Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:43054238-45070324

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140 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cfq6 2 31313023 to 44618192 13305169 QTL conditioned fear QTL 6
Gm30225 2 43128301 to 43131632 3331 + lncRNA gene predicted gene, 30225
Tssr17582 2 43128685 to 43128692 7 + TSS region transcription start site region 17582
Tssr17583 2 43128705 to 43128713 8 + TSS region transcription start site region 17583
Tssr17584 2 43128733 to 43128745 12 + TSS region transcription start site region 17584
Tssr17585 2 43128780 to 43128788 8 + TSS region transcription start site region 17585
Tssr17586 2 43183907 to 43183909 2 + TSS region transcription start site region 17586
Tssr17587 2 43195676 to 43195719 43 + TSS region transcription start site region 17587
Tssr17588 2 43366159 to 43366198 39 + TSS region transcription start site region 17588
Gm13464 2 43518464 to 43519398 934 - pseudogene predicted gene 13464
Tssr17589 2 43555321 to 43555338 17 + TSS region transcription start site region 17589
Kynu 2 43555329 to 43682715 127386 + protein coding gene kynureninase
Tssr17590 2 43555345 to 43555355 10 + TSS region transcription start site region 17590
Tssr17591 2 43555362 to 43555367 5 + TSS region transcription start site region 17591
Tssr17592 2 43625160 to 43625170 10 + TSS region transcription start site region 17592
Tssr17593 2 43635284 to 43635290 6 + TSS region transcription start site region 17593
Tssr17594 2 43659652 to 43659654 2 + TSS region transcription start site region 17594
Gm30374 2 43710210 to 43729442 19232 - lncRNA gene predicted gene, 30374
Gm39804 2 43738335 to 43787408 49073 - lncRNA gene predicted gene, 39804
Tssr23873 2 43738675 to 43738680 5 - TSS region transcription start site region 23873
Tssr23874 2 43739016 to 43739029 13 - TSS region transcription start site region 23874
Tssr17595 2 43739524 to 43739547 23 + TSS region transcription start site region 17595
Tssr17596 2 43748802 to 43748875 73 + TSS region transcription start site region 17596
Arhgap15 2 43748824 to 44395953 647129 + protein coding gene Rho GTPase activating protein 15
Tssr17597 2 43867107 to 43867110 3 + TSS region transcription start site region 17597
Tssr17598 2 43895209 to 43895223 14 + TSS region transcription start site region 17598
Tssr17599 2 43900157 to 43900180 23 + TSS region transcription start site region 17599
Tssr17600 2 43900198 to 43900210 12 + TSS region transcription start site region 17600
D2Mit154 2 43910611 to 43910732 121 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 154
Tssr17601 2 43917268 to 43917272 4 + TSS region transcription start site region 17601
Tssr17602 2 43917526 to 43917568 42 + TSS region transcription start site region 17602
A530045O15Rik 2 43925082 to 43928221 3139 unclassified gene RIKEN cDNA A530045O15 gene
Tssr17603 2 43932176 to 43932179 3 + TSS region transcription start site region 17603
Tssr17604 2 43950542 to 43950552 10 + TSS region transcription start site region 17604
Tssr17605 2 43954269 to 43954275 6 + TSS region transcription start site region 17605
Tssr17606 2 43973084 to 43973103 19 + TSS region transcription start site region 17606
Tssr17607 2 43976623 to 43976627 4 + TSS region transcription start site region 17607
5830407E08Rik 2 43992539 to 43996586 4047 unclassified gene RIKEN cDNA 5830407E08 gene
Tssr17608 2 43997301 to 43997312 11 + TSS region transcription start site region 17608
Tssr17609 2 44029650 to 44029655 5 + TSS region transcription start site region 17609
Arhgap15os 2 44059238 to 44065324 6086 - antisense lncRNA gene Rho GTPase activating protein 15, opposite strand
Tssr17610 2 44118185 to 44118209 24 + TSS region transcription start site region 17610
Tssr17611 2 44160234 to 44160237 3 + TSS region transcription start site region 17611
Tssr17612 2 44160884 to 44160894 10 + TSS region transcription start site region 17612
A430068E04Rik 2 44201369 to 44204948 3579 unclassified gene RIKEN cDNA A430068E04 gene
Tssr17613 2 44243127 to 44243155 28 + TSS region transcription start site region 17613
Tssr17614 2 44310611 to 44310612 1 + TSS region transcription start site region 17614
Tssr17615 2 44335879 to 44335888 9 + TSS region transcription start site region 17615
Tssr17616 2 44335920 to 44335933 13 + TSS region transcription start site region 17616
Tssr17617 2 44341762 to 44341767 5 + TSS region transcription start site region 17617
Gm22867 2 44428935 to 44429043 108 + snRNA gene predicted gene, 22867
Gm39805 2 44432260 to 44462504 30244 + lncRNA gene predicted gene, 39805
Gm39806 2 44495300 to 44501041 5741 - lncRNA gene predicted gene, 39806
Tssr23875 2 44539372 to 44539379 7 - TSS region transcription start site region 23875
Cpgi11627 2 44556772 to 44557341 569 CpG island CpG island 11627
Gtdc1 2 44564412 to 44927657 363245 - protein coding gene glycosyltransferase-like domain containing 1
Tssr23876 2 44635237 to 44635252 15 - TSS region transcription start site region 23876
Gm39807 2 44667569 to 44668705 1136 - lncRNA gene predicted gene, 39807
Gm13477 2 44788265 to 44790951 2686 + pseudogene predicted gene 13477
Tssr23877 2 44920653 to 44920678 25 - TSS region transcription start site region 23877
Cpgi11628 2 44926380 to 44927811 1431 CpG island CpG island 11628
Tssr23878 2 44926891 to 44926899 8 - TSS region transcription start site region 23878
Tssr23879 2 44927194 to 44927205 11 - TSS region transcription start site region 23879
Tssr23880 2 44927206 to 44927239 33 - TSS region transcription start site region 23880
Tssr23881 2 44927284 to 44927317 33 - TSS region transcription start site region 23881
Tssr17618 2 44927358 to 44927419 61 + TSS region transcription start site region 17618
Tssr17619 2 44927435 to 44927446 11 + TSS region transcription start site region 17619
Tssr17620 2 44956606 to 44956644 38 + TSS region transcription start site region 17620
Tssr17621 2 44957408 to 44957414 6 + TSS region transcription start site region 17621
Zeb2 2 44983632 to 45117395 133763 - protein coding gene zinc finger E-box binding homeobox 2
Tssr23882 2 44983902 to 44983906 4 - TSS region transcription start site region 23882
Tssr23883 2 44984561 to 44984574 13 - TSS region transcription start site region 23883
Tssr23884 2 44984606 to 44984617 11 - TSS region transcription start site region 23884
Tssr23885 2 44985189 to 44985200 11 - TSS region transcription start site region 23885
Tssr23886 2 44986477 to 44986488 11 - TSS region transcription start site region 23886
Tssr23887 2 44986495 to 44986506 11 - TSS region transcription start site region 23887
Tssr23888 2 44986534 to 44986560 26 - TSS region transcription start site region 23888
Tssr23889 2 44986586 to 44986607 21 - TSS region transcription start site region 23889
Tssr23890 2 44986609 to 44986625 16 - TSS region transcription start site region 23890
Tssr23891 2 44987418 to 44987490 72 - TSS region transcription start site region 23891
Tssr23892 2 44987720 to 44987793 73 - TSS region transcription start site region 23892
Tssr23893 2 44987798 to 44987821 23 - TSS region transcription start site region 23893
Tssr23894 2 44987999 to 44988004 5 - TSS region transcription start site region 23894
Tssr23895 2 44988081 to 44988124 43 - TSS region transcription start site region 23895
Tssr23896 2 44988433 to 44988454 21 - TSS region transcription start site region 23896
Tssr23897 2 44988531 to 44988543 12 - TSS region transcription start site region 23897
Cpgi11629 2 44988575 to 44989080 505 CpG island CpG island 11629
Tssr17622 2 44988708 to 44988757 49 + TSS region transcription start site region 17622
Tssr23898 2 44988767 to 44988794 27 - TSS region transcription start site region 23898
Tssr23899 2 44988855 to 44988869 14 - TSS region transcription start site region 23899
Tssr23900 2 44988871 to 44988895 24 - TSS region transcription start site region 23900
Tssr23901 2 44988914 to 44988937 23 - TSS region transcription start site region 23901
Tssr23902 2 44989060 to 44989072 12 - TSS region transcription start site region 23902
Tssr23903 2 44989792 to 44989817 25 - TSS region transcription start site region 23903
Tssr23904 2 44991179 to 44991196 17 - TSS region transcription start site region 23904
3110027N22Rik 2 44992000 to 44993287 1287 unclassified gene RIKEN cDNA 3110027N22 gene
Tssr23905 2 44994464 to 44994482 18 - TSS region transcription start site region 23905
Tssr23906 2 44996099 to 44996115 16 - TSS region transcription start site region 23906
Tssr23907 2 44996148 to 44996159 11 - TSS region transcription start site region 23907
Tssr23908 2 44996462 to 44996486 24 - TSS region transcription start site region 23908
Tssr23909 2 44996507 to 44996517 10 - TSS region transcription start site region 23909
Tssr23910 2 44996566 to 44996583 17 - TSS region transcription start site region 23910
Tssr23911 2 44996764 to 44996790 26 - TSS region transcription start site region 23911
Tssr23912 2 44996860 to 44996870 10 - TSS region transcription start site region 23912
Tssr23913 2 44997019 to 44997031 12 - TSS region transcription start site region 23913
Tssr23914 2 44997128 to 44997147 19 - TSS region transcription start site region 23914
Tssr23915 2 44997278 to 44997291 13 - TSS region transcription start site region 23915
Tssr23916 2 44997297 to 44997310 13 - TSS region transcription start site region 23916
Tssr23917 2 44997345 to 44997352 7 - TSS region transcription start site region 23917
Tssr23918 2 44997390 to 44997411 21 - TSS region transcription start site region 23918
Tssr23919 2 44997649 to 44997659 10 - TSS region transcription start site region 23919
Cpgi11630 2 45001613 to 45001935 322 CpG island CpG island 11630
Tssr23920 2 45004437 to 45004484 47 - TSS region transcription start site region 23920
Tssr23921 2 45004535 to 45004551 16 - TSS region transcription start site region 23921
Tssr23922 2 45004565 to 45004602 37 - TSS region transcription start site region 23922
Tssr23923 2 45004670 to 45004694 24 - TSS region transcription start site region 23923
Tssr23924 2 45004984 to 45005050 66 - TSS region transcription start site region 23924
Tssr23925 2 45005075 to 45005115 40 - TSS region transcription start site region 23925
Tssr23926 2 45005256 to 45005274 18 - TSS region transcription start site region 23926
Tssr23927 2 45017061 to 45017076 15 - TSS region transcription start site region 23927
Tssr23928 2 45017931 to 45017942 11 - TSS region transcription start site region 23928
Tssr23929 2 45019142 to 45019155 13 - TSS region transcription start site region 23929
Tssr23930 2 45022957 to 45022984 27 - TSS region transcription start site region 23930
Mir5129 2 45023100 to 45023177 77 - miRNA gene microRNA 5129
Tssr23931 2 45033557 to 45033567 10 - TSS region transcription start site region 23931
Tssr23932 2 45036474 to 45036516 42 - TSS region transcription start site region 23932
Tssr23933 2 45037100 to 45037112 12 - TSS region transcription start site region 23933
Tssr23934 2 45043604 to 45043637 33 - TSS region transcription start site region 23934
Tssr23935 2 45056793 to 45056814 21 - TSS region transcription start site region 23935
Tssr23936 2 45057512 to 45057515 3 - TSS region transcription start site region 23936
Tssr23937 2 45059571 to 45059585 14 - TSS region transcription start site region 23937
Tssr487 2 45060997 to 45061038 41 + TSS region transcription start site region 487
Tssr23938 2 45064517 to 45064561 44 - TSS region transcription start site region 23938
Tssr23939 2 45065264 to 45065285 21 - TSS region transcription start site region 23939
Tssr23940 2 45066626 to 45066646 20 - TSS region transcription start site region 23940
Tssr23941 2 45066774 to 45066796 22 - TSS region transcription start site region 23941
Tssr23942 2 45067096 to 45067109 13 - TSS region transcription start site region 23942
Tssr23943 2 45067135 to 45067151 16 - TSS region transcription start site region 23943
Tssr23944 2 45067161 to 45067174 13 - TSS region transcription start site region 23944
Tssr23945 2 45068405 to 45068422 17 - TSS region transcription start site region 23945