Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:38116680-38586690

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93 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Dennd1a 2 37798990 to 38287384 488394 - protein coding gene DENN/MADD domain containing 1A
Tssr23787 2 38149747 to 38149756 9 - TSS region transcription start site region 23787
Tssr23788 2 38154484 to 38154488 4 - TSS region transcription start site region 23788
Tssr482 2 38166074 to 38166081 7 - TSS region transcription start site region 482
Tssr23789 2 38166090 to 38166120 30 - TSS region transcription start site region 23789
Tssr483 2 38166143 to 38166151 8 - TSS region transcription start site region 483
Tssr23790 2 38166159 to 38166166 7 - TSS region transcription start site region 23790
Tssr23791 2 38190679 to 38190693 14 - TSS region transcription start site region 23791
Tssr23792 2 38190864 to 38190868 4 - TSS region transcription start site region 23792
Tssr23793 2 38194454 to 38194475 21 - TSS region transcription start site region 23793
Tssr23794 2 38212441 to 38212454 13 - TSS region transcription start site region 23794
Tssr23795 2 38214443 to 38214459 16 - TSS region transcription start site region 23795
Tssr23796 2 38217015 to 38217036 21 - TSS region transcription start site region 23796
2610030P05Rik 2 38218367 to 38219848 1481 unclassified gene RIKEN cDNA 2610030P05 gene
8030493G06Rik 2 38221853 to 38224503 2650 unclassified gene RIKEN cDNA 8030493G06 gene
Tssr23797 2 38224488 to 38224507 19 - TSS region transcription start site region 23797
Gm44455 2 38225041 to 38225122 81 - miRNA gene predicted gene, 44455
Tssr23798 2 38228211 to 38228221 10 - TSS region transcription start site region 23798
Tssr23799 2 38229986 to 38229997 11 - TSS region transcription start site region 23799
Tssr23800 2 38230037 to 38230046 9 - TSS region transcription start site region 23800
Pbwg1.2 2 38239713 to 38239859 146 QTL postnatal body weight growth 1.2
Pvldlc1 2 38239713 to 67242263 29002550 QTL plasma VLDL-cholesterol 1
D2Mit7 2 38239713 to 38239859 146 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 7
Etohc1 2 38239713 to 38239859 146 QTL ethanol consumption 1
Hdl8 2 38239713 to 67242263 29002550 QTL high density lipoprotein (HDL) level 8
Lanq1 2 38239713 to 67242263 29002550 QTL lanosterol level QTL 1
Tssr23801 2 38263158 to 38263162 4 - TSS region transcription start site region 23801
Tssr23802 2 38281990 to 38281998 8 - TSS region transcription start site region 23802
Gm13556 2 38285307 to 38287291 1984 + antisense lncRNA gene predicted gene 13556
Cpgi11601 2 38286703 to 38287668 965 CpG island CpG island 11601
Tssr23803 2 38287174 to 38287195 21 - TSS region transcription start site region 23803
Tssr23804 2 38287209 to 38287225 16 - TSS region transcription start site region 23804
Tssr23805 2 38287292 to 38287298 6 - TSS region transcription start site region 23805
Tssr23806 2 38287316 to 38287321 5 - TSS region transcription start site region 23806
Tssr23807 2 38287347 to 38287394 47 - TSS region transcription start site region 23807
Tssr23808 2 38290402 to 38290416 14 - TSS region transcription start site region 23808
Gm46736 2 38335271 to 38339227 3956 - lncRNA gene predicted gene, 46736
Cpgi11602 2 38338617 to 38339962 1345 CpG island CpG island 11602
Tssr17535 2 38339258 to 38339278 20 + TSS region transcription start site region 17535
Lhx2 2 38339281 to 38369733 30452 + protein coding gene LIM homeobox protein 2
Tssr17536 2 38341068 to 38341080 12 + TSS region transcription start site region 17536
Gm27197 2 38347357 to 38348316 959 - antisense lncRNA gene predicted gene 27197
Cpgi11603 2 38347732 to 38349001 1269 CpG island CpG island 11603
Cpgi11604 2 38350469 to 38352639 2170 CpG island CpG island 11604
Tssr17537 2 38351060 to 38351080 20 + TSS region transcription start site region 17537
Tssr17538 2 38351205 to 38351214 9 + TSS region transcription start site region 17538
Tssr17539 2 38351224 to 38351246 22 + TSS region transcription start site region 17539
Tssr484 2 38351496 to 38351515 19 + TSS region transcription start site region 484
Tssr17540 2 38351680 to 38351690 10 + TSS region transcription start site region 17540
Cpgi11605 2 38354485 to 38355362 877 CpG island CpG island 11605
Tssr17541 2 38354749 to 38354764 15 + TSS region transcription start site region 17541
Tssr17542 2 38354794 to 38354804 10 + TSS region transcription start site region 17542
Cpgi11606 2 38356378 to 38357183 805 CpG island CpG island 11606
Gm13584 2 38359580 to 38363980 4400 - antisense lncRNA gene predicted gene 13584
Cpgi11607 2 38368786 to 38369133 347 CpG island CpG island 11607
Tssr23809 2 38368958 to 38369004 46 - TSS region transcription start site region 23809
Tssr23810 2 38369013 to 38369024 11 - TSS region transcription start site region 23810
Tssr17543 2 38369096 to 38369107 11 + TSS region transcription start site region 17543
Cpgi11608 2 38375960 to 38376263 303 CpG island CpG island 11608
Cpgi11609 2 38379200 to 38379561 361 CpG island CpG island 11609
Gm13589 2 38424002 to 38455851 31849 + lincRNA gene predicted gene 13589
Tssr17544 2 38432531 to 38432534 3 + TSS region transcription start site region 17544
Gm39799 2 38468277 to 38502499 34222 - lncRNA gene predicted gene, 39799
Tssr17545 2 38472152 to 38472169 17 + TSS region transcription start site region 17545
Tssr17546 2 38472194 to 38472208 14 + TSS region transcription start site region 17546
Tssr17547 2 38473124 to 38473136 12 + TSS region transcription start site region 17547
Gm25081 2 38480338 to 38480445 107 + snRNA gene predicted gene, 25081
Tssr17548 2 38481371 to 38481386 15 + TSS region transcription start site region 17548
Tssr23811 2 38484666 to 38484707 41 - TSS region transcription start site region 23811
Tssr17549 2 38490022 to 38490025 3 + TSS region transcription start site region 17549
Gm13588 2 38490104 to 38490238 134 + pseudogene predicted gene 13588
Tssr485 2 38500004 to 38500006 2 + TSS region transcription start site region 485
Gm44062 2 38500192 to 38505048 4856 + unclassified gene predicted gene, 44062
Cpgi11610 2 38511323 to 38512455 1132 CpG island CpG island 11610
Tssr17550 2 38511491 to 38511523 32 + TSS region transcription start site region 17550
Tssr17551 2 38511547 to 38511551 4 + TSS region transcription start site region 17551
Tssr23812 2 38511549 to 38511558 9 - TSS region transcription start site region 23812
Tssr17552 2 38511670 to 38511747 77 + TSS region transcription start site region 17552
Nek6 2 38511697 to 38587490 75793 + protein coding gene NIMA (never in mitosis gene a)-related expressed kinase 6
Tssr17553 2 38511873 to 38511884 11 + TSS region transcription start site region 17553
Tssr17554 2 38513240 to 38513250 10 + TSS region transcription start site region 17554
Tssr17555 2 38517357 to 38517385 28 + TSS region transcription start site region 17555
Gm46737 2 38519683 to 38524922 5239 + lncRNA gene predicted gene, 46737
Tssr17556 2 38522324 to 38522339 15 + TSS region transcription start site region 17556
Gm35808 2 38532817 to 38534926 2109 - lncRNA gene predicted gene, 35808
Tssr17557 2 38533689 to 38533695 6 + TSS region transcription start site region 17557
Tssr17558 2 38533802 to 38533803 1 + TSS region transcription start site region 17558
Tssr17559 2 38536127 to 38536144 17 + TSS region transcription start site region 17559
Tssr23813 2 38536291 to 38536334 43 - TSS region transcription start site region 23813
Tssr17560 2 38536605 to 38536616 11 + TSS region transcription start site region 17560
Tssr17561 2 38536864 to 38536867 3 + TSS region transcription start site region 17561
Gm44183 2 38564727 to 38566354 1627 - unclassified gene predicted gene, 44183
Tssr17562 2 38586078 to 38586089 11 + TSS region transcription start site region 17562