Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:37638483-38368484

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91 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Strbp 2 37569868 to 37703967 134099 - protein coding gene spermatid perinuclear RNA binding protein
Tssr23767 2 37647199 to 37647229 30 - TSS region transcription start site region 23767
Tssr23768 2 37656526 to 37656529 3 - TSS region transcription start site region 23768
Gm44063 2 37659146 to 37659521 375 + pseudogene predicted gene, 44063
Tssr23769 2 37661160 to 37661164 4 - TSS region transcription start site region 23769
Gm13543 2 37672208 to 37673003 795 + pseudogene predicted gene 13543
Tssr23770 2 37677896 to 37677901 5 - TSS region transcription start site region 23770
Mir5128 2 37688201 to 37688284 83 - miRNA gene microRNA 5128
Tssr23771 2 37689156 to 37689159 3 - TSS region transcription start site region 23771
Cpgi11596 2 37702378 to 37704031 1653 CpG island CpG island 11596
Tssr23772 2 37703067 to 37703094 27 - TSS region transcription start site region 23772
Tssr23773 2 37703279 to 37703290 11 - TSS region transcription start site region 23773
Tssr23774 2 37703299 to 37703382 83 - TSS region transcription start site region 23774
Tssr23775 2 37703845 to 37703885 40 - TSS region transcription start site region 23775
Cpgi11597 2 37765249 to 37765443 194 CpG island CpG island 11597
Tssr17531 2 37776229 to 37776258 29 + TSS region transcription start site region 17531
Crb2 2 37776249 to 37799103 22854 + protein coding gene crumbs family member 2
Tssr17532 2 37776259 to 37776274 15 + TSS region transcription start site region 17532
Tssr17533 2 37776281 to 37776297 16 + TSS region transcription start site region 17533
Cpgi11598 2 37786245 to 37787386 1141 CpG island CpG island 11598
Cpgi11599 2 37790942 to 37791195 253 CpG island CpG island 11599
Cpgi11600 2 37792814 to 37794007 1193 CpG island CpG island 11600
Dennd1a 2 37798990 to 38287384 488394 - protein coding gene DENN/MADD domain containing 1A
Tssr23776 2 37801018 to 37801030 12 - TSS region transcription start site region 23776
Tssr23777 2 37801212 to 37801226 14 - TSS region transcription start site region 23777
Tssr23778 2 37802175 to 37802204 29 - TSS region transcription start site region 23778
Tssr23779 2 37811003 to 37811007 4 - TSS region transcription start site region 23779
Tssr23780 2 37843926 to 37843944 18 - TSS region transcription start site region 23780
Tssr23781 2 37896596 to 37896618 22 - TSS region transcription start site region 23781
Tssr23782 2 37914665 to 37914669 4 - TSS region transcription start site region 23782
Tssr23783 2 37919986 to 37920008 22 - TSS region transcription start site region 23783
Tssr23784 2 37975366 to 37975373 7 - TSS region transcription start site region 23784
Tssr17534 2 38003483 to 38003484 1 + TSS region transcription start site region 17534
Gm44283 2 38015218 to 38019167 3949 - unclassified gene predicted gene, 44283
Gm44443 2 38025795 to 38031427 5632 + unclassified gene predicted gene, 44443
Tssr23785 2 38036836 to 38036848 12 - TSS region transcription start site region 23785
Tssr23786 2 38078377 to 38078378 1 - TSS region transcription start site region 23786
Gm44291 2 38104432 to 38107296 2864 - unclassified gene predicted gene, 44291
Tssr23787 2 38149747 to 38149756 9 - TSS region transcription start site region 23787
Tssr23788 2 38154484 to 38154488 4 - TSS region transcription start site region 23788
Tssr482 2 38166074 to 38166081 7 - TSS region transcription start site region 482
Tssr23789 2 38166090 to 38166120 30 - TSS region transcription start site region 23789
Tssr483 2 38166143 to 38166151 8 - TSS region transcription start site region 483
Tssr23790 2 38166159 to 38166166 7 - TSS region transcription start site region 23790
Tssr23791 2 38190679 to 38190693 14 - TSS region transcription start site region 23791
Tssr23792 2 38190864 to 38190868 4 - TSS region transcription start site region 23792
Tssr23793 2 38194454 to 38194475 21 - TSS region transcription start site region 23793
Tssr23794 2 38212441 to 38212454 13 - TSS region transcription start site region 23794
Tssr23795 2 38214443 to 38214459 16 - TSS region transcription start site region 23795
Tssr23796 2 38217015 to 38217036 21 - TSS region transcription start site region 23796
2610030P05Rik 2 38218367 to 38219848 1481 unclassified gene RIKEN cDNA 2610030P05 gene
8030493G06Rik 2 38221853 to 38224503 2650 unclassified gene RIKEN cDNA 8030493G06 gene
Tssr23797 2 38224488 to 38224507 19 - TSS region transcription start site region 23797
Gm44455 2 38225041 to 38225122 81 - miRNA gene predicted gene, 44455
Tssr23798 2 38228211 to 38228221 10 - TSS region transcription start site region 23798
Tssr23799 2 38229986 to 38229997 11 - TSS region transcription start site region 23799
Tssr23800 2 38230037 to 38230046 9 - TSS region transcription start site region 23800
Etohc1 2 38239713 to 38239859 146 QTL ethanol consumption 1
Lanq1 2 38239713 to 67242263 29002550 QTL lanosterol level QTL 1
Pvldlc1 2 38239713 to 67242263 29002550 QTL plasma VLDL-cholesterol 1
Hdl8 2 38239713 to 67242263 29002550 QTL high density lipoprotein (HDL) level 8
Pbwg1.2 2 38239713 to 38239859 146 QTL postnatal body weight growth 1.2
D2Mit7 2 38239713 to 38239859 146 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 7
Tssr23801 2 38263158 to 38263162 4 - TSS region transcription start site region 23801
Tssr23802 2 38281990 to 38281998 8 - TSS region transcription start site region 23802
Gm13556 2 38285307 to 38287291 1984 + antisense lncRNA gene predicted gene 13556
Cpgi11601 2 38286703 to 38287668 965 CpG island CpG island 11601
Tssr23803 2 38287174 to 38287195 21 - TSS region transcription start site region 23803
Tssr23804 2 38287209 to 38287225 16 - TSS region transcription start site region 23804
Tssr23805 2 38287292 to 38287298 6 - TSS region transcription start site region 23805
Tssr23806 2 38287316 to 38287321 5 - TSS region transcription start site region 23806
Tssr23807 2 38287347 to 38287394 47 - TSS region transcription start site region 23807
Tssr23808 2 38290402 to 38290416 14 - TSS region transcription start site region 23808
Gm46736 2 38335271 to 38339227 3956 - lncRNA gene predicted gene, 46736
Cpgi11602 2 38338617 to 38339962 1345 CpG island CpG island 11602
Tssr17535 2 38339258 to 38339278 20 + TSS region transcription start site region 17535
Lhx2 2 38339281 to 38369733 30452 + protein coding gene LIM homeobox protein 2
Tssr17536 2 38341068 to 38341080 12 + TSS region transcription start site region 17536
Gm27197 2 38347357 to 38348316 959 - antisense lncRNA gene predicted gene 27197
Cpgi11603 2 38347732 to 38349001 1269 CpG island CpG island 11603
Cpgi11604 2 38350469 to 38352639 2170 CpG island CpG island 11604
Tssr17537 2 38351060 to 38351080 20 + TSS region transcription start site region 17537
Tssr17538 2 38351205 to 38351214 9 + TSS region transcription start site region 17538
Tssr17539 2 38351224 to 38351246 22 + TSS region transcription start site region 17539
Tssr484 2 38351496 to 38351515 19 + TSS region transcription start site region 484
Tssr17540 2 38351680 to 38351690 10 + TSS region transcription start site region 17540
Cpgi11605 2 38354485 to 38355362 877 CpG island CpG island 11605
Tssr17541 2 38354749 to 38354764 15 + TSS region transcription start site region 17541
Tssr17542 2 38354794 to 38354804 10 + TSS region transcription start site region 17542
Cpgi11606 2 38356378 to 38357183 805 CpG island CpG island 11606
Gm13584 2 38359580 to 38363980 4400 - antisense lncRNA gene predicted gene 13584