Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:3662426-4835592

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136 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr15902 2 3664530 to 3664538 8 + TSS region transcription start site region 15902
Gm13183 2 3679802 to 3680590 788 - pseudogene predicted gene 13183
Tssr15903 2 3686322 to 3686356 34 + TSS region transcription start site region 15903
Gm13181 2 3686362 to 3687430 1068 + pseudogene predicted gene 13181
Tssr15904 2 3704787 to 3704798 11 + TSS region transcription start site region 15904
Fam107b 2 3704812 to 3782142 77330 + protein coding gene family with sequence similarity 107, member B
Cpgi11155 2 3713202 to 3714203 1001 CpG island CpG island 11155
Tssr22377 2 3713315 to 3713350 35 - TSS region transcription start site region 22377
Tssr15905 2 3713440 to 3713443 3 + TSS region transcription start site region 15905
Tssr15906 2 3713449 to 3713474 25 + TSS region transcription start site region 15906
Tssr15907 2 3713479 to 3713500 21 + TSS region transcription start site region 15907
Tssr15908 2 3713517 to 3713528 11 + TSS region transcription start site region 15908
Tssr22378 2 3715579 to 3715598 19 - TSS region transcription start site region 22378
Tssr22379 2 3718095 to 3718108 13 - TSS region transcription start site region 22379
Tssr15909 2 3723197 to 3723202 5 + TSS region transcription start site region 15909
Tssr15910 2 3723752 to 3723798 46 + TSS region transcription start site region 15910
Tssr22380 2 3726720 to 3726748 28 - TSS region transcription start site region 22380
Tssr22381 2 3726787 to 3726808 21 - TSS region transcription start site region 22381
Tssr15911 2 3727174 to 3727185 11 + TSS region transcription start site region 15911
Tssr15912 2 3730957 to 3730996 39 + TSS region transcription start site region 15912
Tssr15913 2 3731062 to 3731067 5 + TSS region transcription start site region 15913
Tssr22382 2 3731318 to 3731327 9 - TSS region transcription start site region 22382
Tssr15914 2 3733067 to 3733075 8 + TSS region transcription start site region 15914
Tssr15915 2 3749249 to 3749260 11 + TSS region transcription start site region 15915
Tssr15916 2 3749273 to 3749290 17 + TSS region transcription start site region 15916
Tssr15917 2 3749302 to 3749320 18 + TSS region transcription start site region 15917
Tssr15918 2 3749326 to 3749364 38 + TSS region transcription start site region 15918
Tssr15919 2 3749948 to 3749952 4 + TSS region transcription start site region 15919
Gm13185 2 3752986 to 3755177 2191 - antisense lncRNA gene predicted gene 13185
Tssr15920 2 3770639 to 3770664 25 + TSS region transcription start site region 15920
Tssr15921 2 3770673 to 3770682 9 + TSS region transcription start site region 15921
D2Mit356b 2 3778683 to 3778795 112 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 356b
D2Mit356a 2 3778683 to 3778728 45 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 356a
Tssr388 2 3779887 to 3779917 30 + TSS region transcription start site region 388
Tssr15922 2 3779922 to 3779938 16 + TSS region transcription start site region 15922
Tssr15923 2 3780090 to 3780114 24 + TSS region transcription start site region 15923
Tssr15924 2 3780923 to 3780929 6 + TSS region transcription start site region 15924
Tssr389 2 3781828 to 3781832 4 + TSS region transcription start site region 389
Gm36031 2 3807845 to 3824328 16483 + lncRNA gene predicted gene, 36031
Tssr15925 2 3810195 to 3810210 15 + TSS region transcription start site region 15925
Gm13180 2 3855030 to 3877575 22545 + lincRNA gene predicted gene 13180
D2Mit1 2 3886089 to 3886211 122 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 1
Orgwq2 2 3886089 to 93591306 89705217 QTL organ weight QTL 2
Gm13191 2 3925808 to 3929139 3331 - lincRNA gene predicted gene 13191
D2Mit115 2 3928829 to 3928983 154 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 115
D2Mit231 2 3932099 to 3932248 149 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 231
Tssr390 2 4017685 to 4017696 11 + TSS region transcription start site region 390
Tssr15926 2 4017706 to 4017722 16 + TSS region transcription start site region 15926
Frmd4a 2 4017717 to 4614043 596326 + protein coding gene FERM domain containing 4A
Tssr15927 2 4017727 to 4017745 18 + TSS region transcription start site region 15927
Tssr15928 2 4017757 to 4017768 11 + TSS region transcription start site region 15928
Gm2639 2 4051263 to 4052559 1296 - pseudogene predicted gene 2639
Tssr15929 2 4057908 to 4057919 11 + TSS region transcription start site region 15929
Tssr15930 2 4058104 to 4058134 30 + TSS region transcription start site region 15930
Gm13188 2 4081855 to 4082418 563 - pseudogene predicted gene 13188
Gm10862 2 4091140 to 4094489 3349 + sense intronic lncRNA gene predicted gene 10862
Gm38085 2 4103877 to 4106938 3061 + sense intronic lncRNA gene predicted gene, 38085
Tssr15931 2 4131659 to 4131664 5 + TSS region transcription start site region 15931
1700080N15Rik 2 4132065 to 4141141 9076 - antisense lncRNA gene RIKEN cDNA 1700080N15 gene
Gm13189 2 4137774 to 4144102 6328 + lincRNA gene predicted gene 13189
Gm37814 2 4138984 to 4142627 3643 + sense intronic lncRNA gene predicted gene, 37814
Tssr22383 2 4141128 to 4141146 18 - TSS region transcription start site region 22383
Tssr15932 2 4141270 to 4141281 11 + TSS region transcription start site region 15932
Tssr15933 2 4152588 to 4152610 22 + TSS region transcription start site region 15933
Tssr15934 2 4152615 to 4152644 29 + TSS region transcription start site region 15934
Tssr15935 2 4165964 to 4165969 5 + TSS region transcription start site region 15935
Gm37107 2 4178110 to 4180661 2551 + sense intronic lncRNA gene predicted gene, 37107
Gm38348 2 4217081 to 4219353 2272 + sense intronic lncRNA gene predicted gene, 38348
Tssr15936 2 4218167 to 4218170 3 + TSS region transcription start site region 15936
Gm39752 2 4247426 to 4250592 3166 + lncRNA gene predicted gene, 39752
Tssr15937 2 4285236 to 4285253 17 + TSS region transcription start site region 15937
Gm13187 2 4289345 to 4301144 11799 - lncRNA gene predicted gene 13187
Tssr15938 2 4300462 to 4300522 60 + TSS region transcription start site region 15938
Tssr15939 2 4300537 to 4300568 31 + TSS region transcription start site region 15939
Tssr15940 2 4300590 to 4300599 9 + TSS region transcription start site region 15940
Tssr15941 2 4300604 to 4300617 13 + TSS region transcription start site region 15941
Tssr15942 2 4300623 to 4300635 12 + TSS region transcription start site region 15942
Tssr15943 2 4300727 to 4300741 14 + TSS region transcription start site region 15943
Tssr15944 2 4300749 to 4300765 16 + TSS region transcription start site region 15944
Tssr15945 2 4300773 to 4300797 24 + TSS region transcription start site region 15945
Tssr15946 2 4300877 to 4300904 27 + TSS region transcription start site region 15946
Tssr15947 2 4300908 to 4300931 23 + TSS region transcription start site region 15947
Gm36988 2 4316479 to 4318886 2407 + sense intronic lncRNA gene predicted gene, 36988
Gm23691 2 4380961 to 4381067 106 - snRNA gene predicted gene, 23691
Tssr15948 2 4389455 to 4389467 12 + TSS region transcription start site region 15948
Tssr15949 2 4389594 to 4389602 8 + TSS region transcription start site region 15949
Tssr15950 2 4389615 to 4389639 24 + TSS region transcription start site region 15950
Tssr15951 2 4399245 to 4399249 4 + TSS region transcription start site region 15951
Cpgi11156 2 4400785 to 4402037 1252 CpG island CpG island 11156
Tssr15952 2 4400798 to 4400828 30 + TSS region transcription start site region 15952
Tssr15953 2 4400958 to 4400969 11 + TSS region transcription start site region 15953
Tssr15954 2 4401096 to 4401120 24 + TSS region transcription start site region 15954
Tssr15955 2 4401160 to 4401172 12 + TSS region transcription start site region 15955
Tssr15956 2 4401291 to 4401332 41 + TSS region transcription start site region 15956
Tssr15957 2 4401393 to 4401500 107 + TSS region transcription start site region 15957
Tssr15958 2 4401505 to 4401524 19 + TSS region transcription start site region 15958
Tssr15959 2 4401539 to 4401556 17 + TSS region transcription start site region 15959
Tssr15960 2 4416287 to 4416319 32 + TSS region transcription start site region 15960
Tssr15961 2 4431946 to 4431997 51 + TSS region transcription start site region 15961
Gm13175 2 4458434 to 4466670 8236 - antisense lncRNA gene predicted gene 13175
D2Mit425 2 4459607 to 4459699 92 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology 425
Gm39751 2 4473223 to 4510570 37347 - lncRNA gene predicted gene, 39751
Cpgi11157 2 4559540 to 4560044 504 CpG island CpG island 11157
Tssr15962 2 4559602 to 4559629 27 + TSS region transcription start site region 15962
Tssr15963 2 4559645 to 4559656 11 + TSS region transcription start site region 15963
Tssr22384 2 4559671 to 4559694 23 - TSS region transcription start site region 22384
Tssr15964 2 4559701 to 4559706 5 + TSS region transcription start site region 15964
Tssr15965 2 4559742 to 4559755 13 + TSS region transcription start site region 15965
Tssr15966 2 4559759 to 4559810 51 + TSS region transcription start site region 15966
Tssr15967 2 4559878 to 4559892 14 + TSS region transcription start site region 15967
Tssr15968 2 4559913 to 4559930 17 + TSS region transcription start site region 15968
Tssr15969 2 4559931 to 4559943 12 + TSS region transcription start site region 15969
Tssr15970 2 4560050 to 4560063 13 + TSS region transcription start site region 15970
Tssr15971 2 4560118 to 4560148 30 + TSS region transcription start site region 15971
D2Mit426 2 4561924 to 4562098 174 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology 426
Gm13179 2 4586024 to 4587287 1263 - antisense lncRNA gene predicted gene 13179
Tssr22385 2 4593535 to 4593570 35 - TSS region transcription start site region 22385
Tssr15972 2 4597266 to 4597291 25 + TSS region transcription start site region 15972
D2Mit355 2 4598040 to 4598186 146 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 355
Cpgi11158 2 4603390 to 4604315 925 CpG island CpG island 11158
Prpf18 2 4622058 to 4652113 30055 - protein coding gene pre-mRNA processing factor 18
Cpgi11159 2 4651579 to 4652248 669 CpG island CpG island 11159
Tssr22386 2 4652060 to 4652077 17 - TSS region transcription start site region 22386
Tssr22387 2 4652087 to 4652140 53 - TSS region transcription start site region 22387
Tssr15973 2 4700221 to 4700232 11 + TSS region transcription start site region 15973
Gm13196 2 4700238 to 4700616 378 + pseudogene predicted gene 13196
D2Ertd623e 2 4704666 to 4704879 213 DNA segment DNA segment, Chr 2, ERATO Doi 623, expressed
Cpgi11160 2 4717285 to 4718673 1388 CpG island CpG island 11160
Tssr15974 2 4717825 to 4717893 68 + TSS region transcription start site region 15974
Bend7 2 4717831 to 4802142 84311 + protein coding gene BEN domain containing 7
Tssr15975 2 4718191 to 4718205 14 + TSS region transcription start site region 15975
Tssr15976 2 4739316 to 4739320 4 + TSS region transcription start site region 15976
Tssr391 2 4822621 to 4822629 8 + TSS region transcription start site region 391
Gm36389 2 4825247 to 4829501 4254 + lncRNA gene predicted gene, 36389
D2Mit76 2 4830770 to 4830908 138 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 76
Gm13176 2 4834136 to 4834612 476 - pseudogene predicted gene 13176