Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:40030290-43218631

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65 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm13453 2 40127504 to 40127860 356 - pseudogene predicted gene 13453
Gm13457 2 40177022 to 40177455 433 + pseudogene predicted gene 13457
Gm13458 2 40178266 to 40178632 366 - pseudogene predicted gene 13458
Gm13455 2 40287162 to 40287678 516 + pseudogene predicted gene 13455
Gm24467 2 40298517 to 40298642 125 + snoRNA gene predicted gene, 24467
Cpgi11625 2 40487114 to 40487324 210 CpG island CpG island 11625
D2Dcr132 2 40516743 to 40516839 96 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 132
Tssr17578 2 40555682 to 40555693 11 + TSS region transcription start site region 17578
Gm13456 2 40555752 to 40557116 1364 + pseudogene predicted gene 13456
Tssr17579 2 40556896 to 40556910 14 + TSS region transcription start site region 17579
Lrp1b 2 40595290 to 42653631 2058341 - protein coding gene low density lipoprotein-related protein 1B
Gm27348 2 40598374 to 40598543 169 - unclassified non-coding RNA gene predicted gene, 27348
D2Dcr133 2 40754094 to 40754189 95 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 133
D2Mit369 2 40799133 to 40799257 124 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 369
Tubisq1 2 40799133 to 40799257 124 QTL tubulointerstitial injury severity, QTL 1
D2Dcr49 2 40799136 to 40799271 135 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 49
D2Mit370 2 40799139 to 40799257 118 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 370
Tssr17580 2 40958329 to 40958335 6 + TSS region transcription start site region 17580
Gm13462 2 40958391 to 40959351 960 + pseudogene predicted gene 13462
D2Mit237 2 40995481 to 40995603 122 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 237
Gm13460 2 40998857 to 40999209 352 + pseudogene predicted gene 13460
Tssr23855 2 41081943 to 41081946 3 - TSS region transcription start site region 23855
D2Mit466 2 41225066 to 41225178 112 DNA segment DNA Segment, Chr 2 Massachusetts Institute of Technology 466
Gm30138 2 41292759 to 41340995 48236 + lncRNA gene predicted gene, 30138
D2Ucl4 2 41369511 to 41369723 212 DNA segment DNA segment, Chr 2, University College London 4
D2Dcr134 2 41384026 to 41384121 95 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 134
D2Mit371 2 41495188 to 41495306 118 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 371
D2Mit468 2 41551079 to 41551203 124 DNA segment DNA Segment, Chr 2 Massachusetts Institute of Technology 468
Gm13461 2 41987473 to 41988829 1356 - pseudogene predicted gene 13461
Tssr23856 2 41988849 to 41988871 22 - TSS region transcription start site region 23856
Tssr23857 2 42058842 to 42058848 6 - TSS region transcription start site region 23857
6430605C03Rik 2 42068452 to 42069903 1451 unclassified gene RIKEN cDNA 6430605C03 gene
Tssr23858 2 42079633 to 42079637 4 - TSS region transcription start site region 23858
Gm13463 2 42124621 to 42124853 232 + pseudogene predicted gene 13463
9030418E23Rik 2 42137840 to 42138762 922 unclassified gene RIKEN cDNA 9030418E23 gene
Tssr23859 2 42163592 to 42163600 8 - TSS region transcription start site region 23859
Tssr23860 2 42165285 to 42165293 8 - TSS region transcription start site region 23860
Tssr23861 2 42169871 to 42169883 12 - TSS region transcription start site region 23861
Tssr23862 2 42245066 to 42245071 5 - TSS region transcription start site region 23862
Tssr23863 2 42256628 to 42256632 4 - TSS region transcription start site region 23863
Tssr23864 2 42288926 to 42288928 2 - TSS region transcription start site region 23864
Mir6336 2 42447439 to 42447568 129 - miRNA gene microRNA 6336
Tssr17581 2 42530665 to 42530668 3 + TSS region transcription start site region 17581
D2Mit297 2 42605486 to 42605626 140 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 297
Tssr23865 2 42643823 to 42643827 4 - TSS region transcription start site region 23865
Cpgi11626 2 42652605 to 42653247 642 CpG island CpG island 11626
Tssr23866 2 42652843 to 42652854 11 - TSS region transcription start site region 23866
Tssr23867 2 42652973 to 42652996 23 - TSS region transcription start site region 23867
Tssr23868 2 42653002 to 42653028 26 - TSS region transcription start site region 23868
Tssr23869 2 42653029 to 42653050 21 - TSS region transcription start site region 23869
Tssr23870 2 42653062 to 42653077 15 - TSS region transcription start site region 23870
Tssr23871 2 42653293 to 42653302 9 - TSS region transcription start site region 23871
Tssr23872 2 42653317 to 42653329 12 - TSS region transcription start site region 23872
Gm24350 2 42809035 to 42809166 131 + snoRNA gene predicted gene, 24350
Tssr486 2 42823671 to 42823673 2 + TSS region transcription start site region 486
Gm39803 2 42872692 to 42918557 45865 + lncRNA gene predicted gene, 39803
D2Mit322 2 42907538 to 42907662 124 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 322
Gm30225 2 43128301 to 43131632 3331 + lncRNA gene predicted gene, 30225
Tssr17582 2 43128685 to 43128692 7 + TSS region transcription start site region 17582
Tssr17583 2 43128705 to 43128713 8 + TSS region transcription start site region 17583
Tssr17584 2 43128733 to 43128745 12 + TSS region transcription start site region 17584
Tssr17585 2 43128780 to 43128788 8 + TSS region transcription start site region 17585
Tssr17586 2 43183907 to 43183909 2 + TSS region transcription start site region 17586
Tssr17587 2 43195676 to 43195719 43 + TSS region transcription start site region 17587
Dntcs2 2 115079684 to 40995481 -74084203 QTL dental caries susceptibility 2