Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:4413839-5753852

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146 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Frmd4a 2 4017717 to 4614043 596326 + protein coding gene FERM domain containing 4A
Tssr15960 2 4416287 to 4416319 32 + TSS region transcription start site region 15960
Tssr15961 2 4431946 to 4431997 51 + TSS region transcription start site region 15961
Gm13175 2 4458434 to 4466670 8236 - antisense lncRNA gene predicted gene 13175
D2Mit425 2 4459607 to 4459699 92 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology 425
Gm39751 2 4473223 to 4510570 37347 - lncRNA gene predicted gene, 39751
Cpgi11157 2 4559540 to 4560044 504 CpG island CpG island 11157
Tssr15962 2 4559602 to 4559629 27 + TSS region transcription start site region 15962
Tssr15963 2 4559645 to 4559656 11 + TSS region transcription start site region 15963
Tssr22384 2 4559671 to 4559694 23 - TSS region transcription start site region 22384
Tssr15964 2 4559701 to 4559706 5 + TSS region transcription start site region 15964
Tssr15965 2 4559742 to 4559755 13 + TSS region transcription start site region 15965
Tssr15966 2 4559759 to 4559810 51 + TSS region transcription start site region 15966
Tssr15967 2 4559878 to 4559892 14 + TSS region transcription start site region 15967
Tssr15968 2 4559913 to 4559930 17 + TSS region transcription start site region 15968
Tssr15969 2 4559931 to 4559943 12 + TSS region transcription start site region 15969
Tssr15970 2 4560050 to 4560063 13 + TSS region transcription start site region 15970
Tssr15971 2 4560118 to 4560148 30 + TSS region transcription start site region 15971
D2Mit426 2 4561924 to 4562098 174 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology 426
Gm13179 2 4586024 to 4587287 1263 - antisense lncRNA gene predicted gene 13179
Tssr22385 2 4593535 to 4593570 35 - TSS region transcription start site region 22385
Tssr15972 2 4597266 to 4597291 25 + TSS region transcription start site region 15972
D2Mit355 2 4598040 to 4598186 146 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 355
Cpgi11158 2 4603390 to 4604315 925 CpG island CpG island 11158
Prpf18 2 4622058 to 4652113 30055 - protein coding gene pre-mRNA processing factor 18
Cpgi11159 2 4651579 to 4652248 669 CpG island CpG island 11159
Tssr22386 2 4652060 to 4652077 17 - TSS region transcription start site region 22386
Tssr22387 2 4652087 to 4652140 53 - TSS region transcription start site region 22387
Tssr15973 2 4700221 to 4700232 11 + TSS region transcription start site region 15973
Gm13196 2 4700238 to 4700616 378 + pseudogene predicted gene 13196
D2Ertd623e 2 4704666 to 4704879 213 DNA segment DNA segment, Chr 2, ERATO Doi 623, expressed
Cpgi11160 2 4717285 to 4718673 1388 CpG island CpG island 11160
Tssr15974 2 4717825 to 4717893 68 + TSS region transcription start site region 15974
Bend7 2 4717831 to 4802142 84311 + protein coding gene BEN domain containing 7
Tssr15975 2 4718191 to 4718205 14 + TSS region transcription start site region 15975
Tssr15976 2 4739316 to 4739320 4 + TSS region transcription start site region 15976
Tssr391 2 4822621 to 4822629 8 + TSS region transcription start site region 391
Gm36389 2 4825247 to 4829501 4254 + lncRNA gene predicted gene, 36389
D2Mit76 2 4830770 to 4830908 138 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 76
Gm13176 2 4834136 to 4834612 476 - pseudogene predicted gene 13176
Cpgi11161 2 4881169 to 4882802 1633 CpG island CpG island 11161
Tssr15977 2 4881487 to 4881571 84 + TSS region transcription start site region 15977
Sephs1 2 4881564 to 4910557 28993 + protein coding gene selenophosphate synthetase 1
Tssr15978 2 4881756 to 4881772 16 + TSS region transcription start site region 15978
Tssr15979 2 4881798 to 4881836 38 + TSS region transcription start site region 15979
Tssr15980 2 4881849 to 4881860 11 + TSS region transcription start site region 15980
Tssr15981 2 4882204 to 4882252 48 + TSS region transcription start site region 15981
Tssr15982 2 4882271 to 4882293 22 + TSS region transcription start site region 15982
Tssr15983 2 4895874 to 4895880 6 + TSS region transcription start site region 15983
Gm46728 2 4910159 to 4916456 6297 - lncRNA gene predicted gene, 46728
Cpgi11162 2 4918825 to 4919282 457 CpG island CpG island 11162
Tssr15984 2 4918891 to 4918905 14 + TSS region transcription start site region 15984
Tssr15985 2 4919004 to 4919038 34 + TSS region transcription start site region 15985
Phyh 2 4919019 to 4938730 19711 + protein coding gene phytanoyl-CoA hydroxylase
Tssr15986 2 4919041 to 4919062 21 + TSS region transcription start site region 15986
Tssr15987 2 4922610 to 4922631 21 + TSS region transcription start site region 15987
Tssr15988 2 4922820 to 4922856 36 + TSS region transcription start site region 15988
Tssr15989 2 4925591 to 4925624 33 + TSS region transcription start site region 15989
Tssr15990 2 4927374 to 4927389 15 + TSS region transcription start site region 15990
Tssr15991 2 4927484 to 4927497 13 + TSS region transcription start site region 15991
Tssr15992 2 4928658 to 4928667 9 + TSS region transcription start site region 15992
Tssr15993 2 4930736 to 4930766 30 + TSS region transcription start site region 15993
Tssr15994 2 4935136 to 4935138 2 + TSS region transcription start site region 15994
Tssr15995 2 4935990 to 4936026 36 + TSS region transcription start site region 15995
Tssr22388 2 4936034 to 4936051 17 - TSS region transcription start site region 22388
Tssr15996 2 4936039 to 4936056 17 + TSS region transcription start site region 15996
Tssr22389 2 4938382 to 4938406 24 - TSS region transcription start site region 22389
Gm13194 2 4942174 to 4942484 310 + pseudogene predicted gene 13194
Gm13193 2 4956069 to 4956293 224 - pseudogene predicted gene 13193
Tssr22390 2 4956352 to 4956361 9 - TSS region transcription start site region 22390
Gm13192 2 4959545 to 4959752 207 - pseudogene predicted gene 13192
Tssr22391 2 4959774 to 4959778 4 - TSS region transcription start site region 22391
Tssr15997 2 4976113 to 4976164 51 + TSS region transcription start site region 15997
Ucma 2 4976122 to 4985748 9626 + protein coding gene upper zone of growth plate and cartilage matrix associated
Tssr15998 2 4976176 to 4976185 9 + TSS region transcription start site region 15998
D2Mit354 2 4984708 to 4984831 123 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 354
Heal15 2 4984708 to 4984831 123 QTL wound healing/regeneration 15
Mcm10 2 4989714 to 5012791 23077 - protein coding gene minichromosome maintenance 10 replication initiation factor
Tssr22392 2 4993261 to 4993300 39 - TSS region transcription start site region 22392
Tssr15999 2 4994469 to 4994474 5 + TSS region transcription start site region 15999
Tssr22393 2 5001567 to 5001584 17 - TSS region transcription start site region 22393
Cpgi11163 2 5012506 to 5012898 392 CpG island CpG island 11163
Tssr22394 2 5012716 to 5012766 50 - TSS region transcription start site region 22394
A930010G16Rik 2 5018445 to 5019805 1360 unclassified gene RIKEN cDNA A930010G16 gene
Optn 2 5020642 to 5064051 43409 - protein coding gene optineurin
D2Bwg1072e 2 5036296 to 5036513 217 DNA segment DNA segment, Chr 2, Brigham & Women's Genetics 1072 expressed
4930551O13Rik 2 5037280 to 5041133 3853 + antisense lncRNA gene RIKEN cDNA 4930551O13 gene
Tssr22395 2 5062944 to 5062954 10 - TSS region transcription start site region 22395
Cpgi11164 2 5063549 to 5064446 897 CpG island CpG island 11164
Tssr392 2 5063618 to 5063626 8 + TSS region transcription start site region 392
Tssr22396 2 5063932 to 5063971 39 - TSS region transcription start site region 22396
Tssr22397 2 5063975 to 5063986 11 - TSS region transcription start site region 22397
Tssr22398 2 5063996 to 5064048 52 - TSS region transcription start site region 22398
Tssr22399 2 5064052 to 5064075 23 - TSS region transcription start site region 22399
Tssr22400 2 5080567 to 5080573 6 - TSS region transcription start site region 22400
Tssr22401 2 5083816 to 5083827 11 - TSS region transcription start site region 22401
Tssr22402 2 5083839 to 5083852 13 - TSS region transcription start site region 22402
Tssr22403 2 5083863 to 5083872 9 - TSS region transcription start site region 22403
Cpgi11165 2 5098066 to 5098268 202 CpG island CpG island 11165
Gm39755 2 5101028 to 5103438 2410 - lncRNA gene predicted gene, 39755
Cpgi11166 2 5137393 to 5138395 1002 CpG island CpG island 11166
Tssr393 2 5137735 to 5137740 5 + TSS region transcription start site region 393
Gm26776 2 5137749 to 5230864 93115 - lincRNA gene predicted gene, 26776
Tssr16000 2 5137756 to 5137772 16 + TSS region transcription start site region 16000
Ccdc3 2 5137776 to 5230878 93102 + protein coding gene coiled-coil domain containing 3
Tssr16001 2 5137850 to 5137868 18 + TSS region transcription start site region 16001
Gm13198 2 5156555 to 5157107 552 + pseudogene predicted gene 13198
Gm46729 2 5215405 to 5220854 5449 + lncRNA gene predicted gene, 46729
Tssr16002 2 5230053 to 5230062 9 + TSS region transcription start site region 16002
Gm23118 2 5259929 to 5260115 186 - snRNA gene predicted gene, 23118
Gm13197 2 5283650 to 5283874 224 + pseudogene predicted gene 13197
Camk1d 2 5293457 to 5714515 421058 - protein coding gene calcium/calmodulin-dependent protein kinase ID
Tssr22404 2 5296201 to 5296214 13 - TSS region transcription start site region 22404
Tssr22405 2 5297326 to 5297342 16 - TSS region transcription start site region 22405
Tssr22406 2 5306489 to 5306493 4 - TSS region transcription start site region 22406
Gm36906 2 5313211 to 5317500 4289 + lncRNA gene predicted gene, 36906
Tssr22407 2 5339868 to 5339873 5 - TSS region transcription start site region 22407
Tssr22408 2 5379336 to 5379360 24 - TSS region transcription start site region 22408
Tssr394 2 5394172 to 5394173 1 + TSS region transcription start site region 394
Tssr22409 2 5410936 to 5410941 5 - TSS region transcription start site region 22409
Tssr16003 2 5413246 to 5413248 2 + TSS region transcription start site region 16003
Gm36853 2 5488130 to 5496496 8366 + lncRNA gene predicted gene, 36853
Tssr22410 2 5538681 to 5538716 35 - TSS region transcription start site region 22410
Tssr22411 2 5538731 to 5538744 13 - TSS region transcription start site region 22411
Tssr16004 2 5603551 to 5603565 14 + TSS region transcription start site region 16004
Gm13216 2 5603571 to 5604161 590 + pseudogene predicted gene 13216
Tssr22412 2 5657395 to 5657407 12 - TSS region transcription start site region 22412
Tssr22413 2 5670286 to 5670307 21 - TSS region transcription start site region 22413
Tssr22414 2 5671515 to 5671520 5 - TSS region transcription start site region 22414
Tssr22415 2 5672967 to 5672969 2 - TSS region transcription start site region 22415
Tssr22416 2 5675991 to 5676025 34 - TSS region transcription start site region 22416
Tssr22417 2 5676062 to 5676065 3 - TSS region transcription start site region 22417
Tssr22418 2 5676955 to 5676969 14 - TSS region transcription start site region 22418
Tssr22419 2 5676983 to 5676993 10 - TSS region transcription start site region 22419
Tssr22420 2 5677533 to 5677545 12 - TSS region transcription start site region 22420
Tssr22421 2 5682032 to 5682037 5 - TSS region transcription start site region 22421
Tssr16005 2 5683715 to 5683718 3 + TSS region transcription start site region 16005
Tssr22422 2 5697881 to 5697899 18 - TSS region transcription start site region 22422
Tssr22423 2 5698012 to 5698020 8 - TSS region transcription start site region 22423
Cpgi11167 2 5713678 to 5715321 1643 CpG island CpG island 11167
Tssr22424 2 5714341 to 5714402 61 - TSS region transcription start site region 22424
Tssr22425 2 5714435 to 5714446 11 - TSS region transcription start site region 22425
Tssr22426 2 5714463 to 5714487 24 - TSS region transcription start site region 22426
Tssr22427 2 5714490 to 5714538 48 - TSS region transcription start site region 22427
Gm29857 2 5727992 to 5746476 18484 + lncRNA gene predicted gene, 29857
Cpgi11168 2 5746381 to 5746612 231 CpG island CpG island 11168