Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:3876567-6126584

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240 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm13180 2 3855030 to 3877575 22545 + lincRNA gene predicted gene 13180
Orgwq2 2 3886089 to 93591306 89705217 QTL organ weight QTL 2
D2Mit1 2 3886089 to 3886211 122 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 1
Gm13191 2 3925808 to 3929139 3331 - lincRNA gene predicted gene 13191
D2Mit115 2 3928829 to 3928983 154 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 115
D2Mit231 2 3932099 to 3932248 149 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 231
Tssr390 2 4017685 to 4017696 11 + TSS region transcription start site region 390
Tssr15926 2 4017706 to 4017722 16 + TSS region transcription start site region 15926
Frmd4a 2 4017717 to 4614043 596326 + protein coding gene FERM domain containing 4A
Tssr15927 2 4017727 to 4017745 18 + TSS region transcription start site region 15927
Tssr15928 2 4017757 to 4017768 11 + TSS region transcription start site region 15928
Gm2639 2 4051263 to 4052559 1296 - pseudogene predicted gene 2639
Tssr15929 2 4057908 to 4057919 11 + TSS region transcription start site region 15929
Tssr15930 2 4058104 to 4058134 30 + TSS region transcription start site region 15930
Gm13188 2 4081855 to 4082418 563 - pseudogene predicted gene 13188
Gm10862 2 4091140 to 4094489 3349 + sense intronic lncRNA gene predicted gene 10862
Gm38085 2 4103877 to 4106938 3061 + sense intronic lncRNA gene predicted gene, 38085
Tssr15931 2 4131659 to 4131664 5 + TSS region transcription start site region 15931
1700080N15Rik 2 4132065 to 4141141 9076 - antisense lncRNA gene RIKEN cDNA 1700080N15 gene
Gm13189 2 4137774 to 4144102 6328 + lincRNA gene predicted gene 13189
Gm37814 2 4138984 to 4142627 3643 + sense intronic lncRNA gene predicted gene, 37814
Tssr22383 2 4141128 to 4141146 18 - TSS region transcription start site region 22383
Tssr15932 2 4141270 to 4141281 11 + TSS region transcription start site region 15932
Tssr15933 2 4152588 to 4152610 22 + TSS region transcription start site region 15933
Tssr15934 2 4152615 to 4152644 29 + TSS region transcription start site region 15934
Tssr15935 2 4165964 to 4165969 5 + TSS region transcription start site region 15935
Gm37107 2 4178110 to 4180661 2551 + sense intronic lncRNA gene predicted gene, 37107
Gm38348 2 4217081 to 4219353 2272 + sense intronic lncRNA gene predicted gene, 38348
Tssr15936 2 4218167 to 4218170 3 + TSS region transcription start site region 15936
Gm39752 2 4247426 to 4250592 3166 + lncRNA gene predicted gene, 39752
Tssr15937 2 4285236 to 4285253 17 + TSS region transcription start site region 15937
Gm13187 2 4289345 to 4301144 11799 - lncRNA gene predicted gene 13187
Tssr15938 2 4300462 to 4300522 60 + TSS region transcription start site region 15938
Tssr15939 2 4300537 to 4300568 31 + TSS region transcription start site region 15939
Tssr15940 2 4300590 to 4300599 9 + TSS region transcription start site region 15940
Tssr15941 2 4300604 to 4300617 13 + TSS region transcription start site region 15941
Tssr15942 2 4300623 to 4300635 12 + TSS region transcription start site region 15942
Tssr15943 2 4300727 to 4300741 14 + TSS region transcription start site region 15943
Tssr15944 2 4300749 to 4300765 16 + TSS region transcription start site region 15944
Tssr15945 2 4300773 to 4300797 24 + TSS region transcription start site region 15945
Tssr15946 2 4300877 to 4300904 27 + TSS region transcription start site region 15946
Tssr15947 2 4300908 to 4300931 23 + TSS region transcription start site region 15947
Gm36988 2 4316479 to 4318886 2407 + sense intronic lncRNA gene predicted gene, 36988
Gm23691 2 4380961 to 4381067 106 - snRNA gene predicted gene, 23691
Tssr15948 2 4389455 to 4389467 12 + TSS region transcription start site region 15948
Tssr15949 2 4389594 to 4389602 8 + TSS region transcription start site region 15949
Tssr15950 2 4389615 to 4389639 24 + TSS region transcription start site region 15950
Tssr15951 2 4399245 to 4399249 4 + TSS region transcription start site region 15951
Cpgi11156 2 4400785 to 4402037 1252 CpG island CpG island 11156
Tssr15952 2 4400798 to 4400828 30 + TSS region transcription start site region 15952
Tssr15953 2 4400958 to 4400969 11 + TSS region transcription start site region 15953
Tssr15954 2 4401096 to 4401120 24 + TSS region transcription start site region 15954
Tssr15955 2 4401160 to 4401172 12 + TSS region transcription start site region 15955
Tssr15956 2 4401291 to 4401332 41 + TSS region transcription start site region 15956
Tssr15957 2 4401393 to 4401500 107 + TSS region transcription start site region 15957
Tssr15958 2 4401505 to 4401524 19 + TSS region transcription start site region 15958
Tssr15959 2 4401539 to 4401556 17 + TSS region transcription start site region 15959
Tssr15960 2 4416287 to 4416319 32 + TSS region transcription start site region 15960
Tssr15961 2 4431946 to 4431997 51 + TSS region transcription start site region 15961
Gm13175 2 4458434 to 4466670 8236 - antisense lncRNA gene predicted gene 13175
D2Mit425 2 4459607 to 4459699 92 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology 425
Gm39751 2 4473223 to 4510570 37347 - lncRNA gene predicted gene, 39751
Cpgi11157 2 4559540 to 4560044 504 CpG island CpG island 11157
Tssr15962 2 4559602 to 4559629 27 + TSS region transcription start site region 15962
Tssr15963 2 4559645 to 4559656 11 + TSS region transcription start site region 15963
Tssr22384 2 4559671 to 4559694 23 - TSS region transcription start site region 22384
Tssr15964 2 4559701 to 4559706 5 + TSS region transcription start site region 15964
Tssr15965 2 4559742 to 4559755 13 + TSS region transcription start site region 15965
Tssr15966 2 4559759 to 4559810 51 + TSS region transcription start site region 15966
Tssr15967 2 4559878 to 4559892 14 + TSS region transcription start site region 15967
Tssr15968 2 4559913 to 4559930 17 + TSS region transcription start site region 15968
Tssr15969 2 4559931 to 4559943 12 + TSS region transcription start site region 15969
Tssr15970 2 4560050 to 4560063 13 + TSS region transcription start site region 15970
Tssr15971 2 4560118 to 4560148 30 + TSS region transcription start site region 15971
D2Mit426 2 4561924 to 4562098 174 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology 426
Gm13179 2 4586024 to 4587287 1263 - antisense lncRNA gene predicted gene 13179
Tssr22385 2 4593535 to 4593570 35 - TSS region transcription start site region 22385
Tssr15972 2 4597266 to 4597291 25 + TSS region transcription start site region 15972
D2Mit355 2 4598040 to 4598186 146 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 355
Cpgi11158 2 4603390 to 4604315 925 CpG island CpG island 11158
Prpf18 2 4622058 to 4652113 30055 - protein coding gene pre-mRNA processing factor 18
Cpgi11159 2 4651579 to 4652248 669 CpG island CpG island 11159
Tssr22386 2 4652060 to 4652077 17 - TSS region transcription start site region 22386
Tssr22387 2 4652087 to 4652140 53 - TSS region transcription start site region 22387
Tssr15973 2 4700221 to 4700232 11 + TSS region transcription start site region 15973
Gm13196 2 4700238 to 4700616 378 + pseudogene predicted gene 13196
D2Ertd623e 2 4704666 to 4704879 213 DNA segment DNA segment, Chr 2, ERATO Doi 623, expressed
Cpgi11160 2 4717285 to 4718673 1388 CpG island CpG island 11160
Tssr15974 2 4717825 to 4717893 68 + TSS region transcription start site region 15974
Bend7 2 4717831 to 4802142 84311 + protein coding gene BEN domain containing 7
Tssr15975 2 4718191 to 4718205 14 + TSS region transcription start site region 15975
Tssr15976 2 4739316 to 4739320 4 + TSS region transcription start site region 15976
Tssr391 2 4822621 to 4822629 8 + TSS region transcription start site region 391
Gm36389 2 4825247 to 4829501 4254 + lncRNA gene predicted gene, 36389
D2Mit76 2 4830770 to 4830908 138 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 76
Gm13176 2 4834136 to 4834612 476 - pseudogene predicted gene 13176
Cpgi11161 2 4881169 to 4882802 1633 CpG island CpG island 11161
Tssr15977 2 4881487 to 4881571 84 + TSS region transcription start site region 15977
Sephs1 2 4881564 to 4910557 28993 + protein coding gene selenophosphate synthetase 1
Tssr15978 2 4881756 to 4881772 16 + TSS region transcription start site region 15978
Tssr15979 2 4881798 to 4881836 38 + TSS region transcription start site region 15979
Tssr15980 2 4881849 to 4881860 11 + TSS region transcription start site region 15980
Tssr15981 2 4882204 to 4882252 48 + TSS region transcription start site region 15981
Tssr15982 2 4882271 to 4882293 22 + TSS region transcription start site region 15982
Tssr15983 2 4895874 to 4895880 6 + TSS region transcription start site region 15983
Gm46728 2 4910159 to 4916456 6297 - lncRNA gene predicted gene, 46728
Cpgi11162 2 4918825 to 4919282 457 CpG island CpG island 11162
Tssr15984 2 4918891 to 4918905 14 + TSS region transcription start site region 15984
Tssr15985 2 4919004 to 4919038 34 + TSS region transcription start site region 15985
Phyh 2 4919019 to 4938730 19711 + protein coding gene phytanoyl-CoA hydroxylase
Tssr15986 2 4919041 to 4919062 21 + TSS region transcription start site region 15986
Tssr15987 2 4922610 to 4922631 21 + TSS region transcription start site region 15987
Tssr15988 2 4922820 to 4922856 36 + TSS region transcription start site region 15988
Tssr15989 2 4925591 to 4925624 33 + TSS region transcription start site region 15989
Tssr15990 2 4927374 to 4927389 15 + TSS region transcription start site region 15990
Tssr15991 2 4927484 to 4927497 13 + TSS region transcription start site region 15991
Tssr15992 2 4928658 to 4928667 9 + TSS region transcription start site region 15992
Tssr15993 2 4930736 to 4930766 30 + TSS region transcription start site region 15993
Tssr15994 2 4935136 to 4935138 2 + TSS region transcription start site region 15994
Tssr15995 2 4935990 to 4936026 36 + TSS region transcription start site region 15995
Tssr22388 2 4936034 to 4936051 17 - TSS region transcription start site region 22388
Tssr15996 2 4936039 to 4936056 17 + TSS region transcription start site region 15996
Tssr22389 2 4938382 to 4938406 24 - TSS region transcription start site region 22389
Gm13194 2 4942174 to 4942484 310 + pseudogene predicted gene 13194
Gm13193 2 4956069 to 4956293 224 - pseudogene predicted gene 13193
Tssr22390 2 4956352 to 4956361 9 - TSS region transcription start site region 22390
Gm13192 2 4959545 to 4959752 207 - pseudogene predicted gene 13192
Tssr22391 2 4959774 to 4959778 4 - TSS region transcription start site region 22391
Tssr15997 2 4976113 to 4976164 51 + TSS region transcription start site region 15997
Ucma 2 4976122 to 4985748 9626 + protein coding gene upper zone of growth plate and cartilage matrix associated
Tssr15998 2 4976176 to 4976185 9 + TSS region transcription start site region 15998
D2Mit354 2 4984708 to 4984831 123 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 354
Heal15 2 4984708 to 4984831 123 QTL wound healing/regeneration 15
Mcm10 2 4989714 to 5012791 23077 - protein coding gene minichromosome maintenance 10 replication initiation factor
Tssr22392 2 4993261 to 4993300 39 - TSS region transcription start site region 22392
Tssr15999 2 4994469 to 4994474 5 + TSS region transcription start site region 15999
Tssr22393 2 5001567 to 5001584 17 - TSS region transcription start site region 22393
Cpgi11163 2 5012506 to 5012898 392 CpG island CpG island 11163
Tssr22394 2 5012716 to 5012766 50 - TSS region transcription start site region 22394
A930010G16Rik 2 5018445 to 5019805 1360 unclassified gene RIKEN cDNA A930010G16 gene
Optn 2 5020642 to 5064051 43409 - protein coding gene optineurin
D2Bwg1072e 2 5036296 to 5036513 217 DNA segment DNA segment, Chr 2, Brigham & Women's Genetics 1072 expressed
4930551O13Rik 2 5037280 to 5041133 3853 + antisense lncRNA gene RIKEN cDNA 4930551O13 gene
Tssr22395 2 5062944 to 5062954 10 - TSS region transcription start site region 22395
Cpgi11164 2 5063549 to 5064446 897 CpG island CpG island 11164
Tssr392 2 5063618 to 5063626 8 + TSS region transcription start site region 392
Tssr22396 2 5063932 to 5063971 39 - TSS region transcription start site region 22396
Tssr22397 2 5063975 to 5063986 11 - TSS region transcription start site region 22397
Tssr22398 2 5063996 to 5064048 52 - TSS region transcription start site region 22398
Tssr22399 2 5064052 to 5064075 23 - TSS region transcription start site region 22399
Tssr22400 2 5080567 to 5080573 6 - TSS region transcription start site region 22400
Tssr22401 2 5083816 to 5083827 11 - TSS region transcription start site region 22401
Tssr22402 2 5083839 to 5083852 13 - TSS region transcription start site region 22402
Tssr22403 2 5083863 to 5083872 9 - TSS region transcription start site region 22403
Cpgi11165 2 5098066 to 5098268 202 CpG island CpG island 11165
Gm39755 2 5101028 to 5103438 2410 - lncRNA gene predicted gene, 39755
Cpgi11166 2 5137393 to 5138395 1002 CpG island CpG island 11166
Tssr393 2 5137735 to 5137740 5 + TSS region transcription start site region 393
Gm26776 2 5137749 to 5230864 93115 - lincRNA gene predicted gene, 26776
Tssr16000 2 5137756 to 5137772 16 + TSS region transcription start site region 16000
Ccdc3 2 5137776 to 5230878 93102 + protein coding gene coiled-coil domain containing 3
Tssr16001 2 5137850 to 5137868 18 + TSS region transcription start site region 16001
Gm13198 2 5156555 to 5157107 552 + pseudogene predicted gene 13198
Gm46729 2 5215405 to 5220854 5449 + lncRNA gene predicted gene, 46729
Tssr16002 2 5230053 to 5230062 9 + TSS region transcription start site region 16002
Gm23118 2 5259929 to 5260115 186 - snRNA gene predicted gene, 23118
Gm13197 2 5283650 to 5283874 224 + pseudogene predicted gene 13197
Camk1d 2 5293457 to 5714515 421058 - protein coding gene calcium/calmodulin-dependent protein kinase ID
Tssr22404 2 5296201 to 5296214 13 - TSS region transcription start site region 22404
Tssr22405 2 5297326 to 5297342 16 - TSS region transcription start site region 22405
Tssr22406 2 5306489 to 5306493 4 - TSS region transcription start site region 22406
Gm36906 2 5313211 to 5317500 4289 + lncRNA gene predicted gene, 36906
Tssr22407 2 5339868 to 5339873 5 - TSS region transcription start site region 22407
Tssr22408 2 5379336 to 5379360 24 - TSS region transcription start site region 22408
Tssr394 2 5394172 to 5394173 1 + TSS region transcription start site region 394
Tssr22409 2 5410936 to 5410941 5 - TSS region transcription start site region 22409
Tssr16003 2 5413246 to 5413248 2 + TSS region transcription start site region 16003
Gm36853 2 5488130 to 5496496 8366 + lncRNA gene predicted gene, 36853
Tssr22410 2 5538681 to 5538716 35 - TSS region transcription start site region 22410
Tssr22411 2 5538731 to 5538744 13 - TSS region transcription start site region 22411
Tssr16004 2 5603551 to 5603565 14 + TSS region transcription start site region 16004
Gm13216 2 5603571 to 5604161 590 + pseudogene predicted gene 13216
Tssr22412 2 5657395 to 5657407 12 - TSS region transcription start site region 22412
Tssr22413 2 5670286 to 5670307 21 - TSS region transcription start site region 22413
Tssr22414 2 5671515 to 5671520 5 - TSS region transcription start site region 22414
Tssr22415 2 5672967 to 5672969 2 - TSS region transcription start site region 22415
Tssr22416 2 5675991 to 5676025 34 - TSS region transcription start site region 22416
Tssr22417 2 5676062 to 5676065 3 - TSS region transcription start site region 22417
Tssr22418 2 5676955 to 5676969 14 - TSS region transcription start site region 22418
Tssr22419 2 5676983 to 5676993 10 - TSS region transcription start site region 22419
Tssr22420 2 5677533 to 5677545 12 - TSS region transcription start site region 22420
Tssr22421 2 5682032 to 5682037 5 - TSS region transcription start site region 22421
Tssr16005 2 5683715 to 5683718 3 + TSS region transcription start site region 16005
Tssr22422 2 5697881 to 5697899 18 - TSS region transcription start site region 22422
Tssr22423 2 5698012 to 5698020 8 - TSS region transcription start site region 22423
Cpgi11167 2 5713678 to 5715321 1643 CpG island CpG island 11167
Tssr22424 2 5714341 to 5714402 61 - TSS region transcription start site region 22424
Tssr22425 2 5714435 to 5714446 11 - TSS region transcription start site region 22425
Tssr22426 2 5714463 to 5714487 24 - TSS region transcription start site region 22426
Tssr22427 2 5714490 to 5714538 48 - TSS region transcription start site region 22427