Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:36397732-40299001

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338 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Olfr339 2 36421400 to 36422329 929 + protein coding gene olfactory receptor 339
Olfr340 2 36452587 to 36453525 938 + protein coding gene olfactory receptor 340
Olfr341 2 36479187 to 36480128 941 - protein coding gene olfactory receptor 341
Gm47783 2 36526820 to 36526897 77 + pseudogene predicted gene, 47783
Olfr342 2 36527414 to 36528352 938 + protein coding gene olfactory receptor 342
D2Ucl21 2 36533014 to 36533217 203 DNA segment DNA segment, Chr 2, University College London 21
Olfr343-ps1 2 36539197 to 36539499 302 + pseudogene olfactory receptor 343, pseudogene 1
Olfr344 2 36568600 to 36569529 929 + protein coding gene olfactory receptor 344
Olfr345 2 36640041 to 36640976 935 + protein coding gene olfactory receptor 345
Olfr346 2 36688004 to 36688933 929 + protein coding gene olfactory receptor 346
Tssr17520 2 36715186 to 36715196 10 + TSS region transcription start site region 17520
Olfr347 2 36734323 to 36735261 938 + protein coding gene olfactory receptor 347
Gm13438 2 36768688 to 36769260 572 + pseudogene predicted gene 13438
Olfr348 2 36784282 to 36787468 3186 + protein coding gene olfactory receptor 348
Olfr50 2 36793238 to 36794176 938 + protein coding gene olfactory receptor 50
Gm13436 2 36807826 to 36808392 566 - pseudogene predicted gene 13436
Tssr23744 2 36808419 to 36808429 10 - TSS region transcription start site region 23744
Olfr3 2 36812149 to 36813090 941 - protein coding gene olfactory receptor 3
Olfr349-ps1 2 36844518 to 36845126 608 + pseudogene olfactory receptor 349, pseudogene 1
Olfr350 2 36850048 to 36850986 938 + protein coding gene olfactory receptor 350
Olfr351 2 36859414 to 36860346 932 - protein coding gene olfactory receptor 351
Olfr352 2 36869568 to 36870515 947 + protein coding gene olfactory receptor 352
Olfr353 2 36889911 to 36890846 935 - protein coding gene olfactory receptor 353
Olfr354 2 36906948 to 36907901 953 + protein coding gene olfactory receptor 354
Gm13440 2 36909095 to 36909590 495 + pseudogene predicted gene 13440
Olfr355 2 36927180 to 36928112 932 - protein coding gene olfactory receptor 355
Olfr356 2 36937121 to 36938068 947 + protein coding gene olfactory receptor 356
Olfr357 2 36996812 to 36997738 926 + protein coding gene olfactory receptor 357
Olfr358 2 37004620 to 37005612 992 - protein coding gene olfactory receptor 358
Olfr359-ps1 2 37019271 to 37020196 925 - pseudogene olfactory receptor 359, pseudogene 1
Gm13439 2 37036024 to 37036432 408 + pseudogene predicted gene 13439
Olfr360 2 37068307 to 37069260 953 + protein coding gene olfactory receptor 360
Gm13437 2 37074022 to 37082455 8433 - pseudogene predicted gene 13437
Olfr361 2 37084778 to 37085746 968 - protein coding gene olfactory receptor 361
Olfr362 2 37104695 to 37105648 953 - protein coding gene olfactory receptor 362
Olfr363-ps 2 37106257 to 37106510 253 - pseudogene olfactory receptor 363, pseudogene
Olfr364-ps1 2 37146214 to 37147137 923 + pseudogene olfactory receptor 364, pseudogene 1
Tssr23745 2 37146567 to 37146572 5 - TSS region transcription start site region 23745
Olfr365 2 37192905 to 37202181 9276 + protein coding gene olfactory receptor 365
Gm13435 2 37207051 to 37208072 1021 + pseudogene predicted gene 13435
Olfr366 2 37219491 to 37220420 929 + protein coding gene olfactory receptor 366
Olfr367-ps 2 37266951 to 37271387 4436 + pseudogene olfactory receptor 367, pseudogene
Gm22306 2 37282051 to 37282157 106 + snRNA gene predicted gene, 22306
Olfr368 2 37331749 to 37332732 983 + protein coding gene olfactory receptor 368
Pdcl 2 37350074 to 37359332 9258 - protein coding gene phosducin-like
Tssr23746 2 37350844 to 37350861 17 - TSS region transcription start site region 23746
Tssr23747 2 37351072 to 37351090 18 - TSS region transcription start site region 23747
Cpgi11591 2 37358875 to 37359410 535 CpG island CpG island 11591
Tssr23748 2 37359201 to 37359230 29 - TSS region transcription start site region 23748
Tssr23749 2 37359235 to 37359270 35 - TSS region transcription start site region 23749
Tssr23750 2 37359274 to 37359290 16 - TSS region transcription start site region 23750
Tssr23751 2 37367735 to 37367745 10 - TSS region transcription start site region 23751
Rc3h2 2 37370069 to 37422903 52834 - protein coding gene ring finger and CCCH-type zinc finger domains 2
Tssr23752 2 37373445 to 37373482 37 - TSS region transcription start site region 23752
Tssr23753 2 37374665 to 37374669 4 - TSS region transcription start site region 23753
Snord90 2 37400061 to 37400128 67 - snoRNA gene small nucleolar RNA, C/D box 90
Cpgi11592 2 37422248 to 37423217 969 CpG island CpG island 11592
Tssr23754 2 37422895 to 37422958 63 - TSS region transcription start site region 23754
Tssr23755 2 37423006 to 37423055 49 - TSS region transcription start site region 23755
Zbtb6 2 37425500 to 37430919 5419 - protein coding gene zinc finger and BTB domain containing 6
Tssr23756 2 37428251 to 37428284 33 - TSS region transcription start site region 23756
Cpgi11593 2 37430553 to 37431208 655 CpG island CpG island 11593
Tssr23757 2 37430808 to 37430821 13 - TSS region transcription start site region 23757
Tssr23758 2 37430835 to 37430898 63 - TSS region transcription start site region 23758
Tssr17521 2 37430924 to 37430973 49 + TSS region transcription start site region 17521
Zbtb26 2 37432168 to 37443121 10953 - protein coding gene zinc finger and BTB domain containing 26
Cpgi11594 2 37442944 to 37443559 615 CpG island CpG island 11594
Tssr23759 2 37443096 to 37443178 82 - TSS region transcription start site region 23759
Tssr17522 2 37443273 to 37443339 66 + TSS region transcription start site region 17522
Rabgap1 2 37443281 to 37566454 123173 + protein coding gene RAB GTPase activating protein 1
Tssr17523 2 37443342 to 37443359 17 + TSS region transcription start site region 17523
Cpgi11595 2 37451982 to 37452686 704 CpG island CpG island 11595
Tssr17524 2 37452216 to 37452230 14 + TSS region transcription start site region 17524
Tssr17525 2 37452231 to 37452286 55 + TSS region transcription start site region 17525
Gm17893 2 37488675 to 37489444 769 + pseudogene predicted gene, 17893
Tssr17526 2 37505396 to 37505400 4 + TSS region transcription start site region 17526
Tssr17527 2 37516592 to 37516606 14 + TSS region transcription start site region 17527
Tssr17528 2 37516618 to 37516634 16 + TSS region transcription start site region 17528
Gpr21 2 37516626 to 37519281 2655 + protein coding gene G protein-coupled receptor 21
Tssr17529 2 37532775 to 37532779 4 + TSS region transcription start site region 17529
Tssr17530 2 37551386 to 37551389 3 + TSS region transcription start site region 17530
Strbp 2 37569868 to 37703967 134099 - protein coding gene spermatid perinuclear RNA binding protein
Tssr23760 2 37573613 to 37573617 4 - TSS region transcription start site region 23760
Tssr23761 2 37577572 to 37577588 16 - TSS region transcription start site region 23761
Tssr23762 2 37583052 to 37583056 4 - TSS region transcription start site region 23762
Tssr23763 2 37585879 to 37585882 3 - TSS region transcription start site region 23763
Tssr23764 2 37591575 to 37591578 3 - TSS region transcription start site region 23764
Tssr23765 2 37592727 to 37592731 4 - TSS region transcription start site region 23765
Tssr23766 2 37632923 to 37632926 3 - TSS region transcription start site region 23766
Tssr23767 2 37647199 to 37647229 30 - TSS region transcription start site region 23767
Tssr23768 2 37656526 to 37656529 3 - TSS region transcription start site region 23768
Gm44063 2 37659146 to 37659521 375 + pseudogene predicted gene, 44063
Tssr23769 2 37661160 to 37661164 4 - TSS region transcription start site region 23769
Gm13543 2 37672208 to 37673003 795 + pseudogene predicted gene 13543
Tssr23770 2 37677896 to 37677901 5 - TSS region transcription start site region 23770
Mir5128 2 37688201 to 37688284 83 - miRNA gene microRNA 5128
Tssr23771 2 37689156 to 37689159 3 - TSS region transcription start site region 23771
Cpgi11596 2 37702378 to 37704031 1653 CpG island CpG island 11596
Tssr23772 2 37703067 to 37703094 27 - TSS region transcription start site region 23772
Tssr23773 2 37703279 to 37703290 11 - TSS region transcription start site region 23773
Tssr23774 2 37703299 to 37703382 83 - TSS region transcription start site region 23774
Tssr23775 2 37703845 to 37703885 40 - TSS region transcription start site region 23775
Cpgi11597 2 37765249 to 37765443 194 CpG island CpG island 11597
Tssr17531 2 37776229 to 37776258 29 + TSS region transcription start site region 17531
Crb2 2 37776249 to 37799103 22854 + protein coding gene crumbs family member 2
Tssr17532 2 37776259 to 37776274 15 + TSS region transcription start site region 17532
Tssr17533 2 37776281 to 37776297 16 + TSS region transcription start site region 17533
Cpgi11598 2 37786245 to 37787386 1141 CpG island CpG island 11598
Cpgi11599 2 37790942 to 37791195 253 CpG island CpG island 11599
Cpgi11600 2 37792814 to 37794007 1193 CpG island CpG island 11600
Dennd1a 2 37798990 to 38287384 488394 - protein coding gene DENN/MADD domain containing 1A
Tssr23776 2 37801018 to 37801030 12 - TSS region transcription start site region 23776
Tssr23777 2 37801212 to 37801226 14 - TSS region transcription start site region 23777
Tssr23778 2 37802175 to 37802204 29 - TSS region transcription start site region 23778
Tssr23779 2 37811003 to 37811007 4 - TSS region transcription start site region 23779
Tssr23780 2 37843926 to 37843944 18 - TSS region transcription start site region 23780
Tssr23781 2 37896596 to 37896618 22 - TSS region transcription start site region 23781
Tssr23782 2 37914665 to 37914669 4 - TSS region transcription start site region 23782
Tssr23783 2 37919986 to 37920008 22 - TSS region transcription start site region 23783
Tssr23784 2 37975366 to 37975373 7 - TSS region transcription start site region 23784
Tssr17534 2 38003483 to 38003484 1 + TSS region transcription start site region 17534
Gm44283 2 38015218 to 38019167 3949 - unclassified gene predicted gene, 44283
Gm44443 2 38025795 to 38031427 5632 + unclassified gene predicted gene, 44443
Tssr23785 2 38036836 to 38036848 12 - TSS region transcription start site region 23785
Tssr23786 2 38078377 to 38078378 1 - TSS region transcription start site region 23786
Gm44291 2 38104432 to 38107296 2864 - unclassified gene predicted gene, 44291
Tssr23787 2 38149747 to 38149756 9 - TSS region transcription start site region 23787
Tssr23788 2 38154484 to 38154488 4 - TSS region transcription start site region 23788
Tssr482 2 38166074 to 38166081 7 - TSS region transcription start site region 482
Tssr23789 2 38166090 to 38166120 30 - TSS region transcription start site region 23789
Tssr483 2 38166143 to 38166151 8 - TSS region transcription start site region 483
Tssr23790 2 38166159 to 38166166 7 - TSS region transcription start site region 23790
Tssr23791 2 38190679 to 38190693 14 - TSS region transcription start site region 23791
Tssr23792 2 38190864 to 38190868 4 - TSS region transcription start site region 23792
Tssr23793 2 38194454 to 38194475 21 - TSS region transcription start site region 23793
Tssr23794 2 38212441 to 38212454 13 - TSS region transcription start site region 23794
Tssr23795 2 38214443 to 38214459 16 - TSS region transcription start site region 23795
Tssr23796 2 38217015 to 38217036 21 - TSS region transcription start site region 23796
2610030P05Rik 2 38218367 to 38219848 1481 unclassified gene RIKEN cDNA 2610030P05 gene
8030493G06Rik 2 38221853 to 38224503 2650 unclassified gene RIKEN cDNA 8030493G06 gene
Tssr23797 2 38224488 to 38224507 19 - TSS region transcription start site region 23797
Gm44455 2 38225041 to 38225122 81 - miRNA gene predicted gene, 44455
Tssr23798 2 38228211 to 38228221 10 - TSS region transcription start site region 23798
Tssr23799 2 38229986 to 38229997 11 - TSS region transcription start site region 23799
Tssr23800 2 38230037 to 38230046 9 - TSS region transcription start site region 23800
Etohc1 2 38239713 to 38239859 146 QTL ethanol consumption 1
D2Mit7 2 38239713 to 38239859 146 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 7
Pbwg1.2 2 38239713 to 38239859 146 QTL postnatal body weight growth 1.2
Pvldlc1 2 38239713 to 67242263 29002550 QTL plasma VLDL-cholesterol 1
Hdl8 2 38239713 to 67242263 29002550 QTL high density lipoprotein (HDL) level 8
Lanq1 2 38239713 to 67242263 29002550 QTL lanosterol level QTL 1
Tssr23801 2 38263158 to 38263162 4 - TSS region transcription start site region 23801
Tssr23802 2 38281990 to 38281998 8 - TSS region transcription start site region 23802
Gm13556 2 38285307 to 38287291 1984 + antisense lncRNA gene predicted gene 13556
Cpgi11601 2 38286703 to 38287668 965 CpG island CpG island 11601
Tssr23803 2 38287174 to 38287195 21 - TSS region transcription start site region 23803
Tssr23804 2 38287209 to 38287225 16 - TSS region transcription start site region 23804
Tssr23805 2 38287292 to 38287298 6 - TSS region transcription start site region 23805
Tssr23806 2 38287316 to 38287321 5 - TSS region transcription start site region 23806
Tssr23807 2 38287347 to 38287394 47 - TSS region transcription start site region 23807
Tssr23808 2 38290402 to 38290416 14 - TSS region transcription start site region 23808
Gm46736 2 38335271 to 38339227 3956 - lncRNA gene predicted gene, 46736
Cpgi11602 2 38338617 to 38339962 1345 CpG island CpG island 11602
Tssr17535 2 38339258 to 38339278 20 + TSS region transcription start site region 17535
Lhx2 2 38339281 to 38369733 30452 + protein coding gene LIM homeobox protein 2
Tssr17536 2 38341068 to 38341080 12 + TSS region transcription start site region 17536
Gm27197 2 38347357 to 38348316 959 - antisense lncRNA gene predicted gene 27197
Cpgi11603 2 38347732 to 38349001 1269 CpG island CpG island 11603
Cpgi11604 2 38350469 to 38352639 2170 CpG island CpG island 11604
Tssr17537 2 38351060 to 38351080 20 + TSS region transcription start site region 17537
Tssr17538 2 38351205 to 38351214 9 + TSS region transcription start site region 17538
Tssr17539 2 38351224 to 38351246 22 + TSS region transcription start site region 17539
Tssr484 2 38351496 to 38351515 19 + TSS region transcription start site region 484
Tssr17540 2 38351680 to 38351690 10 + TSS region transcription start site region 17540
Cpgi11605 2 38354485 to 38355362 877 CpG island CpG island 11605
Tssr17541 2 38354749 to 38354764 15 + TSS region transcription start site region 17541
Tssr17542 2 38354794 to 38354804 10 + TSS region transcription start site region 17542
Cpgi11606 2 38356378 to 38357183 805 CpG island CpG island 11606
Gm13584 2 38359580 to 38363980 4400 - antisense lncRNA gene predicted gene 13584
Cpgi11607 2 38368786 to 38369133 347 CpG island CpG island 11607
Tssr23809 2 38368958 to 38369004 46 - TSS region transcription start site region 23809
Tssr23810 2 38369013 to 38369024 11 - TSS region transcription start site region 23810
Tssr17543 2 38369096 to 38369107 11 + TSS region transcription start site region 17543
Cpgi11608 2 38375960 to 38376263 303 CpG island CpG island 11608
Cpgi11609 2 38379200 to 38379561 361 CpG island CpG island 11609
Gm13589 2 38424002 to 38455851 31849 + lincRNA gene predicted gene 13589
Tssr17544 2 38432531 to 38432534 3 + TSS region transcription start site region 17544
Gm39799 2 38468277 to 38502499 34222 - lncRNA gene predicted gene, 39799
Tssr17545 2 38472152 to 38472169 17 + TSS region transcription start site region 17545
Tssr17546 2 38472194 to 38472208 14 + TSS region transcription start site region 17546
Tssr17547 2 38473124 to 38473136 12 + TSS region transcription start site region 17547
Gm25081 2 38480338 to 38480445 107 + snRNA gene predicted gene, 25081
Tssr17548 2 38481371 to 38481386 15 + TSS region transcription start site region 17548
Tssr23811 2 38484666 to 38484707 41 - TSS region transcription start site region 23811
Tssr17549 2 38490022 to 38490025 3 + TSS region transcription start site region 17549
Gm13588 2 38490104 to 38490238 134 + pseudogene predicted gene 13588
Tssr485 2 38500004 to 38500006 2 + TSS region transcription start site region 485
Gm44062 2 38500192 to 38505048 4856 + unclassified gene predicted gene, 44062
Cpgi11610 2 38511323 to 38512455 1132 CpG island CpG island 11610
Tssr17550 2 38511491 to 38511523 32 + TSS region transcription start site region 17550