Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:38688562-39672041

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93 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi11614 2 38688991 to 38689349 358 CpG island CpG island 11614
Nr5a1 2 38692656 to 38714542 21886 - protein coding gene nuclear receptor subfamily 5, group A, member 1
Tssr23825 2 38708358 to 38708403 45 - TSS region transcription start site region 23825
Cpgi11615 2 38710171 to 38712657 2486 CpG island CpG island 11615
Tssr23826 2 38712195 to 38712210 15 - TSS region transcription start site region 23826
Nr5a1os 2 38712676 to 38720638 7962 + antisense lncRNA gene nuclear receptor subfamily 5, group A, member 1, opposite strand
Tssr23827 2 38712836 to 38712861 25 - TSS region transcription start site region 23827
Tssr23828 2 38714491 to 38714514 23 - TSS region transcription start site region 23828
Nr6a1 2 38723369 to 38926466 203097 - protein coding gene nuclear receptor subfamily 6, group A, member 1
Tssr23829 2 38727193 to 38727241 48 - TSS region transcription start site region 23829
Gm44146 2 38757871 to 38758686 815 - unclassified gene predicted gene, 44146
Rpl15-ps4 2 38777736 to 38778341 605 + pseudogene ribosomal protein L15, pseudogene 4
Tssr23830 2 38797171 to 38797176 5 - TSS region transcription start site region 23830
Tssr17564 2 38823229 to 38823272 43 + TSS region transcription start site region 17564
Nr6a1os 2 38823257 to 38852370 29113 + antisense lncRNA gene nuclear receptor subfamily 6, group A, member 1, opposite strand
Tssr17565 2 38823337 to 38823350 13 + TSS region transcription start site region 17565
Mir181a-2 2 38852735 to 38852810 75 + miRNA gene microRNA 181a-2
Mirc15 2 38852735 to 38853918 1183 complex/cluster/region microRNA cluster 15, including Mir181a-2 through Mir181b-2
Gm44144 2 38852978 to 38854937 1959 - unclassified gene predicted gene, 44144
Mir181b-2 2 38853830 to 38853918 88 + miRNA gene microRNA 181b-2
Tssr23831 2 38854919 to 38854922 3 - TSS region transcription start site region 23831
5730507A11Rik 2 38862163 to 38865533 3370 + unclassified gene RIKEN cDNA 5730507A11 gene
Tssr17566 2 38880884 to 38880888 4 + TSS region transcription start site region 17566
Cpgi11616 2 38925226 to 38926560 1334 CpG island CpG island 11616
Tssr17567 2 38925490 to 38925497 7 + TSS region transcription start site region 17567
Tssr23832 2 38926338 to 38926354 16 - TSS region transcription start site region 23832
Tssr23833 2 38926359 to 38926386 27 - TSS region transcription start site region 23833
Tssr23834 2 38926396 to 38926454 58 - TSS region transcription start site region 23834
Cpgi11617 2 38931757 to 38932362 605 CpG island CpG island 11617
Tssr17568 2 38931931 to 38931948 17 + TSS region transcription start site region 17568
Tssr17569 2 38931952 to 38931959 7 + TSS region transcription start site region 17569
Tssr17570 2 38931975 to 38932007 32 + TSS region transcription start site region 17570
Olfml2a 2 38931980 to 38960585 28605 + protein coding gene olfactomedin-like 2A
Tssr17571 2 38932015 to 38932031 16 + TSS region transcription start site region 17571
Gm13473 2 38939343 to 38939929 586 + pseudogene predicted gene 13473
Gm13474 2 38973947 to 38976816 2869 + pseudogene predicted gene 13474
Gm39801 2 38979373 to 38981646 2273 + lncRNA gene predicted gene, 39801
Gm29985 2 38981829 to 38988596 6767 - lncRNA gene predicted gene, 29985
Gm13496 2 38996713 to 38998258 1545 - antisense lncRNA gene predicted gene 13496
Cpgi11618 2 38997928 to 38998355 427 CpG island CpG island 11618
Tssr17572 2 38998302 to 38998340 38 + TSS region transcription start site region 17572
Wdr38 2 38998309 to 39001588 3279 + protein coding gene WD repeat domain 38
Rpl35 2 39001581 to 39005131 3550 - protein coding gene ribosomal protein L35
Cpgi11619 2 39004514 to 39005684 1170 CpG island CpG island 11619
Tssr23835 2 39005126 to 39005145 19 - TSS region transcription start site region 23835
Tssr17573 2 39005230 to 39005277 47 + TSS region transcription start site region 17573
Tssr17574 2 39005301 to 39005319 18 + TSS region transcription start site region 17574
Tssr23836 2 39005558 to 39005563 5 - TSS region transcription start site region 23836
Tssr23837 2 39005574 to 39005625 51 - TSS region transcription start site region 23837
Arpc5l 2 39007567 to 39015878 8311 + protein coding gene actin related protein 2/3 complex, subunit 5-like
Cpgi11620 2 39007747 to 39008895 1148 CpG island CpG island 11620
Tssr23838 2 39007951 to 39007974 23 - TSS region transcription start site region 23838
Tssr23839 2 39007986 to 39008015 29 - TSS region transcription start site region 23839
Tssr17575 2 39008043 to 39008071 28 + TSS region transcription start site region 17575
Tssr17576 2 39008076 to 39008174 98 + TSS region transcription start site region 17576
Golga1 2 39016155 to 39065541 49386 - protein coding gene golgi autoantigen, golgin subfamily a, 1
Gm26127 2 39027777 to 39027883 106 + snRNA gene predicted gene, 26127
Cpgi11621 2 39065048 to 39065883 835 CpG island CpG island 11621
Tssr23840 2 39065438 to 39065503 65 - TSS region transcription start site region 23840
Tssr23841 2 39065505 to 39065570 65 - TSS region transcription start site region 23841
Scai 2 39066214 to 39190730 124516 - protein coding gene suppressor of cancer cell invasion
Gm30067 2 39080119 to 39116581 36462 + lncRNA gene predicted gene, 30067
Tssr23842 2 39133087 to 39133090 3 - TSS region transcription start site region 23842
Gm18791 2 39153964 to 39154686 722 + pseudogene predicted gene, 18791
Gm16523 2 39157486 to 39162235 4749 - pseudogene predicted gene, 16523
D2Mit320 2 39159635 to 39159754 119 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 320
Gm44027 2 39178562 to 39182041 3479 - unclassified gene predicted gene, 44027
Tssr23843 2 39185551 to 39185554 3 - TSS region transcription start site region 23843
Cpgi11622 2 39190028 to 39191105 1077 CpG island CpG island 11622
Tssr23844 2 39190662 to 39190685 23 - TSS region transcription start site region 23844
Tssr23845 2 39190687 to 39190746 59 - TSS region transcription start site region 23845
Ppp6c 2 39194369 to 39226338 31969 - protein coding gene protein phosphatase 6, catalytic subunit
Tssr23846 2 39196552 to 39196573 21 - TSS region transcription start site region 23846
Tssr23847 2 39196864 to 39196880 16 - TSS region transcription start site region 23847
Gm13511 2 39216932 to 39217294 362 - pseudogene predicted gene 13511
Cpgi11623 2 39225735 to 39226531 796 CpG island CpG island 11623
Tssr23848 2 39226071 to 39226118 47 - TSS region transcription start site region 23848
Tssr23849 2 39226244 to 39226263 19 - TSS region transcription start site region 23849
Tssr23850 2 39226272 to 39226332 60 - TSS region transcription start site region 23850
Tssr23851 2 39226343 to 39226354 11 - TSS region transcription start site region 23851
Tssr23852 2 39226419 to 39226426 7 - TSS region transcription start site region 23852
Tssr23853 2 39226445 to 39226456 11 - TSS region transcription start site region 23853
Gm13504 2 39237126 to 39237441 315 - pseudogene predicted gene 13504
Vmn2r-ps2 2 39274106 to 39274870 764 + pseudogene vomeronasal 2, receptor, pseudogene 2
Tssr17577 2 39295980 to 39295984 4 + TSS region transcription start site region 17577
Gm13506 2 39395413 to 39399730 4317 + pseudogene predicted gene 13506
Cpgi11624 2 39420721 to 39421077 356 CpG island CpG island 11624
Tssr23854 2 39421123 to 39421144 21 - TSS region transcription start site region 23854
D2Mit368 2 39481586 to 39481684 98 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 368
Gm13454 2 39524873 to 39525355 482 - pseudogene predicted gene 13454
Gm13451 2 39558157 to 39558733 576 - pseudogene predicted gene 13451
Gm13452 2 39574630 to 39575590 960 + pseudogene predicted gene 13452
Gm43944 2 39658852 to 39658971 119 - pseudogene predicted gene, 43944