Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:38294343-39584929

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170 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm46736 2 38335271 to 38339227 3956 - lncRNA gene predicted gene, 46736
Cpgi11602 2 38338617 to 38339962 1345 CpG island CpG island 11602
Tssr17535 2 38339258 to 38339278 20 + TSS region transcription start site region 17535
Lhx2 2 38339281 to 38369733 30452 + protein coding gene LIM homeobox protein 2
Tssr17536 2 38341068 to 38341080 12 + TSS region transcription start site region 17536
Gm27197 2 38347357 to 38348316 959 - antisense lncRNA gene predicted gene 27197
Cpgi11603 2 38347732 to 38349001 1269 CpG island CpG island 11603
Cpgi11604 2 38350469 to 38352639 2170 CpG island CpG island 11604
Tssr17537 2 38351060 to 38351080 20 + TSS region transcription start site region 17537
Tssr17538 2 38351205 to 38351214 9 + TSS region transcription start site region 17538
Tssr17539 2 38351224 to 38351246 22 + TSS region transcription start site region 17539
Tssr484 2 38351496 to 38351515 19 + TSS region transcription start site region 484
Tssr17540 2 38351680 to 38351690 10 + TSS region transcription start site region 17540
Cpgi11605 2 38354485 to 38355362 877 CpG island CpG island 11605
Tssr17541 2 38354749 to 38354764 15 + TSS region transcription start site region 17541
Tssr17542 2 38354794 to 38354804 10 + TSS region transcription start site region 17542
Cpgi11606 2 38356378 to 38357183 805 CpG island CpG island 11606
Gm13584 2 38359580 to 38363980 4400 - antisense lncRNA gene predicted gene 13584
Cpgi11607 2 38368786 to 38369133 347 CpG island CpG island 11607
Tssr23809 2 38368958 to 38369004 46 - TSS region transcription start site region 23809
Tssr23810 2 38369013 to 38369024 11 - TSS region transcription start site region 23810
Tssr17543 2 38369096 to 38369107 11 + TSS region transcription start site region 17543
Cpgi11608 2 38375960 to 38376263 303 CpG island CpG island 11608
Cpgi11609 2 38379200 to 38379561 361 CpG island CpG island 11609
Gm13589 2 38424002 to 38455851 31849 + lincRNA gene predicted gene 13589
Tssr17544 2 38432531 to 38432534 3 + TSS region transcription start site region 17544
Gm39799 2 38468277 to 38502499 34222 - lncRNA gene predicted gene, 39799
Tssr17545 2 38472152 to 38472169 17 + TSS region transcription start site region 17545
Tssr17546 2 38472194 to 38472208 14 + TSS region transcription start site region 17546
Tssr17547 2 38473124 to 38473136 12 + TSS region transcription start site region 17547
Gm25081 2 38480338 to 38480445 107 + snRNA gene predicted gene, 25081
Tssr17548 2 38481371 to 38481386 15 + TSS region transcription start site region 17548
Tssr23811 2 38484666 to 38484707 41 - TSS region transcription start site region 23811
Tssr17549 2 38490022 to 38490025 3 + TSS region transcription start site region 17549
Gm13588 2 38490104 to 38490238 134 + pseudogene predicted gene 13588
Tssr485 2 38500004 to 38500006 2 + TSS region transcription start site region 485
Gm44062 2 38500192 to 38505048 4856 + unclassified gene predicted gene, 44062
Cpgi11610 2 38511323 to 38512455 1132 CpG island CpG island 11610
Tssr17550 2 38511491 to 38511523 32 + TSS region transcription start site region 17550
Tssr17551 2 38511547 to 38511551 4 + TSS region transcription start site region 17551
Tssr23812 2 38511549 to 38511558 9 - TSS region transcription start site region 23812
Tssr17552 2 38511670 to 38511747 77 + TSS region transcription start site region 17552
Nek6 2 38511697 to 38587490 75793 + protein coding gene NIMA (never in mitosis gene a)-related expressed kinase 6
Tssr17553 2 38511873 to 38511884 11 + TSS region transcription start site region 17553
Tssr17554 2 38513240 to 38513250 10 + TSS region transcription start site region 17554
Tssr17555 2 38517357 to 38517385 28 + TSS region transcription start site region 17555
Gm46737 2 38519683 to 38524922 5239 + lncRNA gene predicted gene, 46737
Tssr17556 2 38522324 to 38522339 15 + TSS region transcription start site region 17556
Gm35808 2 38532817 to 38534926 2109 - lncRNA gene predicted gene, 35808
Tssr17557 2 38533689 to 38533695 6 + TSS region transcription start site region 17557
Tssr17558 2 38533802 to 38533803 1 + TSS region transcription start site region 17558
Tssr17559 2 38536127 to 38536144 17 + TSS region transcription start site region 17559
Tssr23813 2 38536291 to 38536334 43 - TSS region transcription start site region 23813
Tssr17560 2 38536605 to 38536616 11 + TSS region transcription start site region 17560
Tssr17561 2 38536864 to 38536867 3 + TSS region transcription start site region 17561
Gm44183 2 38564727 to 38566354 1627 - unclassified gene predicted gene, 44183
Tssr17562 2 38586078 to 38586089 11 + TSS region transcription start site region 17562
Tssr17563 2 38587909 to 38587913 4 + TSS region transcription start site region 17563
Psmb7 2 38588046 to 38643952 55906 - protein coding gene proteasome (prosome, macropain) subunit, beta type 7
Tssr23814 2 38613674 to 38613685 11 - TSS region transcription start site region 23814
Tssr23815 2 38613695 to 38613706 11 - TSS region transcription start site region 23815
Tssr23816 2 38613709 to 38613720 11 - TSS region transcription start site region 23816
Tssr23817 2 38613727 to 38613750 23 - TSS region transcription start site region 23817
Tssr23818 2 38613758 to 38613767 9 - TSS region transcription start site region 23818
Tssr23819 2 38619365 to 38619371 6 - TSS region transcription start site region 23819
Gm13586 2 38622801 to 38623264 463 + pseudogene predicted gene 13586
Tssr23820 2 38623373 to 38623376 3 - TSS region transcription start site region 23820
Tssr23821 2 38623545 to 38623610 65 - TSS region transcription start site region 23821
Tssr23822 2 38623914 to 38623918 4 - TSS region transcription start site region 23822
Gm27634 2 38637018 to 38637143 125 - miRNA gene predicted gene, 27634
Cpgi11611 2 38643346 to 38644109 763 CpG island CpG island 11611
Tssr23823 2 38643405 to 38643420 15 - TSS region transcription start site region 23823
Tssr23824 2 38643905 to 38643927 22 - TSS region transcription start site region 23824
Cpgi11612 2 38658467 to 38658752 285 CpG island CpG island 11612
Gm36744 2 38669475 to 38670922 1447 - lncRNA gene predicted gene, 36744
Adgrd2-ps 2 38671158 to 38687651 16493 + pseudogene adhesion G protein-coupled receptor D2, pseudogene
Cpgi11613 2 38671943 to 38672577 634 CpG island CpG island 11613
Gm13587 2 38672537 to 38676552 4015 + unclassified non-coding RNA gene predicted gene 13587
Cpgi11614 2 38688991 to 38689349 358 CpG island CpG island 11614
Nr5a1 2 38692656 to 38714542 21886 - protein coding gene nuclear receptor subfamily 5, group A, member 1
Tssr23825 2 38708358 to 38708403 45 - TSS region transcription start site region 23825
Cpgi11615 2 38710171 to 38712657 2486 CpG island CpG island 11615
Tssr23826 2 38712195 to 38712210 15 - TSS region transcription start site region 23826
Nr5a1os 2 38712676 to 38720638 7962 + antisense lncRNA gene nuclear receptor subfamily 5, group A, member 1, opposite strand
Tssr23827 2 38712836 to 38712861 25 - TSS region transcription start site region 23827
Tssr23828 2 38714491 to 38714514 23 - TSS region transcription start site region 23828
Nr6a1 2 38723369 to 38926466 203097 - protein coding gene nuclear receptor subfamily 6, group A, member 1
Tssr23829 2 38727193 to 38727241 48 - TSS region transcription start site region 23829
Gm44146 2 38757871 to 38758686 815 - unclassified gene predicted gene, 44146
Rpl15-ps4 2 38777736 to 38778341 605 + pseudogene ribosomal protein L15, pseudogene 4
Tssr23830 2 38797171 to 38797176 5 - TSS region transcription start site region 23830
Tssr17564 2 38823229 to 38823272 43 + TSS region transcription start site region 17564
Nr6a1os 2 38823257 to 38852370 29113 + antisense lncRNA gene nuclear receptor subfamily 6, group A, member 1, opposite strand
Tssr17565 2 38823337 to 38823350 13 + TSS region transcription start site region 17565
Mir181a-2 2 38852735 to 38852810 75 + miRNA gene microRNA 181a-2
Mirc15 2 38852735 to 38853918 1183 complex/cluster/region microRNA cluster 15, including Mir181a-2 through Mir181b-2
Gm44144 2 38852978 to 38854937 1959 - unclassified gene predicted gene, 44144
Mir181b-2 2 38853830 to 38853918 88 + miRNA gene microRNA 181b-2
Tssr23831 2 38854919 to 38854922 3 - TSS region transcription start site region 23831
5730507A11Rik 2 38862163 to 38865533 3370 + unclassified gene RIKEN cDNA 5730507A11 gene
Tssr17566 2 38880884 to 38880888 4 + TSS region transcription start site region 17566
Cpgi11616 2 38925226 to 38926560 1334 CpG island CpG island 11616
Tssr17567 2 38925490 to 38925497 7 + TSS region transcription start site region 17567
Tssr23832 2 38926338 to 38926354 16 - TSS region transcription start site region 23832
Tssr23833 2 38926359 to 38926386 27 - TSS region transcription start site region 23833
Tssr23834 2 38926396 to 38926454 58 - TSS region transcription start site region 23834
Cpgi11617 2 38931757 to 38932362 605 CpG island CpG island 11617
Tssr17568 2 38931931 to 38931948 17 + TSS region transcription start site region 17568
Tssr17569 2 38931952 to 38931959 7 + TSS region transcription start site region 17569
Tssr17570 2 38931975 to 38932007 32 + TSS region transcription start site region 17570
Olfml2a 2 38931980 to 38960585 28605 + protein coding gene olfactomedin-like 2A
Tssr17571 2 38932015 to 38932031 16 + TSS region transcription start site region 17571
Gm13473 2 38939343 to 38939929 586 + pseudogene predicted gene 13473
Gm13474 2 38973947 to 38976816 2869 + pseudogene predicted gene 13474
Gm39801 2 38979373 to 38981646 2273 + lncRNA gene predicted gene, 39801
Gm29985 2 38981829 to 38988596 6767 - lncRNA gene predicted gene, 29985
Gm13496 2 38996713 to 38998258 1545 - antisense lncRNA gene predicted gene 13496
Cpgi11618 2 38997928 to 38998355 427 CpG island CpG island 11618
Tssr17572 2 38998302 to 38998340 38 + TSS region transcription start site region 17572
Wdr38 2 38998309 to 39001588 3279 + protein coding gene WD repeat domain 38
Rpl35 2 39001581 to 39005131 3550 - protein coding gene ribosomal protein L35
Cpgi11619 2 39004514 to 39005684 1170 CpG island CpG island 11619
Tssr23835 2 39005126 to 39005145 19 - TSS region transcription start site region 23835
Tssr17573 2 39005230 to 39005277 47 + TSS region transcription start site region 17573
Tssr17574 2 39005301 to 39005319 18 + TSS region transcription start site region 17574
Tssr23836 2 39005558 to 39005563 5 - TSS region transcription start site region 23836
Tssr23837 2 39005574 to 39005625 51 - TSS region transcription start site region 23837
Arpc5l 2 39007567 to 39015878 8311 + protein coding gene actin related protein 2/3 complex, subunit 5-like
Cpgi11620 2 39007747 to 39008895 1148 CpG island CpG island 11620
Tssr23838 2 39007951 to 39007974 23 - TSS region transcription start site region 23838
Tssr23839 2 39007986 to 39008015 29 - TSS region transcription start site region 23839
Tssr17575 2 39008043 to 39008071 28 + TSS region transcription start site region 17575
Tssr17576 2 39008076 to 39008174 98 + TSS region transcription start site region 17576
Golga1 2 39016155 to 39065541 49386 - protein coding gene golgi autoantigen, golgin subfamily a, 1
Gm26127 2 39027777 to 39027883 106 + snRNA gene predicted gene, 26127
Cpgi11621 2 39065048 to 39065883 835 CpG island CpG island 11621
Tssr23840 2 39065438 to 39065503 65 - TSS region transcription start site region 23840
Tssr23841 2 39065505 to 39065570 65 - TSS region transcription start site region 23841
Scai 2 39066214 to 39190730 124516 - protein coding gene suppressor of cancer cell invasion
Gm30067 2 39080119 to 39116581 36462 + lncRNA gene predicted gene, 30067
Tssr23842 2 39133087 to 39133090 3 - TSS region transcription start site region 23842
Gm18791 2 39153964 to 39154686 722 + pseudogene predicted gene, 18791
Gm16523 2 39157486 to 39162235 4749 - pseudogene predicted gene, 16523
D2Mit320 2 39159635 to 39159754 119 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 320
Gm44027 2 39178562 to 39182041 3479 - unclassified gene predicted gene, 44027
Tssr23843 2 39185551 to 39185554 3 - TSS region transcription start site region 23843
Cpgi11622 2 39190028 to 39191105 1077 CpG island CpG island 11622
Tssr23844 2 39190662 to 39190685 23 - TSS region transcription start site region 23844
Tssr23845 2 39190687 to 39190746 59 - TSS region transcription start site region 23845
Ppp6c 2 39194369 to 39226338 31969 - protein coding gene protein phosphatase 6, catalytic subunit
Tssr23846 2 39196552 to 39196573 21 - TSS region transcription start site region 23846
Tssr23847 2 39196864 to 39196880 16 - TSS region transcription start site region 23847
Gm13511 2 39216932 to 39217294 362 - pseudogene predicted gene 13511
Cpgi11623 2 39225735 to 39226531 796 CpG island CpG island 11623
Tssr23848 2 39226071 to 39226118 47 - TSS region transcription start site region 23848
Tssr23849 2 39226244 to 39226263 19 - TSS region transcription start site region 23849
Tssr23850 2 39226272 to 39226332 60 - TSS region transcription start site region 23850
Tssr23851 2 39226343 to 39226354 11 - TSS region transcription start site region 23851
Tssr23852 2 39226419 to 39226426 7 - TSS region transcription start site region 23852
Tssr23853 2 39226445 to 39226456 11 - TSS region transcription start site region 23853
Gm13504 2 39237126 to 39237441 315 - pseudogene predicted gene 13504
Vmn2r-ps2 2 39274106 to 39274870 764 + pseudogene vomeronasal 2, receptor, pseudogene 2
Tssr17577 2 39295980 to 39295984 4 + TSS region transcription start site region 17577
Gm13506 2 39395413 to 39399730 4317 + pseudogene predicted gene 13506
Cpgi11624 2 39420721 to 39421077 356 CpG island CpG island 11624
Tssr23854 2 39421123 to 39421144 21 - TSS region transcription start site region 23854
D2Mit368 2 39481586 to 39481684 98 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 368
Gm13454 2 39524873 to 39525355 482 - pseudogene predicted gene 13454
Gm13451 2 39558157 to 39558733 576 - pseudogene predicted gene 13451
Gm13452 2 39574630 to 39575590 960 + pseudogene predicted gene 13452