Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:41052538-44762662

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95 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cfq6 2 31313023 to 44618192 13305169 QTL conditioned fear QTL 6
Lrp1b 2 40595290 to 42653631 2058341 - protein coding gene low density lipoprotein-related protein 1B
Tssr23855 2 41081943 to 41081946 3 - TSS region transcription start site region 23855
D2Mit466 2 41225066 to 41225178 112 DNA segment DNA Segment, Chr 2 Massachusetts Institute of Technology 466
Gm30138 2 41292759 to 41340995 48236 + lncRNA gene predicted gene, 30138
D2Ucl4 2 41369511 to 41369723 212 DNA segment DNA segment, Chr 2, University College London 4
D2Dcr134 2 41384026 to 41384121 95 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 134
D2Mit371 2 41495188 to 41495306 118 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 371
D2Mit468 2 41551079 to 41551203 124 DNA segment DNA Segment, Chr 2 Massachusetts Institute of Technology 468
Gm13461 2 41987473 to 41988829 1356 - pseudogene predicted gene 13461
Tssr23856 2 41988849 to 41988871 22 - TSS region transcription start site region 23856
Tssr23857 2 42058842 to 42058848 6 - TSS region transcription start site region 23857
6430605C03Rik 2 42068452 to 42069903 1451 unclassified gene RIKEN cDNA 6430605C03 gene
Tssr23858 2 42079633 to 42079637 4 - TSS region transcription start site region 23858
Gm13463 2 42124621 to 42124853 232 + pseudogene predicted gene 13463
9030418E23Rik 2 42137840 to 42138762 922 unclassified gene RIKEN cDNA 9030418E23 gene
Tssr23859 2 42163592 to 42163600 8 - TSS region transcription start site region 23859
Tssr23860 2 42165285 to 42165293 8 - TSS region transcription start site region 23860
Tssr23861 2 42169871 to 42169883 12 - TSS region transcription start site region 23861
Tssr23862 2 42245066 to 42245071 5 - TSS region transcription start site region 23862
Tssr23863 2 42256628 to 42256632 4 - TSS region transcription start site region 23863
Tssr23864 2 42288926 to 42288928 2 - TSS region transcription start site region 23864
Mir6336 2 42447439 to 42447568 129 - miRNA gene microRNA 6336
Tssr17581 2 42530665 to 42530668 3 + TSS region transcription start site region 17581
D2Mit297 2 42605486 to 42605626 140 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 297
Tssr23865 2 42643823 to 42643827 4 - TSS region transcription start site region 23865
Cpgi11626 2 42652605 to 42653247 642 CpG island CpG island 11626
Tssr23866 2 42652843 to 42652854 11 - TSS region transcription start site region 23866
Tssr23867 2 42652973 to 42652996 23 - TSS region transcription start site region 23867
Tssr23868 2 42653002 to 42653028 26 - TSS region transcription start site region 23868
Tssr23869 2 42653029 to 42653050 21 - TSS region transcription start site region 23869
Tssr23870 2 42653062 to 42653077 15 - TSS region transcription start site region 23870
Tssr23871 2 42653293 to 42653302 9 - TSS region transcription start site region 23871
Tssr23872 2 42653317 to 42653329 12 - TSS region transcription start site region 23872
Gm24350 2 42809035 to 42809166 131 + snoRNA gene predicted gene, 24350
Tssr486 2 42823671 to 42823673 2 + TSS region transcription start site region 486
Gm39803 2 42872692 to 42918557 45865 + lncRNA gene predicted gene, 39803
D2Mit322 2 42907538 to 42907662 124 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 322
Gm30225 2 43128301 to 43131632 3331 + lncRNA gene predicted gene, 30225
Tssr17582 2 43128685 to 43128692 7 + TSS region transcription start site region 17582
Tssr17583 2 43128705 to 43128713 8 + TSS region transcription start site region 17583
Tssr17584 2 43128733 to 43128745 12 + TSS region transcription start site region 17584
Tssr17585 2 43128780 to 43128788 8 + TSS region transcription start site region 17585
Tssr17586 2 43183907 to 43183909 2 + TSS region transcription start site region 17586
Tssr17587 2 43195676 to 43195719 43 + TSS region transcription start site region 17587
Tssr17588 2 43366159 to 43366198 39 + TSS region transcription start site region 17588
Gm13464 2 43518464 to 43519398 934 - pseudogene predicted gene 13464
Tssr17589 2 43555321 to 43555338 17 + TSS region transcription start site region 17589
Kynu 2 43555329 to 43682715 127386 + protein coding gene kynureninase
Tssr17590 2 43555345 to 43555355 10 + TSS region transcription start site region 17590
Tssr17591 2 43555362 to 43555367 5 + TSS region transcription start site region 17591
Tssr17592 2 43625160 to 43625170 10 + TSS region transcription start site region 17592
Tssr17593 2 43635284 to 43635290 6 + TSS region transcription start site region 17593
Tssr17594 2 43659652 to 43659654 2 + TSS region transcription start site region 17594
Gm30374 2 43710210 to 43729442 19232 - lncRNA gene predicted gene, 30374
Gm39804 2 43738335 to 43787408 49073 - lncRNA gene predicted gene, 39804
Tssr23873 2 43738675 to 43738680 5 - TSS region transcription start site region 23873
Tssr23874 2 43739016 to 43739029 13 - TSS region transcription start site region 23874
Tssr17595 2 43739524 to 43739547 23 + TSS region transcription start site region 17595
Tssr17596 2 43748802 to 43748875 73 + TSS region transcription start site region 17596
Arhgap15 2 43748824 to 44395953 647129 + protein coding gene Rho GTPase activating protein 15
Tssr17597 2 43867107 to 43867110 3 + TSS region transcription start site region 17597
Tssr17598 2 43895209 to 43895223 14 + TSS region transcription start site region 17598
Tssr17599 2 43900157 to 43900180 23 + TSS region transcription start site region 17599
Tssr17600 2 43900198 to 43900210 12 + TSS region transcription start site region 17600
D2Mit154 2 43910611 to 43910732 121 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 154
Tssr17601 2 43917268 to 43917272 4 + TSS region transcription start site region 17601
Tssr17602 2 43917526 to 43917568 42 + TSS region transcription start site region 17602
A530045O15Rik 2 43925082 to 43928221 3139 unclassified gene RIKEN cDNA A530045O15 gene
Tssr17603 2 43932176 to 43932179 3 + TSS region transcription start site region 17603
Tssr17604 2 43950542 to 43950552 10 + TSS region transcription start site region 17604
Tssr17605 2 43954269 to 43954275 6 + TSS region transcription start site region 17605
Tssr17606 2 43973084 to 43973103 19 + TSS region transcription start site region 17606
Tssr17607 2 43976623 to 43976627 4 + TSS region transcription start site region 17607
5830407E08Rik 2 43992539 to 43996586 4047 unclassified gene RIKEN cDNA 5830407E08 gene
Tssr17608 2 43997301 to 43997312 11 + TSS region transcription start site region 17608
Tssr17609 2 44029650 to 44029655 5 + TSS region transcription start site region 17609
Arhgap15os 2 44059238 to 44065324 6086 - antisense lncRNA gene Rho GTPase activating protein 15, opposite strand
Tssr17610 2 44118185 to 44118209 24 + TSS region transcription start site region 17610
Tssr17611 2 44160234 to 44160237 3 + TSS region transcription start site region 17611
Tssr17612 2 44160884 to 44160894 10 + TSS region transcription start site region 17612
A430068E04Rik 2 44201369 to 44204948 3579 unclassified gene RIKEN cDNA A430068E04 gene
Tssr17613 2 44243127 to 44243155 28 + TSS region transcription start site region 17613
Tssr17614 2 44310611 to 44310612 1 + TSS region transcription start site region 17614
Tssr17615 2 44335879 to 44335888 9 + TSS region transcription start site region 17615
Tssr17616 2 44335920 to 44335933 13 + TSS region transcription start site region 17616
Tssr17617 2 44341762 to 44341767 5 + TSS region transcription start site region 17617
Gm22867 2 44428935 to 44429043 108 + snRNA gene predicted gene, 22867
Gm39805 2 44432260 to 44462504 30244 + lncRNA gene predicted gene, 39805
Gm39806 2 44495300 to 44501041 5741 - lncRNA gene predicted gene, 39806
Tssr23875 2 44539372 to 44539379 7 - TSS region transcription start site region 23875
Cpgi11627 2 44556772 to 44557341 569 CpG island CpG island 11627
Gtdc1 2 44564412 to 44927657 363245 - protein coding gene glycosyltransferase-like domain containing 1
Tssr23876 2 44635237 to 44635252 15 - TSS region transcription start site region 23876
Gm39807 2 44667569 to 44668705 1136 - lncRNA gene predicted gene, 39807