Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:39060687-39320746

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29 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Golga1 2 39016155 to 39065541 49386 - protein coding gene golgi autoantigen, golgin subfamily a, 1
Cpgi11621 2 39065048 to 39065883 835 CpG island CpG island 11621
Tssr23840 2 39065438 to 39065503 65 - TSS region transcription start site region 23840
Tssr23841 2 39065505 to 39065570 65 - TSS region transcription start site region 23841
Scai 2 39066214 to 39190730 124516 - protein coding gene suppressor of cancer cell invasion
Gm30067 2 39080119 to 39116581 36462 + lncRNA gene predicted gene, 30067
Tssr23842 2 39133087 to 39133090 3 - TSS region transcription start site region 23842
Gm18791 2 39153964 to 39154686 722 + pseudogene predicted gene, 18791
Gm16523 2 39157486 to 39162235 4749 - pseudogene predicted gene, 16523
D2Mit320 2 39159635 to 39159754 119 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 320
Gm44027 2 39178562 to 39182041 3479 - unclassified gene predicted gene, 44027
Tssr23843 2 39185551 to 39185554 3 - TSS region transcription start site region 23843
Cpgi11622 2 39190028 to 39191105 1077 CpG island CpG island 11622
Tssr23844 2 39190662 to 39190685 23 - TSS region transcription start site region 23844
Tssr23845 2 39190687 to 39190746 59 - TSS region transcription start site region 23845
Ppp6c 2 39194369 to 39226338 31969 - protein coding gene protein phosphatase 6, catalytic subunit
Tssr23846 2 39196552 to 39196573 21 - TSS region transcription start site region 23846
Tssr23847 2 39196864 to 39196880 16 - TSS region transcription start site region 23847
Gm13511 2 39216932 to 39217294 362 - pseudogene predicted gene 13511
Cpgi11623 2 39225735 to 39226531 796 CpG island CpG island 11623
Tssr23848 2 39226071 to 39226118 47 - TSS region transcription start site region 23848
Tssr23849 2 39226244 to 39226263 19 - TSS region transcription start site region 23849
Tssr23850 2 39226272 to 39226332 60 - TSS region transcription start site region 23850
Tssr23851 2 39226343 to 39226354 11 - TSS region transcription start site region 23851
Tssr23852 2 39226419 to 39226426 7 - TSS region transcription start site region 23852
Tssr23853 2 39226445 to 39226456 11 - TSS region transcription start site region 23853
Gm13504 2 39237126 to 39237441 315 - pseudogene predicted gene 13504
Vmn2r-ps2 2 39274106 to 39274870 764 + pseudogene vomeronasal 2, receptor, pseudogene 2
Tssr17577 2 39295980 to 39295984 4 + TSS region transcription start site region 17577