Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:43801674-46432557

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224 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cfq6 2 31313023 to 44618192 13305169 QTL conditioned fear QTL 6
Arhgap15 2 43748824 to 44395953 647129 + protein coding gene Rho GTPase activating protein 15
Tssr17597 2 43867107 to 43867110 3 + TSS region transcription start site region 17597
Tssr17598 2 43895209 to 43895223 14 + TSS region transcription start site region 17598
Tssr17599 2 43900157 to 43900180 23 + TSS region transcription start site region 17599
Tssr17600 2 43900198 to 43900210 12 + TSS region transcription start site region 17600
D2Mit154 2 43910611 to 43910732 121 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 154
Tssr17601 2 43917268 to 43917272 4 + TSS region transcription start site region 17601
Tssr17602 2 43917526 to 43917568 42 + TSS region transcription start site region 17602
A530045O15Rik 2 43925082 to 43928221 3139 unclassified gene RIKEN cDNA A530045O15 gene
Tssr17603 2 43932176 to 43932179 3 + TSS region transcription start site region 17603
Tssr17604 2 43950542 to 43950552 10 + TSS region transcription start site region 17604
Tssr17605 2 43954269 to 43954275 6 + TSS region transcription start site region 17605
Tssr17606 2 43973084 to 43973103 19 + TSS region transcription start site region 17606
Tssr17607 2 43976623 to 43976627 4 + TSS region transcription start site region 17607
5830407E08Rik 2 43992539 to 43996586 4047 unclassified gene RIKEN cDNA 5830407E08 gene
Tssr17608 2 43997301 to 43997312 11 + TSS region transcription start site region 17608
Tssr17609 2 44029650 to 44029655 5 + TSS region transcription start site region 17609
Arhgap15os 2 44059238 to 44065324 6086 - antisense lncRNA gene Rho GTPase activating protein 15, opposite strand
Tssr17610 2 44118185 to 44118209 24 + TSS region transcription start site region 17610
Tssr17611 2 44160234 to 44160237 3 + TSS region transcription start site region 17611
Tssr17612 2 44160884 to 44160894 10 + TSS region transcription start site region 17612
A430068E04Rik 2 44201369 to 44204948 3579 unclassified gene RIKEN cDNA A430068E04 gene
Tssr17613 2 44243127 to 44243155 28 + TSS region transcription start site region 17613
Tssr17614 2 44310611 to 44310612 1 + TSS region transcription start site region 17614
Tssr17615 2 44335879 to 44335888 9 + TSS region transcription start site region 17615
Tssr17616 2 44335920 to 44335933 13 + TSS region transcription start site region 17616
Tssr17617 2 44341762 to 44341767 5 + TSS region transcription start site region 17617
Gm22867 2 44428935 to 44429043 108 + snRNA gene predicted gene, 22867
Gm39805 2 44432260 to 44462504 30244 + lncRNA gene predicted gene, 39805
Gm39806 2 44495300 to 44501041 5741 - lncRNA gene predicted gene, 39806
Tssr23875 2 44539372 to 44539379 7 - TSS region transcription start site region 23875
Cpgi11627 2 44556772 to 44557341 569 CpG island CpG island 11627
Gtdc1 2 44564412 to 44927657 363245 - protein coding gene glycosyltransferase-like domain containing 1
Tssr23876 2 44635237 to 44635252 15 - TSS region transcription start site region 23876
Gm39807 2 44667569 to 44668705 1136 - lncRNA gene predicted gene, 39807
Gm13477 2 44788265 to 44790951 2686 + pseudogene predicted gene 13477
Tssr23877 2 44920653 to 44920678 25 - TSS region transcription start site region 23877
Cpgi11628 2 44926380 to 44927811 1431 CpG island CpG island 11628
Tssr23878 2 44926891 to 44926899 8 - TSS region transcription start site region 23878
Tssr23879 2 44927194 to 44927205 11 - TSS region transcription start site region 23879
Tssr23880 2 44927206 to 44927239 33 - TSS region transcription start site region 23880
Tssr23881 2 44927284 to 44927317 33 - TSS region transcription start site region 23881
Tssr17618 2 44927358 to 44927419 61 + TSS region transcription start site region 17618
Tssr17619 2 44927435 to 44927446 11 + TSS region transcription start site region 17619
Tssr17620 2 44956606 to 44956644 38 + TSS region transcription start site region 17620
Tssr17621 2 44957408 to 44957414 6 + TSS region transcription start site region 17621
Zeb2 2 44983632 to 45117395 133763 - protein coding gene zinc finger E-box binding homeobox 2
Tssr23882 2 44983902 to 44983906 4 - TSS region transcription start site region 23882
Tssr23883 2 44984561 to 44984574 13 - TSS region transcription start site region 23883
Tssr23884 2 44984606 to 44984617 11 - TSS region transcription start site region 23884
Tssr23885 2 44985189 to 44985200 11 - TSS region transcription start site region 23885
Tssr23886 2 44986477 to 44986488 11 - TSS region transcription start site region 23886
Tssr23887 2 44986495 to 44986506 11 - TSS region transcription start site region 23887
Tssr23888 2 44986534 to 44986560 26 - TSS region transcription start site region 23888
Tssr23889 2 44986586 to 44986607 21 - TSS region transcription start site region 23889
Tssr23890 2 44986609 to 44986625 16 - TSS region transcription start site region 23890
Tssr23891 2 44987418 to 44987490 72 - TSS region transcription start site region 23891
Tssr23892 2 44987720 to 44987793 73 - TSS region transcription start site region 23892
Tssr23893 2 44987798 to 44987821 23 - TSS region transcription start site region 23893
Tssr23894 2 44987999 to 44988004 5 - TSS region transcription start site region 23894
Tssr23895 2 44988081 to 44988124 43 - TSS region transcription start site region 23895
Tssr23896 2 44988433 to 44988454 21 - TSS region transcription start site region 23896
Tssr23897 2 44988531 to 44988543 12 - TSS region transcription start site region 23897
Cpgi11629 2 44988575 to 44989080 505 CpG island CpG island 11629
Tssr17622 2 44988708 to 44988757 49 + TSS region transcription start site region 17622
Tssr23898 2 44988767 to 44988794 27 - TSS region transcription start site region 23898
Tssr23899 2 44988855 to 44988869 14 - TSS region transcription start site region 23899
Tssr23900 2 44988871 to 44988895 24 - TSS region transcription start site region 23900
Tssr23901 2 44988914 to 44988937 23 - TSS region transcription start site region 23901
Tssr23902 2 44989060 to 44989072 12 - TSS region transcription start site region 23902
Tssr23903 2 44989792 to 44989817 25 - TSS region transcription start site region 23903
Tssr23904 2 44991179 to 44991196 17 - TSS region transcription start site region 23904
3110027N22Rik 2 44992000 to 44993287 1287 unclassified gene RIKEN cDNA 3110027N22 gene
Tssr23905 2 44994464 to 44994482 18 - TSS region transcription start site region 23905
Tssr23906 2 44996099 to 44996115 16 - TSS region transcription start site region 23906
Tssr23907 2 44996148 to 44996159 11 - TSS region transcription start site region 23907
Tssr23908 2 44996462 to 44996486 24 - TSS region transcription start site region 23908
Tssr23909 2 44996507 to 44996517 10 - TSS region transcription start site region 23909
Tssr23910 2 44996566 to 44996583 17 - TSS region transcription start site region 23910
Tssr23911 2 44996764 to 44996790 26 - TSS region transcription start site region 23911
Tssr23912 2 44996860 to 44996870 10 - TSS region transcription start site region 23912
Tssr23913 2 44997019 to 44997031 12 - TSS region transcription start site region 23913
Tssr23914 2 44997128 to 44997147 19 - TSS region transcription start site region 23914
Tssr23915 2 44997278 to 44997291 13 - TSS region transcription start site region 23915
Tssr23916 2 44997297 to 44997310 13 - TSS region transcription start site region 23916
Tssr23917 2 44997345 to 44997352 7 - TSS region transcription start site region 23917
Tssr23918 2 44997390 to 44997411 21 - TSS region transcription start site region 23918
Tssr23919 2 44997649 to 44997659 10 - TSS region transcription start site region 23919
Cpgi11630 2 45001613 to 45001935 322 CpG island CpG island 11630
Tssr23920 2 45004437 to 45004484 47 - TSS region transcription start site region 23920
Tssr23921 2 45004535 to 45004551 16 - TSS region transcription start site region 23921
Tssr23922 2 45004565 to 45004602 37 - TSS region transcription start site region 23922
Tssr23923 2 45004670 to 45004694 24 - TSS region transcription start site region 23923
Tssr23924 2 45004984 to 45005050 66 - TSS region transcription start site region 23924
Tssr23925 2 45005075 to 45005115 40 - TSS region transcription start site region 23925
Tssr23926 2 45005256 to 45005274 18 - TSS region transcription start site region 23926
Tssr23927 2 45017061 to 45017076 15 - TSS region transcription start site region 23927
Tssr23928 2 45017931 to 45017942 11 - TSS region transcription start site region 23928
Tssr23929 2 45019142 to 45019155 13 - TSS region transcription start site region 23929
Tssr23930 2 45022957 to 45022984 27 - TSS region transcription start site region 23930
Mir5129 2 45023100 to 45023177 77 - miRNA gene microRNA 5129
Tssr23931 2 45033557 to 45033567 10 - TSS region transcription start site region 23931
Tssr23932 2 45036474 to 45036516 42 - TSS region transcription start site region 23932
Tssr23933 2 45037100 to 45037112 12 - TSS region transcription start site region 23933
Tssr23934 2 45043604 to 45043637 33 - TSS region transcription start site region 23934
Tssr23935 2 45056793 to 45056814 21 - TSS region transcription start site region 23935
Tssr23936 2 45057512 to 45057515 3 - TSS region transcription start site region 23936
Tssr23937 2 45059571 to 45059585 14 - TSS region transcription start site region 23937
Tssr487 2 45060997 to 45061038 41 + TSS region transcription start site region 487
Tssr23938 2 45064517 to 45064561 44 - TSS region transcription start site region 23938
Tssr23939 2 45065264 to 45065285 21 - TSS region transcription start site region 23939
Tssr23940 2 45066626 to 45066646 20 - TSS region transcription start site region 23940
Tssr23941 2 45066774 to 45066796 22 - TSS region transcription start site region 23941
Tssr23942 2 45067096 to 45067109 13 - TSS region transcription start site region 23942
Tssr23943 2 45067135 to 45067151 16 - TSS region transcription start site region 23943
Tssr23944 2 45067161 to 45067174 13 - TSS region transcription start site region 23944
Tssr23945 2 45068405 to 45068422 17 - TSS region transcription start site region 23945
Tssr17623 2 45075435 to 45075439 4 + TSS region transcription start site region 17623
Tssr23946 2 45085438 to 45085451 13 - TSS region transcription start site region 23946
Tssr17624 2 45085949 to 45085979 30 + TSS region transcription start site region 17624
Tssr23947 2 45088243 to 45088259 16 - TSS region transcription start site region 23947
Tssr23948 2 45090839 to 45090844 5 - TSS region transcription start site region 23948
Tssr23949 2 45091346 to 45091355 9 - TSS region transcription start site region 23949
Tssr23950 2 45092484 to 45092495 11 - TSS region transcription start site region 23950
Tssr23951 2 45094250 to 45094267 17 - TSS region transcription start site region 23951
Tssr23952 2 45095914 to 45095954 40 - TSS region transcription start site region 23952
Tssr23953 2 45096782 to 45096798 16 - TSS region transcription start site region 23953
Tssr23954 2 45098749 to 45098773 24 - TSS region transcription start site region 23954
Tssr23955 2 45098866 to 45098889 23 - TSS region transcription start site region 23955
Tssr23956 2 45099396 to 45099419 23 - TSS region transcription start site region 23956
Tssr23957 2 45099472 to 45099486 14 - TSS region transcription start site region 23957
Tssr23958 2 45099573 to 45099588 15 - TSS region transcription start site region 23958
Tssr23959 2 45102129 to 45102155 26 - TSS region transcription start site region 23959
Tssr23960 2 45102189 to 45102252 63 - TSS region transcription start site region 23960
Tssr23961 2 45102477 to 45102494 17 - TSS region transcription start site region 23961
Tssr23962 2 45103548 to 45103549 1 - TSS region transcription start site region 23962
Tssr23963 2 45104232 to 45104252 20 - TSS region transcription start site region 23963
Tssr17625 2 45106192 to 45106213 21 + TSS region transcription start site region 17625
Tssr17626 2 45106275 to 45106283 8 + TSS region transcription start site region 17626
Tssr23964 2 45106896 to 45106907 11 - TSS region transcription start site region 23964
Cpgi11631 2 45108695 to 45108866 171 CpG island CpG island 11631
Cpgi11632 2 45109265 to 45110454 1189 CpG island CpG island 11632
Tssr23965 2 45110040 to 45110049 9 - TSS region transcription start site region 23965
Tssr23966 2 45110073 to 45110104 31 - TSS region transcription start site region 23966
Tssr23967 2 45110142 to 45110165 23 - TSS region transcription start site region 23967
Tssr23968 2 45110167 to 45110183 16 - TSS region transcription start site region 23968
Tssr23969 2 45110198 to 45110207 9 - TSS region transcription start site region 23969
Tssr23970 2 45110215 to 45110234 19 - TSS region transcription start site region 23970
Tssr23971 2 45110241 to 45110265 24 - TSS region transcription start site region 23971
Tssr23972 2 45110268 to 45110295 27 - TSS region transcription start site region 23972
Tssr23973 2 45110336 to 45110376 40 - TSS region transcription start site region 23973
Tssr23974 2 45110377 to 45110388 11 - TSS region transcription start site region 23974
Tssr17627 2 45110445 to 45110457 12 + TSS region transcription start site region 17627
Tssr17628 2 45110472 to 45110495 23 + TSS region transcription start site region 17628
Tssr17629 2 45110972 to 45111008 36 + TSS region transcription start site region 17629
Cpgi11633 2 45111106 to 45111258 152 CpG island CpG island 11633
Tssr23975 2 45111129 to 45111136 7 - TSS region transcription start site region 23975
Zeb2os 2 45111138 to 45114087 2949 + antisense lncRNA gene zinc finger E-box binding homeobox 2, opposite strand
Tssr23976 2 45111139 to 45111155 16 - TSS region transcription start site region 23976
Tssr17630 2 45111150 to 45111166 16 + TSS region transcription start site region 17630
Gm27761 2 45111171 to 45111301 130 + unclassified non-coding RNA gene predicted gene, 27761
Tssr17631 2 45111178 to 45111192 14 + TSS region transcription start site region 17631
Tssr17632 2 45111195 to 45111214 19 + TSS region transcription start site region 17632
Tssr23977 2 45111259 to 45111319 60 - TSS region transcription start site region 23977
Tssr23978 2 45111708 to 45111721 13 - TSS region transcription start site region 23978
Tssr23979 2 45111838 to 45111862 24 - TSS region transcription start site region 23979
Tssr23980 2 45112083 to 45112094 11 - TSS region transcription start site region 23980
Tssr23981 2 45112115 to 45112134 19 - TSS region transcription start site region 23981
Tssr17633 2 45112236 to 45112255 19 + TSS region transcription start site region 17633
Tssr17634 2 45112269 to 45112280 11 + TSS region transcription start site region 17634
Tssr17635 2 45112290 to 45112304 14 + TSS region transcription start site region 17635
Tssr23982 2 45112992 to 45113010 18 - TSS region transcription start site region 23982
Tssr23983 2 45113201 to 45113214 13 - TSS region transcription start site region 23983
Tssr23984 2 45113217 to 45113238 21 - TSS region transcription start site region 23984
Tssr23985 2 45113255 to 45113275 20 - TSS region transcription start site region 23985
Gm27404 2 45113313 to 45113415 102 + unclassified non-coding RNA gene predicted gene, 27404
Tssr23986 2 45113900 to 45113927 27 - TSS region transcription start site region 23986
Gm27645 2 45113908 to 45113984 76 + unclassified non-coding RNA gene predicted gene, 27645
Tssr23987 2 45113929 to 45113952 23 - TSS region transcription start site region 23987
Cpgi11634 2 45116674 to 45117557 883 CpG island CpG island 11634
Tssr23988 2 45116964 to 45116998 34 - TSS region transcription start site region 23988
Tssr17636 2 45117231 to 45117284 53 + TSS region transcription start site region 17636
Tssr23989 2 45117301 to 45117345 44 - TSS region transcription start site region 23989
Tssr23990 2 45117349 to 45117375 26 - TSS region transcription start site region 23990
Tssr23991 2 45117400 to 45117411 11 - TSS region transcription start site region 23991
Tssr23992 2 45117426 to 45117516 90 - TSS region transcription start site region 23992
Tssr23993 2 45117523 to 45117539 16 - TSS region transcription start site region 23993
Tssr17637 2 45133475 to 45133480 5 + TSS region transcription start site region 17637
Gm28643 2 45156925 to 45168467 11542 + lincRNA gene predicted gene 28643
Tssr17638 2 45196752 to 45196785 33 + TSS region transcription start site region 17638
Tssr23994 2 45197386 to 45197402 16 - TSS region transcription start site region 23994
Tssr17639 2 45197733 to 45197744 11 + TSS region transcription start site region 17639
Tssr17640 2 45197755 to 45197778 23 + TSS region transcription start site region 17640
Tssr17641 2 45197779 to 45197790 11 + TSS region transcription start site region 17641
Tssr17642 2 45201602 to 45201636 34 + TSS region transcription start site region 17642
Tssr17643 2 45239290 to 45239304 14 + TSS region transcription start site region 17643
Tssr17644 2 45246810 to 45246831 21 + TSS region transcription start site region 17644
Tssr17645 2 45277030 to 45277090 60 + TSS region transcription start site region 17645
Vis1 2 45280724 to 45280924 200 + unclassified non-coding RNA gene viral integration site 1