Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:3620808-4234139

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72 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr15900 2 3636894 to 3636901 7 + TSS region transcription start site region 15900
Tssr22376 2 3649271 to 3649286 15 - TSS region transcription start site region 22376
Tssr15901 2 3649507 to 3649517 10 + TSS region transcription start site region 15901
Tssr15902 2 3664530 to 3664538 8 + TSS region transcription start site region 15902
Gm13183 2 3679802 to 3680590 788 - pseudogene predicted gene 13183
Tssr15903 2 3686322 to 3686356 34 + TSS region transcription start site region 15903
Gm13181 2 3686362 to 3687430 1068 + pseudogene predicted gene 13181
Tssr15904 2 3704787 to 3704798 11 + TSS region transcription start site region 15904
Fam107b 2 3704812 to 3782142 77330 + protein coding gene family with sequence similarity 107, member B
Cpgi11155 2 3713202 to 3714203 1001 CpG island CpG island 11155
Tssr22377 2 3713315 to 3713350 35 - TSS region transcription start site region 22377
Tssr15905 2 3713440 to 3713443 3 + TSS region transcription start site region 15905
Tssr15906 2 3713449 to 3713474 25 + TSS region transcription start site region 15906
Tssr15907 2 3713479 to 3713500 21 + TSS region transcription start site region 15907
Tssr15908 2 3713517 to 3713528 11 + TSS region transcription start site region 15908
Tssr22378 2 3715579 to 3715598 19 - TSS region transcription start site region 22378
Tssr22379 2 3718095 to 3718108 13 - TSS region transcription start site region 22379
Tssr15909 2 3723197 to 3723202 5 + TSS region transcription start site region 15909
Tssr15910 2 3723752 to 3723798 46 + TSS region transcription start site region 15910
Tssr22380 2 3726720 to 3726748 28 - TSS region transcription start site region 22380
Tssr22381 2 3726787 to 3726808 21 - TSS region transcription start site region 22381
Tssr15911 2 3727174 to 3727185 11 + TSS region transcription start site region 15911
Tssr15912 2 3730957 to 3730996 39 + TSS region transcription start site region 15912
Tssr15913 2 3731062 to 3731067 5 + TSS region transcription start site region 15913
Tssr22382 2 3731318 to 3731327 9 - TSS region transcription start site region 22382
Tssr15914 2 3733067 to 3733075 8 + TSS region transcription start site region 15914
Tssr15915 2 3749249 to 3749260 11 + TSS region transcription start site region 15915
Tssr15916 2 3749273 to 3749290 17 + TSS region transcription start site region 15916
Tssr15917 2 3749302 to 3749320 18 + TSS region transcription start site region 15917
Tssr15918 2 3749326 to 3749364 38 + TSS region transcription start site region 15918
Tssr15919 2 3749948 to 3749952 4 + TSS region transcription start site region 15919
Gm13185 2 3752986 to 3755177 2191 - antisense lncRNA gene predicted gene 13185
Tssr15920 2 3770639 to 3770664 25 + TSS region transcription start site region 15920
Tssr15921 2 3770673 to 3770682 9 + TSS region transcription start site region 15921
D2Mit356a 2 3778683 to 3778728 45 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 356a
D2Mit356b 2 3778683 to 3778795 112 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 356b
Tssr388 2 3779887 to 3779917 30 + TSS region transcription start site region 388
Tssr15922 2 3779922 to 3779938 16 + TSS region transcription start site region 15922
Tssr15923 2 3780090 to 3780114 24 + TSS region transcription start site region 15923
Tssr15924 2 3780923 to 3780929 6 + TSS region transcription start site region 15924
Tssr389 2 3781828 to 3781832 4 + TSS region transcription start site region 389
Gm36031 2 3807845 to 3824328 16483 + lncRNA gene predicted gene, 36031
Tssr15925 2 3810195 to 3810210 15 + TSS region transcription start site region 15925
Gm13180 2 3855030 to 3877575 22545 + lincRNA gene predicted gene 13180
Orgwq2 2 3886089 to 93591306 89705217 QTL organ weight QTL 2
D2Mit1 2 3886089 to 3886211 122 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 1
Gm13191 2 3925808 to 3929139 3331 - lincRNA gene predicted gene 13191
D2Mit115 2 3928829 to 3928983 154 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 115
D2Mit231 2 3932099 to 3932248 149 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 231
Tssr390 2 4017685 to 4017696 11 + TSS region transcription start site region 390
Tssr15926 2 4017706 to 4017722 16 + TSS region transcription start site region 15926
Frmd4a 2 4017717 to 4614043 596326 + protein coding gene FERM domain containing 4A
Tssr15927 2 4017727 to 4017745 18 + TSS region transcription start site region 15927
Tssr15928 2 4017757 to 4017768 11 + TSS region transcription start site region 15928
Gm2639 2 4051263 to 4052559 1296 - pseudogene predicted gene 2639
Tssr15929 2 4057908 to 4057919 11 + TSS region transcription start site region 15929
Tssr15930 2 4058104 to 4058134 30 + TSS region transcription start site region 15930
Gm13188 2 4081855 to 4082418 563 - pseudogene predicted gene 13188
Gm10862 2 4091140 to 4094489 3349 + sense intronic lncRNA gene predicted gene 10862
Gm38085 2 4103877 to 4106938 3061 + sense intronic lncRNA gene predicted gene, 38085
Tssr15931 2 4131659 to 4131664 5 + TSS region transcription start site region 15931
1700080N15Rik 2 4132065 to 4141141 9076 - antisense lncRNA gene RIKEN cDNA 1700080N15 gene
Gm13189 2 4137774 to 4144102 6328 + lincRNA gene predicted gene 13189
Gm37814 2 4138984 to 4142627 3643 + sense intronic lncRNA gene predicted gene, 37814
Tssr22383 2 4141128 to 4141146 18 - TSS region transcription start site region 22383
Tssr15932 2 4141270 to 4141281 11 + TSS region transcription start site region 15932
Tssr15933 2 4152588 to 4152610 22 + TSS region transcription start site region 15933
Tssr15934 2 4152615 to 4152644 29 + TSS region transcription start site region 15934
Tssr15935 2 4165964 to 4165969 5 + TSS region transcription start site region 15935
Gm37107 2 4178110 to 4180661 2551 + sense intronic lncRNA gene predicted gene, 37107
Gm38348 2 4217081 to 4219353 2272 + sense intronic lncRNA gene predicted gene, 38348
Tssr15936 2 4218167 to 4218170 3 + TSS region transcription start site region 15936