Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:38354002-38525851

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36 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lhx2 2 38339281 to 38369733 30452 + protein coding gene LIM homeobox protein 2
Cpgi11605 2 38354485 to 38355362 877 CpG island CpG island 11605
Tssr17541 2 38354749 to 38354764 15 + TSS region transcription start site region 17541
Tssr17542 2 38354794 to 38354804 10 + TSS region transcription start site region 17542
Cpgi11606 2 38356378 to 38357183 805 CpG island CpG island 11606
Gm13584 2 38359580 to 38363980 4400 - antisense lncRNA gene predicted gene 13584
Cpgi11607 2 38368786 to 38369133 347 CpG island CpG island 11607
Tssr23809 2 38368958 to 38369004 46 - TSS region transcription start site region 23809
Tssr23810 2 38369013 to 38369024 11 - TSS region transcription start site region 23810
Tssr17543 2 38369096 to 38369107 11 + TSS region transcription start site region 17543
Cpgi11608 2 38375960 to 38376263 303 CpG island CpG island 11608
Cpgi11609 2 38379200 to 38379561 361 CpG island CpG island 11609
Gm13589 2 38424002 to 38455851 31849 + lincRNA gene predicted gene 13589
Tssr17544 2 38432531 to 38432534 3 + TSS region transcription start site region 17544
Gm39799 2 38468277 to 38502499 34222 - lncRNA gene predicted gene, 39799
Tssr17545 2 38472152 to 38472169 17 + TSS region transcription start site region 17545
Tssr17546 2 38472194 to 38472208 14 + TSS region transcription start site region 17546
Tssr17547 2 38473124 to 38473136 12 + TSS region transcription start site region 17547
Gm25081 2 38480338 to 38480445 107 + snRNA gene predicted gene, 25081
Tssr17548 2 38481371 to 38481386 15 + TSS region transcription start site region 17548
Tssr23811 2 38484666 to 38484707 41 - TSS region transcription start site region 23811
Tssr17549 2 38490022 to 38490025 3 + TSS region transcription start site region 17549
Gm13588 2 38490104 to 38490238 134 + pseudogene predicted gene 13588
Tssr485 2 38500004 to 38500006 2 + TSS region transcription start site region 485
Gm44062 2 38500192 to 38505048 4856 + unclassified gene predicted gene, 44062
Cpgi11610 2 38511323 to 38512455 1132 CpG island CpG island 11610
Tssr17550 2 38511491 to 38511523 32 + TSS region transcription start site region 17550
Tssr17551 2 38511547 to 38511551 4 + TSS region transcription start site region 17551
Tssr23812 2 38511549 to 38511558 9 - TSS region transcription start site region 23812
Tssr17552 2 38511670 to 38511747 77 + TSS region transcription start site region 17552
Nek6 2 38511697 to 38587490 75793 + protein coding gene NIMA (never in mitosis gene a)-related expressed kinase 6
Tssr17553 2 38511873 to 38511884 11 + TSS region transcription start site region 17553
Tssr17554 2 38513240 to 38513250 10 + TSS region transcription start site region 17554
Tssr17555 2 38517357 to 38517385 28 + TSS region transcription start site region 17555
Gm46737 2 38519683 to 38524922 5239 + lncRNA gene predicted gene, 46737
Tssr17556 2 38522324 to 38522339 15 + TSS region transcription start site region 17556