Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:35846611-36827136

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106 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ttll11 2 35751226 to 35979624 228398 - protein coding gene tubulin tyrosine ligase-like family, member 11
Gm10829 2 35844195 to 35847182 2987 + lncRNA gene predicted gene 10829
Tssr23727 2 35874677 to 35874689 12 - TSS region transcription start site region 23727
Gm35396 2 35882598 to 35930556 47958 + lncRNA gene predicted gene, 35396
Tssr23728 2 35882698 to 35882712 14 - TSS region transcription start site region 23728
Tssr17490 2 35883628 to 35883651 23 + TSS region transcription start site region 17490
Tssr481 2 35964929 to 35964930 1 + TSS region transcription start site region 481
Tssr17491 2 35978726 to 35978742 16 + TSS region transcription start site region 17491
Tssr17492 2 35978843 to 35978861 18 + TSS region transcription start site region 17492
Cpgi11578 2 35978981 to 35980151 1170 CpG island CpG island 11578
Tssr17493 2 35979322 to 35979363 41 + TSS region transcription start site region 17493
Tssr17494 2 35979387 to 35979404 17 + TSS region transcription start site region 17494
Tssr23729 2 35979756 to 35979800 44 - TSS region transcription start site region 23729
Tssr23730 2 35979809 to 35979825 16 - TSS region transcription start site region 23730
Tssr23731 2 35979837 to 35979859 22 - TSS region transcription start site region 23731
4930564I24Rik 2 35979928 to 35980241 313 unclassified gene RIKEN cDNA 4930564I24 gene
D2Mit86 2 35996175 to 35996317 142 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 86
Cpgi11579 2 36011218 to 36011884 666 CpG island CpG island 11579
Cpgi11580 2 36021648 to 36022186 538 CpG island CpG island 11580
Gm39798 2 36027558 to 36030952 3394 - lncRNA gene predicted gene, 39798
Ndufa8 2 36036334 to 36049292 12958 - protein coding gene NADH:ubiquinone oxidoreductase subunit A8
Cpgi11581 2 36048899 to 36049586 687 CpG island CpG island 11581
Tssr23732 2 36049277 to 36049357 80 - TSS region transcription start site region 23732
Tssr23733 2 36049365 to 36049376 11 - TSS region transcription start site region 23733
Tssr17495 2 36049366 to 36049412 46 + TSS region transcription start site region 17495
Tssr17496 2 36049453 to 36049507 54 + TSS region transcription start site region 17496
Morn5 2 36049473 to 36079709 30236 + protein coding gene MORN repeat containing 5
Gm43764 2 36066118 to 36069289 3171 - unclassified gene predicted gene 43764
Lhx6 2 36081953 to 36105408 23455 - protein coding gene LIM homeobox protein 6
Gm27953 2 36087356 to 36087498 142 - unclassified non-coding RNA gene predicted gene, 27953
Cpgi11582 2 36090914 to 36091853 939 CpG island CpG island 11582
Tssr23734 2 36091395 to 36091410 15 - TSS region transcription start site region 23734
Cpgi11583 2 36093984 to 36094522 538 CpG island CpG island 11583
Eae33 2 36101667 to 71779068 35677401 QTL experimental allergic encephalomyelitis susceptibility 33
D2Mit372 2 36101667 to 36101785 118 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 372
Cpgi11584 2 36102059 to 36104088 2029 CpG island CpG island 11584
Tssr23735 2 36104021 to 36104028 7 - TSS region transcription start site region 23735
Tssr23736 2 36104067 to 36104073 6 - TSS region transcription start site region 23736
Cpgi11585 2 36104569 to 36105824 1255 CpG island CpG island 11585
Tssr23737 2 36104807 to 36104818 11 - TSS region transcription start site region 23737
Tssr23738 2 36105399 to 36105434 35 - TSS region transcription start site region 23738
Rbm18 2 36116079 to 36136704 20625 - protein coding gene RNA binding motif protein 18
Cpgi11586 2 36136211 to 36136978 767 CpG island CpG island 11586
Tssr23739 2 36136259 to 36136280 21 - TSS region transcription start site region 23739
Tssr17497 2 36136384 to 36136428 44 + TSS region transcription start site region 17497
Mrrf 2 36136398 to 36190284 53886 + protein coding gene mitochondrial ribosome recycling factor
Tssr17498 2 36136442 to 36136470 28 + TSS region transcription start site region 17498
Tssr23740 2 36136553 to 36136560 7 - TSS region transcription start site region 23740
Tssr23741 2 36136578 to 36136597 19 - TSS region transcription start site region 23741
Tssr23742 2 36136602 to 36136625 23 - TSS region transcription start site region 23742
Tssr17499 2 36136620 to 36136672 52 + TSS region transcription start site region 17499
Tssr23743 2 36136814 to 36136845 31 - TSS region transcription start site region 23743
Tssr17500 2 36136933 to 36136945 12 + TSS region transcription start site region 17500
Gm13428 2 36137339 to 36137703 364 - pseudogene predicted gene 13428
Gm46735 2 36191009 to 36193743 2734 + protein coding gene predicted gene, 46735
Gm13429 2 36201896 to 36210565 8669 + unclassified non-coding RNA gene predicted gene 13429
Cpgi11587 2 36202903 to 36203402 499 CpG island CpG island 11587
Cpgi11588 2 36210408 to 36211207 799 CpG island CpG island 11588
Tssr17501 2 36216749 to 36216786 37 + TSS region transcription start site region 17501
Gm13431 2 36216777 to 36222934 6157 + lincRNA gene predicted gene 13431
Tssr17502 2 36222463 to 36222480 17 + TSS region transcription start site region 17502
Ptgs1 2 36230426 to 36252272 21846 + protein coding gene prostaglandin-endoperoxide synthase 1
Cpgi11589 2 36230458 to 36230882 424 CpG island CpG island 11589
Tssr17503 2 36230486 to 36230491 5 + TSS region transcription start site region 17503
Tssr17504 2 36230492 to 36230545 53 + TSS region transcription start site region 17504
Tssr17505 2 36230632 to 36230707 75 + TSS region transcription start site region 17505
Tssr17506 2 36237508 to 36237510 2 + TSS region transcription start site region 17506
Tssr17507 2 36237681 to 36237703 22 + TSS region transcription start site region 17507
Tssr17508 2 36237731 to 36237747 16 + TSS region transcription start site region 17508
Tssr17509 2 36237949 to 36237985 36 + TSS region transcription start site region 17509
Tssr17510 2 36239588 to 36239591 3 + TSS region transcription start site region 17510
Tssr17511 2 36241913 to 36241951 38 + TSS region transcription start site region 17511
Cpgi11590 2 36242695 to 36243007 312 CpG island CpG island 11590
Tssr17512 2 36242786 to 36242789 3 + TSS region transcription start site region 17512
Gm43621 2 36248709 to 36250730 2021 - unclassified gene predicted gene 43621
Tssr17513 2 36249655 to 36249664 9 + TSS region transcription start site region 17513
Tssr17514 2 36249695 to 36249717 22 + TSS region transcription start site region 17514
Tssr17515 2 36251711 to 36251727 16 + TSS region transcription start site region 17515
Tssr17516 2 36251740 to 36251751 11 + TSS region transcription start site region 17516
Tssr17517 2 36253315 to 36253338 23 + TSS region transcription start site region 17517
Tssr17518 2 36254689 to 36254697 8 + TSS region transcription start site region 17518
Olfr334-ps1 2 36285060 to 36285918 858 + pseudogene olfactory receptor 334, pseudogene 1
Olfr335-ps 2 36301541 to 36302479 938 + polymorphic pseudogene olfactory receptor 335, pseudogene
Olfr336-ps1 2 36323324 to 36324259 935 + pseudogene olfactory receptor 336, pseudogene 1
Olfr337-ps1 2 36336611 to 36337136 525 + pseudogene olfactory receptor 337, pseudogene 1
Olfr338 2 36376778 to 36377698 920 + protein coding gene olfactory receptor 338
Tssr17519 2 36389002 to 36389048 46 + TSS region transcription start site region 17519
Gm13430 2 36389132 to 36389419 287 + pseudogene predicted gene 13430
Olfr339 2 36421400 to 36422329 929 + protein coding gene olfactory receptor 339
Olfr340 2 36452587 to 36453525 938 + protein coding gene olfactory receptor 340
Olfr341 2 36479187 to 36480128 941 - protein coding gene olfactory receptor 341
Gm47783 2 36526820 to 36526897 77 + pseudogene predicted gene, 47783
Olfr342 2 36527414 to 36528352 938 + protein coding gene olfactory receptor 342
D2Ucl21 2 36533014 to 36533217 203 DNA segment DNA segment, Chr 2, University College London 21
Olfr343-ps1 2 36539197 to 36539499 302 + pseudogene olfactory receptor 343, pseudogene 1
Olfr344 2 36568600 to 36569529 929 + protein coding gene olfactory receptor 344
Olfr345 2 36640041 to 36640976 935 + protein coding gene olfactory receptor 345
Olfr346 2 36688004 to 36688933 929 + protein coding gene olfactory receptor 346
Tssr17520 2 36715186 to 36715196 10 + TSS region transcription start site region 17520
Olfr347 2 36734323 to 36735261 938 + protein coding gene olfactory receptor 347
Gm13438 2 36768688 to 36769260 572 + pseudogene predicted gene 13438
Olfr348 2 36784282 to 36787468 3186 + protein coding gene olfactory receptor 348
Olfr50 2 36793238 to 36794176 938 + protein coding gene olfactory receptor 50
Gm13436 2 36807826 to 36808392 566 - pseudogene predicted gene 13436
Tssr23744 2 36808419 to 36808429 10 - TSS region transcription start site region 23744
Olfr3 2 36812149 to 36813090 941 - protein coding gene olfactory receptor 3