Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:35386893-35996953

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81 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
4930402F06Rik 2 35375562 to 35397174 21612 - protein coding gene RIKEN cDNA 4930402F06 gene
Gm39797 2 35376280 to 35387709 11429 + lncRNA gene predicted gene, 39797
Tssr23708 2 35397174 to 35397208 34 - TSS region transcription start site region 23708
Ggta1 2 35400179 to 35463231 63052 - protein coding gene glycoprotein galactosyltransferase alpha 1, 3
Tssr23709 2 35402376 to 35402391 15 - TSS region transcription start site region 23709
D2Mit515 2 35406491 to 35406607 116 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology-515
Tssr17470 2 35426545 to 35426549 4 + TSS region transcription start site region 17470
Tssr23710 2 35432552 to 35432623 71 - TSS region transcription start site region 23710
Tssr23711 2 35432781 to 35432797 16 - TSS region transcription start site region 23711
Tssr23712 2 35432825 to 35432836 11 - TSS region transcription start site region 23712
Tssr23713 2 35432901 to 35432910 9 - TSS region transcription start site region 23713
Gm43761 2 35436321 to 35437311 990 - unclassified gene predicted gene 43761
Tssr23714 2 35442089 to 35442123 34 - TSS region transcription start site region 23714
Tssr23715 2 35442129 to 35442149 20 - TSS region transcription start site region 23715
Tssr23716 2 35442154 to 35442180 26 - TSS region transcription start site region 23716
Tssr17471 2 35444700 to 35444721 21 + TSS region transcription start site region 17471
Tssr23717 2 35457845 to 35457866 21 - TSS region transcription start site region 23717
Tssr23718 2 35461247 to 35461271 24 - TSS region transcription start site region 23718
Tssr23719 2 35461272 to 35461291 19 - TSS region transcription start site region 23719
Tssr23720 2 35461365 to 35461413 48 - TSS region transcription start site region 23720
Tssr17472 2 35461502 to 35461516 14 + TSS region transcription start site region 17472
Cpgi11571 2 35461927 to 35462697 770 CpG island CpG island 11571
Tssr23721 2 35462454 to 35462503 49 - TSS region transcription start site region 23721
Tssr23722 2 35462519 to 35462574 55 - TSS region transcription start site region 23722
Tssr23723 2 35462718 to 35462721 3 - TSS region transcription start site region 23723
Tssr23724 2 35462793 to 35462832 39 - TSS region transcription start site region 23724
Tssr23725 2 35463499 to 35463528 29 - TSS region transcription start site region 23725
Gm13444 2 35483384 to 35483905 521 - pseudogene predicted gene 13444
Cpgi11572 2 35491149 to 35491628 479 CpG island CpG island 11572
Gm13445 2 35491213 to 35491519 306 - pseudogene predicted gene 13445
Gm35260 2 35492024 to 35504928 12904 - lncRNA gene predicted gene, 35260
Tssr480 2 35496200 to 35496212 12 + TSS region transcription start site region 480
Tssr17473 2 35503517 to 35503536 19 + TSS region transcription start site region 17473
Gm35202 2 35503531 to 35506090 2559 + lincRNA gene predicted gene, 35202
Tssr23726 2 35504333 to 35504337 4 - TSS region transcription start site region 23726
D2Mit122 2 35529099 to 35529243 144 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 122
Cpgi11573 2 35544958 to 35545124 166 CpG island CpG island 11573
Gm13446 2 35549538 to 35558702 9164 - lncRNA gene predicted gene 13446
Tssr17474 2 35558452 to 35558487 35 + TSS region transcription start site region 17474
Dab2ip 2 35558458 to 35730994 172536 + protein coding gene disabled 2 interacting protein
Tssr17475 2 35562746 to 35562750 4 + TSS region transcription start site region 17475
Tssr17476 2 35562758 to 35562771 13 + TSS region transcription start site region 17476
Cpgi11574 2 35581438 to 35583196 1758 CpG island CpG island 11574
Tssr17477 2 35581602 to 35581651 49 + TSS region transcription start site region 17477
Tssr17478 2 35582829 to 35582851 22 + TSS region transcription start site region 17478
D2Mit319 2 35583402 to 35583507 105 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 319
Cpgi11575 2 35621526 to 35622445 919 CpG island CpG island 11575
Tssr17479 2 35621999 to 35622004 5 + TSS region transcription start site region 17479
Tssr17480 2 35622010 to 35622063 53 + TSS region transcription start site region 17480
Tssr17481 2 35622198 to 35622200 2 + TSS region transcription start site region 17481
Cpgi11576 2 35660659 to 35662602 1943 CpG island CpG island 11576
Tssr17482 2 35661268 to 35661290 22 + TSS region transcription start site region 17482
Tssr17483 2 35661296 to 35661369 73 + TSS region transcription start site region 17483
Tssr17484 2 35661485 to 35661518 33 + TSS region transcription start site region 17484
Tssr17485 2 35663636 to 35663651 15 + TSS region transcription start site region 17485
Tssr17486 2 35680567 to 35680572 5 + TSS region transcription start site region 17486
Tssr17487 2 35691893 to 35691953 60 + TSS region transcription start site region 17487
Tssr17488 2 35713174 to 35713183 9 + TSS region transcription start site region 17488
Cpgi11577 2 35720302 to 35720529 227 CpG island CpG island 11577
Tssr17489 2 35736318 to 35736334 16 + TSS region transcription start site region 17489
Ttll11 2 35751226 to 35979624 228398 - protein coding gene tubulin tyrosine ligase-like family, member 11
Gm43760 2 35762865 to 35765879 3014 - unclassified gene predicted gene 43760
D2Mit467 2 35814271 to 35814371 100 DNA segment DNA Segment, Chr 2 Massachusetts Institute of Technology 467
D2Mit85 2 35814920 to 35815022 102 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 85
9030204H09Rik 2 35819190 to 35823385 4195 + antisense lncRNA gene RIKEN cDNA 9030204H09 gene
Gm10829 2 35844195 to 35847182 2987 + lncRNA gene predicted gene 10829
Tssr23727 2 35874677 to 35874689 12 - TSS region transcription start site region 23727
Gm35396 2 35882598 to 35930556 47958 + lncRNA gene predicted gene, 35396
Tssr23728 2 35882698 to 35882712 14 - TSS region transcription start site region 23728
Tssr17490 2 35883628 to 35883651 23 + TSS region transcription start site region 17490
Tssr481 2 35964929 to 35964930 1 + TSS region transcription start site region 481
Tssr17491 2 35978726 to 35978742 16 + TSS region transcription start site region 17491
Tssr17492 2 35978843 to 35978861 18 + TSS region transcription start site region 17492
Cpgi11578 2 35978981 to 35980151 1170 CpG island CpG island 11578
Tssr17493 2 35979322 to 35979363 41 + TSS region transcription start site region 17493
Tssr17494 2 35979387 to 35979404 17 + TSS region transcription start site region 17494
Tssr23729 2 35979756 to 35979800 44 - TSS region transcription start site region 23729
Tssr23730 2 35979809 to 35979825 16 - TSS region transcription start site region 23730
Tssr23731 2 35979837 to 35979859 22 - TSS region transcription start site region 23731
4930564I24Rik 2 35979928 to 35980241 313 unclassified gene RIKEN cDNA 4930564I24 gene
D2Mit86 2 35996175 to 35996317 142 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 86