700019E08Rik 2 45696605 to 45698447 1842 + lincRNA gene RIKEN cDNA 1700019E08 gene
Gm13465 2 45733457 to 45753311 19854 + lincRNA gene predicted gene 13465
Gm13467 2 45747803 to 45751684 3881 - lincRNA gene predicted gene 13467
Tssr17648 2 45774856 to 45774859 3 + TSS region transcription start site region 17648
Gm13466 2 45809472 to 45810470 998 + pseudogene predicted gene 13466
Gm23072 2 46306336 to 46306458 122 + snoRNA gene predicted gene, 23072
Tssr23996 2 46360441 to 46360442 1 - TSS region transcription start site region 23996
D2Mit269 2 46365792 to 46365904 112 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 269
D2Mit375 2 46365816 to 46365904 88 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 375
Gm13469 2 46406220 to 46406569 349 - pseudogene predicted gene 13469
Gm13470 2 46419535 to 46442710 23175 - lincRNA gene predicted gene 13470
Tssr23997 2 46442681 to 46442713 32 - TSS region transcription start site region 23997
Tssr23998 2 46442866 to 46442880 14 - TSS region transcription start site region 23998
Tssr23999 2 46442899 to 46442914 15 - TSS region transcription start site region 23999
Tssr17649 2 46519977 to 46519980 3 + TSS region transcription start site region 17649
Gm25264 2 46606967 to 46607083 116 - snoRNA gene predicted gene, 25264
Gm25959 2 47541984 to 47542085 101 + miRNA gene predicted gene, 25959
Tssr17650 2 47545327 to 47545330 3 + TSS region transcription start site region 17650
D2Ucl22 2 47556844 to 47557198 354 DNA segment DNA segment, Chr 2, University College London 22
Tssr488 2 47742042 to 47742044 2 + TSS region transcription start site region 488
D2Mit470 2 47930038 to 47930281 243 DNA segment DNA Segment, Chr 2 Massachusetts Institute of Technology 470
Gm13481 2 48062162 to 48156559 94397 - lincRNA gene predicted gene 13481
Gm13471 2 48140146 to 48140578 432 + pseudogene predicted gene 13471
Gm13482 2 48298908 to 48299161 253 + pseudogene predicted gene 13482
Gm25338 2 48384219 to 48384338 119 - snRNA gene predicted gene, 25338
Gm13472 2 48388037 to 48388350 313 + pseudogene predicted gene 13472
Tssr24000 2 48457257 to 48457269 12 - TSS region transcription start site region 24000
Gm39809 2 48490606 to 48539147 48541 - lncRNA gene predicted gene, 39809
Tssr17651 2 48627462 to 48627470 8 + TSS region transcription start site region 17651
D2Mit298.2 2 48675962 to 48676110 148 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 298.2
Tssr489 2 48691503 to 48691510 7 - TSS region transcription start site region 489
Gm31324 2 48793307 to 48798903 5596 + lncRNA gene predicted gene, 31324
Gm13489 2 48809585 to 48810555 970 - pseudogene predicted gene 13489
Cpgi11635 2 48813389 to 48815052 1663 CpG island CpG island 11635
Tssr17652 2 48813998 to 48814013 15 + TSS region transcription start site region 17652
Tssr17653 2 48814016 to 48814040 24 + TSS region transcription start site region 17653
Acvr2a 2 48814109 to 48903264 89155 + protein coding gene activin receptor IIA
Tssr17654 2 48814124 to 48814173 49 + TSS region transcription start site region 17654
Tssr17655 2 48814176 to 48814219 43 + TSS region transcription start site region 17655
Tssr17656 2 48815343 to 48815352 9 + TSS region transcription start site region 17656
Tssr17657 2 48833305 to 48833312 7 + TSS region transcription start site region 17657
D2Mit240 2 48846927 to 48847046 119 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 240
Orc4 2 48902824 to 48950277 47453 - protein coding gene origin recognition complex, subunit 4
Tssr24001 2 48911924 to 48911940 16 - TSS region transcription start site region 24001
Tssr24002 2 48912263 to 48912277 14 - TSS region transcription start site region 24002
Tssr24003 2 48935258 to 48935269 11 - TSS region transcription start site region 24003
Tssr24004 2 48946315 to 48946325 10 - TSS region transcription start site region 24004
Cpgi11636 2 48948838 to 48949564 726 CpG island CpG island 11636
Tssr24005 2 48949206 to 48949256 50 - TSS region transcription start site region 24005
Tssr24006 2 48949264 to 48949275 11 - TSS region transcription start site region 24006
Mbd5 2 48949490 to 49319690 370200 + protein coding gene methyl-CpG binding domain protein 5
Tssr17658 2 48949495 to 48949522 27 + TSS region transcription start site region 17658
Tssr17659 2 48949524 to 48949543 19 + TSS region transcription start site region 17659
Tssr17660 2 48949545 to 48949556 11 + TSS region transcription start site region 17660
Tssr17661 2 48949562 to 48949617 55 + TSS region transcription start site region 17661
Tssr17662 2 48950113 to 48950128 15 + TSS region transcription start site region 17662
Tssr17663 2 48974417 to 48974422 5 + TSS region transcription start site region 17663
Tssr17664 2 48989024 to 48989026 2 + TSS region transcription start site region 17664
D2Mit374 2 49115509 to 49115629 120 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 374
Tssr17665 2 49132492 to 49132510 18 + TSS region transcription start site region 17665
Gm13510 2 49185018 to 49185446 428 + pseudogene predicted gene 13510
Tssr17666 2 49224198 to 49224200 2 + TSS region transcription start site region 17666
Tssr17667 2 49230564 to 49230565 1 + TSS region transcription start site region 17667
Gm13509 2 49308155 to 49309462 1307 + pseudogene predicted gene 13509
Tssr17668 2 49308945 to 49308977 32 + TSS region transcription start site region 17668
D2Mit72 2 49314559 to 49314700 141 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 72
Gm13508 2 49327377 to 49328151 774 - pseudogene predicted gene 13508
Tssr24007 2 49330484 to 49330487 3 - TSS region transcription start site region 24007
Gm25215 2 49398395 to 49398515 120 - snoRNA gene predicted gene, 25215
Cpgi11637 2 49450803 to 49452843 2040 CpG island CpG island 11637
Epc2 2 49451486 to 49551942 100456 + protein coding gene enhancer of polycomb homolog 2
Tssr17669 2 49451488 to 49451559 71 + TSS region transcription start site region 17669
Tssr17670 2 49451842 to 49451849 7 + TSS region transcription start site region 17670
Tssr24008 2 49452861 to 49452874 13 - TSS region transcription start site region 24008
Tssr17671 2 49465929 to 49465931 2 + TSS region transcription start site region 17671
Tssr17672 2 49516803 to 49516804 1 + TSS region transcription start site region 17672
Tssr17673 2 49523609 to 49523613 4 + TSS region transcription start site region 17673
D2Mit376 2 49526896 to 49526990 94 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 376
Tssr17674 2 49527331 to 49527333 2 + TSS region transcription start site region 17674
Tssr17675 2 49562498 to 49562531 33 + TSS region transcription start site region 17675
Cpgi11638 2 49619094 to 49620147 1053 CpG island CpG island 11638
Tssr17676 2 49619252 to 49619272 20 + TSS region transcription start site region 17676
Tssr17677 2 49619277 to 49619343 66 + TSS region transcription start site region 17677
Kif5c 2 49619314 to 49774778 155464 + protein coding gene kinesin family member 5C
Tssr17678 2 49621871 to 49621874 3 + TSS region transcription start site region 17678
Gm13525 2 49680499 to 49680976 477 + pseudogene predicted gene 13525
Tssr17679 2 49698872 to 49698889 17 + TSS region transcription start site region 17679
Tssr17680 2 49700950 to 49700960 10 + TSS region transcription start site region 17680
Tssr24009 2 49710784 to 49710837 53 - TSS region transcription start site region 24009
Tssr17681 2 49721781 to 49721803 22 + TSS region transcription start site region 17681
Tssr17682 2 49721825 to 49721856 31 + TSS region transcription start site region 17682
Tssr24010 2 49730292 to 49730307 15 - TSS region transcription start site region 24010
Tssr24011 2 49743711 to 49743725 14 - TSS region transcription start site region 24011
Tssr17683 2 49743834 to 49743851 17 + TSS region transcription start site region 17683
Tssr17684 2 49744497 to 49744566 69 + TSS region transcription start site region 17684
Tssr17685 2 49744571 to 49744588 17 + TSS region transcription start site region 17685
Gm46738 2 49744753 to 49746875 2122 - lncRNA gene predicted gene, 46738
Cpgi11639 2 49787285 to 49788347 1062 CpG island CpG island 11639
Tssr490 2 49787666 to 49787675 9 + TSS region transcription start site region 490
Tssr17686 2 49787675 to 49787695 20 + TSS region transcription start site region 17686
Lypd6b 2 49787688 to 49948849 161161 + protein coding gene LY6/PLAUR domain containing 6B
Tssr17687 2 49787711 to 49787725 14 + TSS region transcription start site region 17687
Tssr17688 2 49795663 to 49795688 25 + TSS region transcription start site region 17688
Gm13480 2 49805976 to 49812948 6972 - lincRNA gene predicted gene 13480
Tssr17689 2 49811687 to 49811701 14 + TSS region transcription start site region 17689
Tssr17690 2 49846317 to 49846356 39 + TSS region transcription start site region 17690
Tssr17691 2 49890357 to 49890361 4 + TSS region transcription start site region 17691
Gm25223 2 49906771 to 49906880 109 - unclassified non-coding RNA gene predicted gene, 25223
D2Mit373 2 49933014 to 49933136 122 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 373