Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:38693257-38982370

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37 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Nr5a1 2 38692656 to 38714542 21886 - protein coding gene nuclear receptor subfamily 5, group A, member 1
Tssr23825 2 38708358 to 38708403 45 - TSS region transcription start site region 23825
Cpgi11615 2 38710171 to 38712657 2486 CpG island CpG island 11615
Tssr23826 2 38712195 to 38712210 15 - TSS region transcription start site region 23826
Nr5a1os 2 38712676 to 38720638 7962 + antisense lncRNA gene nuclear receptor subfamily 5, group A, member 1, opposite strand
Tssr23827 2 38712836 to 38712861 25 - TSS region transcription start site region 23827
Tssr23828 2 38714491 to 38714514 23 - TSS region transcription start site region 23828
Nr6a1 2 38723369 to 38926466 203097 - protein coding gene nuclear receptor subfamily 6, group A, member 1
Tssr23829 2 38727193 to 38727241 48 - TSS region transcription start site region 23829
Gm44146 2 38757871 to 38758686 815 - unclassified gene predicted gene, 44146
Rpl15-ps4 2 38777736 to 38778341 605 + pseudogene ribosomal protein L15, pseudogene 4
Tssr23830 2 38797171 to 38797176 5 - TSS region transcription start site region 23830
Tssr17564 2 38823229 to 38823272 43 + TSS region transcription start site region 17564
Nr6a1os 2 38823257 to 38852370 29113 + antisense lncRNA gene nuclear receptor subfamily 6, group A, member 1, opposite strand
Tssr17565 2 38823337 to 38823350 13 + TSS region transcription start site region 17565
Mir181a-2 2 38852735 to 38852810 75 + miRNA gene microRNA 181a-2
Mirc15 2 38852735 to 38853918 1183 complex/cluster/region microRNA cluster 15, including Mir181a-2 through Mir181b-2
Gm44144 2 38852978 to 38854937 1959 - unclassified gene predicted gene, 44144
Mir181b-2 2 38853830 to 38853918 88 + miRNA gene microRNA 181b-2
Tssr23831 2 38854919 to 38854922 3 - TSS region transcription start site region 23831
5730507A11Rik 2 38862163 to 38865533 3370 + unclassified gene RIKEN cDNA 5730507A11 gene
Tssr17566 2 38880884 to 38880888 4 + TSS region transcription start site region 17566
Cpgi11616 2 38925226 to 38926560 1334 CpG island CpG island 11616
Tssr17567 2 38925490 to 38925497 7 + TSS region transcription start site region 17567
Tssr23832 2 38926338 to 38926354 16 - TSS region transcription start site region 23832
Tssr23833 2 38926359 to 38926386 27 - TSS region transcription start site region 23833
Tssr23834 2 38926396 to 38926454 58 - TSS region transcription start site region 23834
Cpgi11617 2 38931757 to 38932362 605 CpG island CpG island 11617
Tssr17568 2 38931931 to 38931948 17 + TSS region transcription start site region 17568
Tssr17569 2 38931952 to 38931959 7 + TSS region transcription start site region 17569
Tssr17570 2 38931975 to 38932007 32 + TSS region transcription start site region 17570
Olfml2a 2 38931980 to 38960585 28605 + protein coding gene olfactomedin-like 2A
Tssr17571 2 38932015 to 38932031 16 + TSS region transcription start site region 17571
Gm13473 2 38939343 to 38939929 586 + pseudogene predicted gene 13473
Gm13474 2 38973947 to 38976816 2869 + pseudogene predicted gene 13474
Gm39801 2 38979373 to 38981646 2273 + lncRNA gene predicted gene, 39801
Gm29985 2 38981829 to 38988596 6767 - lncRNA gene predicted gene, 29985