Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:38880558-39130563

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41 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Nr6a1 2 38723369 to 38926466 203097 - protein coding gene nuclear receptor subfamily 6, group A, member 1
Tssr17566 2 38880884 to 38880888 4 + TSS region transcription start site region 17566
Cpgi11616 2 38925226 to 38926560 1334 CpG island CpG island 11616
Tssr17567 2 38925490 to 38925497 7 + TSS region transcription start site region 17567
Tssr23832 2 38926338 to 38926354 16 - TSS region transcription start site region 23832
Tssr23833 2 38926359 to 38926386 27 - TSS region transcription start site region 23833
Tssr23834 2 38926396 to 38926454 58 - TSS region transcription start site region 23834
Cpgi11617 2 38931757 to 38932362 605 CpG island CpG island 11617
Tssr17568 2 38931931 to 38931948 17 + TSS region transcription start site region 17568
Tssr17569 2 38931952 to 38931959 7 + TSS region transcription start site region 17569
Tssr17570 2 38931975 to 38932007 32 + TSS region transcription start site region 17570
Olfml2a 2 38931980 to 38960585 28605 + protein coding gene olfactomedin-like 2A
Tssr17571 2 38932015 to 38932031 16 + TSS region transcription start site region 17571
Gm13473 2 38939343 to 38939929 586 + pseudogene predicted gene 13473
Gm13474 2 38973947 to 38976816 2869 + pseudogene predicted gene 13474
Gm39801 2 38979373 to 38981646 2273 + lncRNA gene predicted gene, 39801
Gm29985 2 38981829 to 38988596 6767 - lncRNA gene predicted gene, 29985
Gm13496 2 38996713 to 38998258 1545 - antisense lncRNA gene predicted gene 13496
Cpgi11618 2 38997928 to 38998355 427 CpG island CpG island 11618
Tssr17572 2 38998302 to 38998340 38 + TSS region transcription start site region 17572
Wdr38 2 38998309 to 39001588 3279 + protein coding gene WD repeat domain 38
Rpl35 2 39001581 to 39005131 3550 - protein coding gene ribosomal protein L35
Cpgi11619 2 39004514 to 39005684 1170 CpG island CpG island 11619
Tssr23835 2 39005126 to 39005145 19 - TSS region transcription start site region 23835
Tssr17573 2 39005230 to 39005277 47 + TSS region transcription start site region 17573
Tssr17574 2 39005301 to 39005319 18 + TSS region transcription start site region 17574
Tssr23836 2 39005558 to 39005563 5 - TSS region transcription start site region 23836
Tssr23837 2 39005574 to 39005625 51 - TSS region transcription start site region 23837
Arpc5l 2 39007567 to 39015878 8311 + protein coding gene actin related protein 2/3 complex, subunit 5-like
Cpgi11620 2 39007747 to 39008895 1148 CpG island CpG island 11620
Tssr23838 2 39007951 to 39007974 23 - TSS region transcription start site region 23838
Tssr23839 2 39007986 to 39008015 29 - TSS region transcription start site region 23839
Tssr17575 2 39008043 to 39008071 28 + TSS region transcription start site region 17575
Tssr17576 2 39008076 to 39008174 98 + TSS region transcription start site region 17576
Golga1 2 39016155 to 39065541 49386 - protein coding gene golgi autoantigen, golgin subfamily a, 1
Gm26127 2 39027777 to 39027883 106 + snRNA gene predicted gene, 26127
Cpgi11621 2 39065048 to 39065883 835 CpG island CpG island 11621
Tssr23840 2 39065438 to 39065503 65 - TSS region transcription start site region 23840
Tssr23841 2 39065505 to 39065570 65 - TSS region transcription start site region 23841
Scai 2 39066214 to 39190730 124516 - protein coding gene suppressor of cancer cell invasion
Gm30067 2 39080119 to 39116581 36462 + lncRNA gene predicted gene, 30067