Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:35739201-38979230

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367 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ttll11 2 35751226 to 35979624 228398 - protein coding gene tubulin tyrosine ligase-like family, member 11
Gm43760 2 35762865 to 35765879 3014 - unclassified gene predicted gene 43760
D2Mit467 2 35814271 to 35814371 100 DNA segment DNA Segment, Chr 2 Massachusetts Institute of Technology 467
D2Mit85 2 35814920 to 35815022 102 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 85
9030204H09Rik 2 35819190 to 35823385 4195 + antisense lncRNA gene RIKEN cDNA 9030204H09 gene
Gm10829 2 35844195 to 35847182 2987 + lncRNA gene predicted gene 10829
Tssr23727 2 35874677 to 35874689 12 - TSS region transcription start site region 23727
Gm35396 2 35882598 to 35930556 47958 + lncRNA gene predicted gene, 35396
Tssr23728 2 35882698 to 35882712 14 - TSS region transcription start site region 23728
Tssr17490 2 35883628 to 35883651 23 + TSS region transcription start site region 17490
Tssr481 2 35964929 to 35964930 1 + TSS region transcription start site region 481
Tssr17491 2 35978726 to 35978742 16 + TSS region transcription start site region 17491
Tssr17492 2 35978843 to 35978861 18 + TSS region transcription start site region 17492
Cpgi11578 2 35978981 to 35980151 1170 CpG island CpG island 11578
Tssr17493 2 35979322 to 35979363 41 + TSS region transcription start site region 17493
Tssr17494 2 35979387 to 35979404 17 + TSS region transcription start site region 17494
Tssr23729 2 35979756 to 35979800 44 - TSS region transcription start site region 23729
Tssr23730 2 35979809 to 35979825 16 - TSS region transcription start site region 23730
Tssr23731 2 35979837 to 35979859 22 - TSS region transcription start site region 23731
4930564I24Rik 2 35979928 to 35980241 313 unclassified gene RIKEN cDNA 4930564I24 gene
D2Mit86 2 35996175 to 35996317 142 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 86
Cpgi11579 2 36011218 to 36011884 666 CpG island CpG island 11579
Cpgi11580 2 36021648 to 36022186 538 CpG island CpG island 11580
Gm39798 2 36027558 to 36030952 3394 - lncRNA gene predicted gene, 39798
Ndufa8 2 36036334 to 36049292 12958 - protein coding gene NADH:ubiquinone oxidoreductase subunit A8
Cpgi11581 2 36048899 to 36049586 687 CpG island CpG island 11581
Tssr23732 2 36049277 to 36049357 80 - TSS region transcription start site region 23732
Tssr23733 2 36049365 to 36049376 11 - TSS region transcription start site region 23733
Tssr17495 2 36049366 to 36049412 46 + TSS region transcription start site region 17495
Tssr17496 2 36049453 to 36049507 54 + TSS region transcription start site region 17496
Morn5 2 36049473 to 36079709 30236 + protein coding gene MORN repeat containing 5
Gm43764 2 36066118 to 36069289 3171 - unclassified gene predicted gene 43764
Lhx6 2 36081953 to 36105408 23455 - protein coding gene LIM homeobox protein 6
Gm27953 2 36087356 to 36087498 142 - unclassified non-coding RNA gene predicted gene, 27953
Cpgi11582 2 36090914 to 36091853 939 CpG island CpG island 11582
Tssr23734 2 36091395 to 36091410 15 - TSS region transcription start site region 23734
Cpgi11583 2 36093984 to 36094522 538 CpG island CpG island 11583
D2Mit372 2 36101667 to 36101785 118 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 372
Eae33 2 36101667 to 71779068 35677401 QTL experimental allergic encephalomyelitis susceptibility 33
Cpgi11584 2 36102059 to 36104088 2029 CpG island CpG island 11584
Tssr23735 2 36104021 to 36104028 7 - TSS region transcription start site region 23735
Tssr23736 2 36104067 to 36104073 6 - TSS region transcription start site region 23736
Cpgi11585 2 36104569 to 36105824 1255 CpG island CpG island 11585
Tssr23737 2 36104807 to 36104818 11 - TSS region transcription start site region 23737
Tssr23738 2 36105399 to 36105434 35 - TSS region transcription start site region 23738
Rbm18 2 36116079 to 36136704 20625 - protein coding gene RNA binding motif protein 18
Cpgi11586 2 36136211 to 36136978 767 CpG island CpG island 11586
Tssr23739 2 36136259 to 36136280 21 - TSS region transcription start site region 23739
Tssr17497 2 36136384 to 36136428 44 + TSS region transcription start site region 17497
Mrrf 2 36136398 to 36190284 53886 + protein coding gene mitochondrial ribosome recycling factor
Tssr17498 2 36136442 to 36136470 28 + TSS region transcription start site region 17498
Tssr23740 2 36136553 to 36136560 7 - TSS region transcription start site region 23740
Tssr23741 2 36136578 to 36136597 19 - TSS region transcription start site region 23741
Tssr23742 2 36136602 to 36136625 23 - TSS region transcription start site region 23742
Tssr17499 2 36136620 to 36136672 52 + TSS region transcription start site region 17499
Tssr23743 2 36136814 to 36136845 31 - TSS region transcription start site region 23743
Tssr17500 2 36136933 to 36136945 12 + TSS region transcription start site region 17500
Gm13428 2 36137339 to 36137703 364 - pseudogene predicted gene 13428
Gm46735 2 36191009 to 36193743 2734 + protein coding gene predicted gene, 46735
Gm13429 2 36201896 to 36210565 8669 + unclassified non-coding RNA gene predicted gene 13429
Cpgi11587 2 36202903 to 36203402 499 CpG island CpG island 11587
Cpgi11588 2 36210408 to 36211207 799 CpG island CpG island 11588
Tssr17501 2 36216749 to 36216786 37 + TSS region transcription start site region 17501
Gm13431 2 36216777 to 36222934 6157 + lincRNA gene predicted gene 13431
Tssr17502 2 36222463 to 36222480 17 + TSS region transcription start site region 17502
Ptgs1 2 36230426 to 36252272 21846 + protein coding gene prostaglandin-endoperoxide synthase 1
Cpgi11589 2 36230458 to 36230882 424 CpG island CpG island 11589
Tssr17503 2 36230486 to 36230491 5 + TSS region transcription start site region 17503
Tssr17504 2 36230492 to 36230545 53 + TSS region transcription start site region 17504
Tssr17505 2 36230632 to 36230707 75 + TSS region transcription start site region 17505
Tssr17506 2 36237508 to 36237510 2 + TSS region transcription start site region 17506
Tssr17507 2 36237681 to 36237703 22 + TSS region transcription start site region 17507
Tssr17508 2 36237731 to 36237747 16 + TSS region transcription start site region 17508
Tssr17509 2 36237949 to 36237985 36 + TSS region transcription start site region 17509
Tssr17510 2 36239588 to 36239591 3 + TSS region transcription start site region 17510
Tssr17511 2 36241913 to 36241951 38 + TSS region transcription start site region 17511
Cpgi11590 2 36242695 to 36243007 312 CpG island CpG island 11590
Tssr17512 2 36242786 to 36242789 3 + TSS region transcription start site region 17512
Gm43621 2 36248709 to 36250730 2021 - unclassified gene predicted gene 43621
Tssr17513 2 36249655 to 36249664 9 + TSS region transcription start site region 17513
Tssr17514 2 36249695 to 36249717 22 + TSS region transcription start site region 17514
Tssr17515 2 36251711 to 36251727 16 + TSS region transcription start site region 17515
Tssr17516 2 36251740 to 36251751 11 + TSS region transcription start site region 17516
Tssr17517 2 36253315 to 36253338 23 + TSS region transcription start site region 17517
Tssr17518 2 36254689 to 36254697 8 + TSS region transcription start site region 17518
Olfr334-ps1 2 36285060 to 36285918 858 + pseudogene olfactory receptor 334, pseudogene 1
Olfr335-ps 2 36301541 to 36302479 938 + polymorphic pseudogene olfactory receptor 335, pseudogene
Olfr336-ps1 2 36323324 to 36324259 935 + pseudogene olfactory receptor 336, pseudogene 1
Olfr337-ps1 2 36336611 to 36337136 525 + pseudogene olfactory receptor 337, pseudogene 1
Olfr338 2 36376778 to 36377698 920 + protein coding gene olfactory receptor 338
Tssr17519 2 36389002 to 36389048 46 + TSS region transcription start site region 17519
Gm13430 2 36389132 to 36389419 287 + pseudogene predicted gene 13430
Olfr339 2 36421400 to 36422329 929 + protein coding gene olfactory receptor 339
Olfr340 2 36452587 to 36453525 938 + protein coding gene olfactory receptor 340
Olfr341 2 36479187 to 36480128 941 - protein coding gene olfactory receptor 341
Gm47783 2 36526820 to 36526897 77 + pseudogene predicted gene, 47783
Olfr342 2 36527414 to 36528352 938 + protein coding gene olfactory receptor 342
D2Ucl21 2 36533014 to 36533217 203 DNA segment DNA segment, Chr 2, University College London 21
Olfr343-ps1 2 36539197 to 36539499 302 + pseudogene olfactory receptor 343, pseudogene 1
Olfr344 2 36568600 to 36569529 929 + protein coding gene olfactory receptor 344
Olfr345 2 36640041 to 36640976 935 + protein coding gene olfactory receptor 345
Olfr346 2 36688004 to 36688933 929 + protein coding gene olfactory receptor 346
Tssr17520 2 36715186 to 36715196 10 + TSS region transcription start site region 17520
Olfr347 2 36734323 to 36735261 938 + protein coding gene olfactory receptor 347
Gm13438 2 36768688 to 36769260 572 + pseudogene predicted gene 13438
Olfr348 2 36784282 to 36787468 3186 + protein coding gene olfactory receptor 348
Olfr50 2 36793238 to 36794176 938 + protein coding gene olfactory receptor 50
Gm13436 2 36807826 to 36808392 566 - pseudogene predicted gene 13436
Tssr23744 2 36808419 to 36808429 10 - TSS region transcription start site region 23744
Olfr3 2 36812149 to 36813090 941 - protein coding gene olfactory receptor 3
Olfr349-ps1 2 36844518 to 36845126 608 + pseudogene olfactory receptor 349, pseudogene 1
Olfr350 2 36850048 to 36850986 938 + protein coding gene olfactory receptor 350
Olfr351 2 36859414 to 36860346 932 - protein coding gene olfactory receptor 351
Olfr352 2 36869568 to 36870515 947 + protein coding gene olfactory receptor 352
Olfr353 2 36889911 to 36890846 935 - protein coding gene olfactory receptor 353
Olfr354 2 36906948 to 36907901 953 + protein coding gene olfactory receptor 354
Gm13440 2 36909095 to 36909590 495 + pseudogene predicted gene 13440
Olfr355 2 36927180 to 36928112 932 - protein coding gene olfactory receptor 355
Olfr356 2 36937121 to 36938068 947 + protein coding gene olfactory receptor 356
Olfr357 2 36996812 to 36997738 926 + protein coding gene olfactory receptor 357
Olfr358 2 37004620 to 37005612 992 - protein coding gene olfactory receptor 358
Olfr359-ps1 2 37019271 to 37020196 925 - pseudogene olfactory receptor 359, pseudogene 1
Gm13439 2 37036024 to 37036432 408 + pseudogene predicted gene 13439
Olfr360 2 37068307 to 37069260 953 + protein coding gene olfactory receptor 360
Gm13437 2 37074022 to 37082455 8433 - pseudogene predicted gene 13437
Olfr361 2 37084778 to 37085746 968 - protein coding gene olfactory receptor 361
Olfr362 2 37104695 to 37105648 953 - protein coding gene olfactory receptor 362
Olfr363-ps 2 37106257 to 37106510 253 - pseudogene olfactory receptor 363, pseudogene
Olfr364-ps1 2 37146214 to 37147137 923 + pseudogene olfactory receptor 364, pseudogene 1
Tssr23745 2 37146567 to 37146572 5 - TSS region transcription start site region 23745
Olfr365 2 37192905 to 37202181 9276 + protein coding gene olfactory receptor 365
Gm13435 2 37207051 to 37208072 1021 + pseudogene predicted gene 13435
Olfr366 2 37219491 to 37220420 929 + protein coding gene olfactory receptor 366
Olfr367-ps 2 37266951 to 37271387 4436 + pseudogene olfactory receptor 367, pseudogene
Gm22306 2 37282051 to 37282157 106 + snRNA gene predicted gene, 22306
Olfr368 2 37331749 to 37332732 983 + protein coding gene olfactory receptor 368
Pdcl 2 37350074 to 37359332 9258 - protein coding gene phosducin-like
Tssr23746 2 37350844 to 37350861 17 - TSS region transcription start site region 23746
Tssr23747 2 37351072 to 37351090 18 - TSS region transcription start site region 23747
Cpgi11591 2 37358875 to 37359410 535 CpG island CpG island 11591
Tssr23748 2 37359201 to 37359230 29 - TSS region transcription start site region 23748
Tssr23749 2 37359235 to 37359270 35 - TSS region transcription start site region 23749
Tssr23750 2 37359274 to 37359290 16 - TSS region transcription start site region 23750
Tssr23751 2 37367735 to 37367745 10 - TSS region transcription start site region 23751
Rc3h2 2 37370069 to 37422903 52834 - protein coding gene ring finger and CCCH-type zinc finger domains 2
Tssr23752 2 37373445 to 37373482 37 - TSS region transcription start site region 23752
Tssr23753 2 37374665 to 37374669 4 - TSS region transcription start site region 23753
Snord90 2 37400061 to 37400128 67 - snoRNA gene small nucleolar RNA, C/D box 90
Cpgi11592 2 37422248 to 37423217 969 CpG island CpG island 11592
Tssr23754 2 37422895 to 37422958 63 - TSS region transcription start site region 23754
Tssr23755 2 37423006 to 37423055 49 - TSS region transcription start site region 23755
Zbtb6 2 37425500 to 37430919 5419 - protein coding gene zinc finger and BTB domain containing 6
Tssr23756 2 37428251 to 37428284 33 - TSS region transcription start site region 23756
Cpgi11593 2 37430553 to 37431208 655 CpG island CpG island 11593
Tssr23757 2 37430808 to 37430821 13 - TSS region transcription start site region 23757
Tssr23758 2 37430835 to 37430898 63 - TSS region transcription start site region 23758
Tssr17521 2 37430924 to 37430973 49 + TSS region transcription start site region 17521
Zbtb26 2 37432168 to 37443121 10953 - protein coding gene zinc finger and BTB domain containing 26
Cpgi11594 2 37442944 to 37443559 615 CpG island CpG island 11594
Tssr23759 2 37443096 to 37443178 82 - TSS region transcription start site region 23759
Tssr17522 2 37443273 to 37443339 66 + TSS region transcription start site region 17522
Rabgap1 2 37443281 to 37566454 123173 + protein coding gene RAB GTPase activating protein 1
Tssr17523 2 37443342 to 37443359 17 + TSS region transcription start site region 17523
Cpgi11595 2 37451982 to 37452686 704 CpG island CpG island 11595
Tssr17524 2 37452216 to 37452230 14 + TSS region transcription start site region 17524
Tssr17525 2 37452231 to 37452286 55 + TSS region transcription start site region 17525
Gm17893 2 37488675 to 37489444 769 + pseudogene predicted gene, 17893
Tssr17526 2 37505396 to 37505400 4 + TSS region transcription start site region 17526
Tssr17527 2 37516592 to 37516606 14 + TSS region transcription start site region 17527
Tssr17528 2 37516618 to 37516634 16 + TSS region transcription start site region 17528
Gpr21 2 37516626 to 37519281 2655 + protein coding gene G protein-coupled receptor 21
Tssr17529 2 37532775 to 37532779 4 + TSS region transcription start site region 17529
Tssr17530 2 37551386 to 37551389 3 + TSS region transcription start site region 17530
Strbp 2 37569868 to 37703967 134099 - protein coding gene spermatid perinuclear RNA binding protein
Tssr23760 2 37573613 to 37573617 4 - TSS region transcription start site region 23760
Tssr23761 2 37577572 to 37577588 16 - TSS region transcription start site region 23761
Tssr23762 2 37583052 to 37583056 4 - TSS region transcription start site region 23762
Tssr23763 2 37585879 to 37585882 3 - TSS region transcription start site region 23763
Tssr23764 2 37591575 to 37591578 3 - TSS region transcription start site region 23764
Tssr23765 2 37592727 to 37592731 4 - TSS region transcription start site region 23765
Tssr23766 2 37632923 to 37632926 3 - TSS region transcription start site region 23766
Tssr23767 2 37647199 to 37647229 30 - TSS region transcription start site region 23767
Tssr23768 2 37656526 to 37656529 3 - TSS region transcription start site region 23768
Gm44063 2 37659146 to 37659521 375 + pseudogene predicted gene, 44063
Tssr23769 2 37661160 to 37661164 4 - TSS region transcription start site region 23769
Gm13543 2 37672208 to 37673003 795 + pseudogene predicted gene 13543
Tssr23770 2 37677896 to 37677901 5 - TSS region transcription start site region 23770
Mir5128 2 37688201 to 37688284 83 - miRNA gene microRNA 5128
Tssr23771 2 37689156 to 37689159 3 - TSS region transcription start site region 23771
Cpgi11596 2 37702378 to 37704031 1653 CpG island CpG island 11596
Tssr23772 2 37703067 to 37703094 27 - TSS region transcription start site region 23772
Tssr23773 2 37703279 to 37703290 11 - TSS region transcription start site region 23773
Tssr23774 2 37703299 to 37703382 83 - TSS region transcription start site region 23774
Tssr23775 2 37703845 to 37703885 40 - TSS region transcription start site region 23775
Cpgi11597 2 37765249 to 37765443 194 CpG island CpG island 11597
Tssr17531 2 37776229 to 37776258 29 + TSS region transcription start site region 17531
Crb2 2 37776249 to 37799103 22854 + protein coding gene crumbs family member 2
Tssr17532 2 37776259 to 37776274 15 + TSS region transcription start site region 17532
Tssr17533 2 37776281 to 37776297 16 + TSS region transcription start site region 17533
Cpgi11598 2 37786245 to 37787386 1141 CpG island CpG island 11598