Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:38353758-38873767

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88 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lhx2 2 38339281 to 38369733 30452 + protein coding gene LIM homeobox protein 2
Cpgi11605 2 38354485 to 38355362 877 CpG island CpG island 11605
Tssr17541 2 38354749 to 38354764 15 + TSS region transcription start site region 17541
Tssr17542 2 38354794 to 38354804 10 + TSS region transcription start site region 17542
Cpgi11606 2 38356378 to 38357183 805 CpG island CpG island 11606
Gm13584 2 38359580 to 38363980 4400 - antisense lncRNA gene predicted gene 13584
Cpgi11607 2 38368786 to 38369133 347 CpG island CpG island 11607
Tssr23809 2 38368958 to 38369004 46 - TSS region transcription start site region 23809
Tssr23810 2 38369013 to 38369024 11 - TSS region transcription start site region 23810
Tssr17543 2 38369096 to 38369107 11 + TSS region transcription start site region 17543
Cpgi11608 2 38375960 to 38376263 303 CpG island CpG island 11608
Cpgi11609 2 38379200 to 38379561 361 CpG island CpG island 11609
Gm13589 2 38424002 to 38455851 31849 + lincRNA gene predicted gene 13589
Tssr17544 2 38432531 to 38432534 3 + TSS region transcription start site region 17544
Gm39799 2 38468277 to 38502499 34222 - lncRNA gene predicted gene, 39799
Tssr17545 2 38472152 to 38472169 17 + TSS region transcription start site region 17545
Tssr17546 2 38472194 to 38472208 14 + TSS region transcription start site region 17546
Tssr17547 2 38473124 to 38473136 12 + TSS region transcription start site region 17547
Gm25081 2 38480338 to 38480445 107 + snRNA gene predicted gene, 25081
Tssr17548 2 38481371 to 38481386 15 + TSS region transcription start site region 17548
Tssr23811 2 38484666 to 38484707 41 - TSS region transcription start site region 23811
Tssr17549 2 38490022 to 38490025 3 + TSS region transcription start site region 17549
Gm13588 2 38490104 to 38490238 134 + pseudogene predicted gene 13588
Tssr485 2 38500004 to 38500006 2 + TSS region transcription start site region 485
Gm44062 2 38500192 to 38505048 4856 + unclassified gene predicted gene, 44062
Cpgi11610 2 38511323 to 38512455 1132 CpG island CpG island 11610
Tssr17550 2 38511491 to 38511523 32 + TSS region transcription start site region 17550
Tssr17551 2 38511547 to 38511551 4 + TSS region transcription start site region 17551
Tssr23812 2 38511549 to 38511558 9 - TSS region transcription start site region 23812
Tssr17552 2 38511670 to 38511747 77 + TSS region transcription start site region 17552
Nek6 2 38511697 to 38587490 75793 + protein coding gene NIMA (never in mitosis gene a)-related expressed kinase 6
Tssr17553 2 38511873 to 38511884 11 + TSS region transcription start site region 17553
Tssr17554 2 38513240 to 38513250 10 + TSS region transcription start site region 17554
Tssr17555 2 38517357 to 38517385 28 + TSS region transcription start site region 17555
Gm46737 2 38519683 to 38524922 5239 + lncRNA gene predicted gene, 46737
Tssr17556 2 38522324 to 38522339 15 + TSS region transcription start site region 17556
Gm35808 2 38532817 to 38534926 2109 - lncRNA gene predicted gene, 35808
Tssr17557 2 38533689 to 38533695 6 + TSS region transcription start site region 17557
Tssr17558 2 38533802 to 38533803 1 + TSS region transcription start site region 17558
Tssr17559 2 38536127 to 38536144 17 + TSS region transcription start site region 17559
Tssr23813 2 38536291 to 38536334 43 - TSS region transcription start site region 23813
Tssr17560 2 38536605 to 38536616 11 + TSS region transcription start site region 17560
Tssr17561 2 38536864 to 38536867 3 + TSS region transcription start site region 17561
Gm44183 2 38564727 to 38566354 1627 - unclassified gene predicted gene, 44183
Tssr17562 2 38586078 to 38586089 11 + TSS region transcription start site region 17562
Tssr17563 2 38587909 to 38587913 4 + TSS region transcription start site region 17563
Psmb7 2 38588046 to 38643952 55906 - protein coding gene proteasome (prosome, macropain) subunit, beta type 7
Tssr23814 2 38613674 to 38613685 11 - TSS region transcription start site region 23814
Tssr23815 2 38613695 to 38613706 11 - TSS region transcription start site region 23815
Tssr23816 2 38613709 to 38613720 11 - TSS region transcription start site region 23816
Tssr23817 2 38613727 to 38613750 23 - TSS region transcription start site region 23817
Tssr23818 2 38613758 to 38613767 9 - TSS region transcription start site region 23818
Tssr23819 2 38619365 to 38619371 6 - TSS region transcription start site region 23819
Gm13586 2 38622801 to 38623264 463 + pseudogene predicted gene 13586
Tssr23820 2 38623373 to 38623376 3 - TSS region transcription start site region 23820
Tssr23821 2 38623545 to 38623610 65 - TSS region transcription start site region 23821
Tssr23822 2 38623914 to 38623918 4 - TSS region transcription start site region 23822
Gm27634 2 38637018 to 38637143 125 - miRNA gene predicted gene, 27634
Cpgi11611 2 38643346 to 38644109 763 CpG island CpG island 11611
Tssr23823 2 38643405 to 38643420 15 - TSS region transcription start site region 23823
Tssr23824 2 38643905 to 38643927 22 - TSS region transcription start site region 23824
Cpgi11612 2 38658467 to 38658752 285 CpG island CpG island 11612
Gm36744 2 38669475 to 38670922 1447 - lncRNA gene predicted gene, 36744
Adgrd2-ps 2 38671158 to 38687651 16493 + pseudogene adhesion G protein-coupled receptor D2, pseudogene
Cpgi11613 2 38671943 to 38672577 634 CpG island CpG island 11613
Gm13587 2 38672537 to 38676552 4015 + unclassified non-coding RNA gene predicted gene 13587
Cpgi11614 2 38688991 to 38689349 358 CpG island CpG island 11614
Nr5a1 2 38692656 to 38714542 21886 - protein coding gene nuclear receptor subfamily 5, group A, member 1
Tssr23825 2 38708358 to 38708403 45 - TSS region transcription start site region 23825
Cpgi11615 2 38710171 to 38712657 2486 CpG island CpG island 11615
Tssr23826 2 38712195 to 38712210 15 - TSS region transcription start site region 23826
Nr5a1os 2 38712676 to 38720638 7962 + antisense lncRNA gene nuclear receptor subfamily 5, group A, member 1, opposite strand
Tssr23827 2 38712836 to 38712861 25 - TSS region transcription start site region 23827
Tssr23828 2 38714491 to 38714514 23 - TSS region transcription start site region 23828
Nr6a1 2 38723369 to 38926466 203097 - protein coding gene nuclear receptor subfamily 6, group A, member 1
Tssr23829 2 38727193 to 38727241 48 - TSS region transcription start site region 23829
Gm44146 2 38757871 to 38758686 815 - unclassified gene predicted gene, 44146
Rpl15-ps4 2 38777736 to 38778341 605 + pseudogene ribosomal protein L15, pseudogene 4
Tssr23830 2 38797171 to 38797176 5 - TSS region transcription start site region 23830
Tssr17564 2 38823229 to 38823272 43 + TSS region transcription start site region 17564
Nr6a1os 2 38823257 to 38852370 29113 + antisense lncRNA gene nuclear receptor subfamily 6, group A, member 1, opposite strand
Tssr17565 2 38823337 to 38823350 13 + TSS region transcription start site region 17565
Mir181a-2 2 38852735 to 38852810 75 + miRNA gene microRNA 181a-2
Mirc15 2 38852735 to 38853918 1183 complex/cluster/region microRNA cluster 15, including Mir181a-2 through Mir181b-2
Gm44144 2 38852978 to 38854937 1959 - unclassified gene predicted gene, 44144
Mir181b-2 2 38853830 to 38853918 88 + miRNA gene microRNA 181b-2
Tssr23831 2 38854919 to 38854922 3 - TSS region transcription start site region 23831
5730507A11Rik 2 38862163 to 38865533 3370 + unclassified gene RIKEN cDNA 5730507A11 gene