Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:35312598-36500556

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171 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Stom 2 35313986 to 35336976 22990 - protein coding gene stomatin
Tssr23699 2 35315222 to 35315248 26 - TSS region transcription start site region 23699
Tssr23700 2 35315273 to 35315285 12 - TSS region transcription start site region 23700
Tssr23701 2 35315426 to 35315448 22 - TSS region transcription start site region 23701
Tssr23702 2 35315495 to 35315506 11 - TSS region transcription start site region 23702
Tssr23703 2 35315637 to 35315648 11 - TSS region transcription start site region 23703
Tssr17468 2 35331070 to 35331073 3 + TSS region transcription start site region 17468
Cpgi11570 2 35336495 to 35337272 777 CpG island CpG island 11570
Tssr23704 2 35336969 to 35336983 14 - TSS region transcription start site region 23704
Tssr23705 2 35337003 to 35337017 14 - TSS region transcription start site region 23705
Tssr17469 2 35340337 to 35340366 29 + TSS region transcription start site region 17469
Gm13443 2 35340409 to 35340963 554 + pseudogene predicted gene 13443
Tssr479 2 35341560 to 35341565 5 + TSS region transcription start site region 479
4930568D16Rik 2 35354218 to 35367729 13511 - protein coding gene RIKEN cDNA 4930568D16 gene
Tssr23706 2 35367716 to 35367726 10 - TSS region transcription start site region 23706
Tssr23707 2 35367730 to 35367737 7 - TSS region transcription start site region 23707
4930402F06Rik 2 35375562 to 35397174 21612 - protein coding gene RIKEN cDNA 4930402F06 gene
Gm39797 2 35376280 to 35387709 11429 + lncRNA gene predicted gene, 39797
Tssr23708 2 35397174 to 35397208 34 - TSS region transcription start site region 23708
Ggta1 2 35400179 to 35463231 63052 - protein coding gene glycoprotein galactosyltransferase alpha 1, 3
Tssr23709 2 35402376 to 35402391 15 - TSS region transcription start site region 23709
D2Mit515 2 35406491 to 35406607 116 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology-515
Tssr17470 2 35426545 to 35426549 4 + TSS region transcription start site region 17470
Tssr23710 2 35432552 to 35432623 71 - TSS region transcription start site region 23710
Tssr23711 2 35432781 to 35432797 16 - TSS region transcription start site region 23711
Tssr23712 2 35432825 to 35432836 11 - TSS region transcription start site region 23712
Tssr23713 2 35432901 to 35432910 9 - TSS region transcription start site region 23713
Gm43761 2 35436321 to 35437311 990 - unclassified gene predicted gene 43761
Tssr23714 2 35442089 to 35442123 34 - TSS region transcription start site region 23714
Tssr23715 2 35442129 to 35442149 20 - TSS region transcription start site region 23715
Tssr23716 2 35442154 to 35442180 26 - TSS region transcription start site region 23716
Tssr17471 2 35444700 to 35444721 21 + TSS region transcription start site region 17471
Tssr23717 2 35457845 to 35457866 21 - TSS region transcription start site region 23717
Tssr23718 2 35461247 to 35461271 24 - TSS region transcription start site region 23718
Tssr23719 2 35461272 to 35461291 19 - TSS region transcription start site region 23719
Tssr23720 2 35461365 to 35461413 48 - TSS region transcription start site region 23720
Tssr17472 2 35461502 to 35461516 14 + TSS region transcription start site region 17472
Cpgi11571 2 35461927 to 35462697 770 CpG island CpG island 11571
Tssr23721 2 35462454 to 35462503 49 - TSS region transcription start site region 23721
Tssr23722 2 35462519 to 35462574 55 - TSS region transcription start site region 23722
Tssr23723 2 35462718 to 35462721 3 - TSS region transcription start site region 23723
Tssr23724 2 35462793 to 35462832 39 - TSS region transcription start site region 23724
Tssr23725 2 35463499 to 35463528 29 - TSS region transcription start site region 23725
Gm13444 2 35483384 to 35483905 521 - pseudogene predicted gene 13444
Cpgi11572 2 35491149 to 35491628 479 CpG island CpG island 11572
Gm13445 2 35491213 to 35491519 306 - pseudogene predicted gene 13445
Gm35260 2 35492024 to 35504928 12904 - lncRNA gene predicted gene, 35260
Tssr480 2 35496200 to 35496212 12 + TSS region transcription start site region 480
Tssr17473 2 35503517 to 35503536 19 + TSS region transcription start site region 17473
Gm35202 2 35503531 to 35506090 2559 + lincRNA gene predicted gene, 35202
Tssr23726 2 35504333 to 35504337 4 - TSS region transcription start site region 23726
D2Mit122 2 35529099 to 35529243 144 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 122
Cpgi11573 2 35544958 to 35545124 166 CpG island CpG island 11573
Gm13446 2 35549538 to 35558702 9164 - lncRNA gene predicted gene 13446
Tssr17474 2 35558452 to 35558487 35 + TSS region transcription start site region 17474
Dab2ip 2 35558458 to 35730994 172536 + protein coding gene disabled 2 interacting protein
Tssr17475 2 35562746 to 35562750 4 + TSS region transcription start site region 17475
Tssr17476 2 35562758 to 35562771 13 + TSS region transcription start site region 17476
Cpgi11574 2 35581438 to 35583196 1758 CpG island CpG island 11574
Tssr17477 2 35581602 to 35581651 49 + TSS region transcription start site region 17477
Tssr17478 2 35582829 to 35582851 22 + TSS region transcription start site region 17478
D2Mit319 2 35583402 to 35583507 105 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 319
Cpgi11575 2 35621526 to 35622445 919 CpG island CpG island 11575
Tssr17479 2 35621999 to 35622004 5 + TSS region transcription start site region 17479
Tssr17480 2 35622010 to 35622063 53 + TSS region transcription start site region 17480
Tssr17481 2 35622198 to 35622200 2 + TSS region transcription start site region 17481
Cpgi11576 2 35660659 to 35662602 1943 CpG island CpG island 11576
Tssr17482 2 35661268 to 35661290 22 + TSS region transcription start site region 17482
Tssr17483 2 35661296 to 35661369 73 + TSS region transcription start site region 17483
Tssr17484 2 35661485 to 35661518 33 + TSS region transcription start site region 17484
Tssr17485 2 35663636 to 35663651 15 + TSS region transcription start site region 17485
Tssr17486 2 35680567 to 35680572 5 + TSS region transcription start site region 17486
Tssr17487 2 35691893 to 35691953 60 + TSS region transcription start site region 17487
Tssr17488 2 35713174 to 35713183 9 + TSS region transcription start site region 17488
Cpgi11577 2 35720302 to 35720529 227 CpG island CpG island 11577
Tssr17489 2 35736318 to 35736334 16 + TSS region transcription start site region 17489
Ttll11 2 35751226 to 35979624 228398 - protein coding gene tubulin tyrosine ligase-like family, member 11
Gm43760 2 35762865 to 35765879 3014 - unclassified gene predicted gene 43760
D2Mit467 2 35814271 to 35814371 100 DNA segment DNA Segment, Chr 2 Massachusetts Institute of Technology 467
D2Mit85 2 35814920 to 35815022 102 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 85
9030204H09Rik 2 35819190 to 35823385 4195 + antisense lncRNA gene RIKEN cDNA 9030204H09 gene
Gm10829 2 35844195 to 35847182 2987 + lncRNA gene predicted gene 10829
Tssr23727 2 35874677 to 35874689 12 - TSS region transcription start site region 23727
Gm35396 2 35882598 to 35930556 47958 + lncRNA gene predicted gene, 35396
Tssr23728 2 35882698 to 35882712 14 - TSS region transcription start site region 23728
Tssr17490 2 35883628 to 35883651 23 + TSS region transcription start site region 17490
Tssr481 2 35964929 to 35964930 1 + TSS region transcription start site region 481
Tssr17491 2 35978726 to 35978742 16 + TSS region transcription start site region 17491
Tssr17492 2 35978843 to 35978861 18 + TSS region transcription start site region 17492
Cpgi11578 2 35978981 to 35980151 1170 CpG island CpG island 11578
Tssr17493 2 35979322 to 35979363 41 + TSS region transcription start site region 17493
Tssr17494 2 35979387 to 35979404 17 + TSS region transcription start site region 17494
Tssr23729 2 35979756 to 35979800 44 - TSS region transcription start site region 23729
Tssr23730 2 35979809 to 35979825 16 - TSS region transcription start site region 23730
Tssr23731 2 35979837 to 35979859 22 - TSS region transcription start site region 23731
4930564I24Rik 2 35979928 to 35980241 313 unclassified gene RIKEN cDNA 4930564I24 gene
D2Mit86 2 35996175 to 35996317 142 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 86
Cpgi11579 2 36011218 to 36011884 666 CpG island CpG island 11579
Cpgi11580 2 36021648 to 36022186 538 CpG island CpG island 11580
Gm39798 2 36027558 to 36030952 3394 - lncRNA gene predicted gene, 39798
Ndufa8 2 36036334 to 36049292 12958 - protein coding gene NADH:ubiquinone oxidoreductase subunit A8
Cpgi11581 2 36048899 to 36049586 687 CpG island CpG island 11581
Tssr23732 2 36049277 to 36049357 80 - TSS region transcription start site region 23732
Tssr23733 2 36049365 to 36049376 11 - TSS region transcription start site region 23733
Tssr17495 2 36049366 to 36049412 46 + TSS region transcription start site region 17495
Tssr17496 2 36049453 to 36049507 54 + TSS region transcription start site region 17496
Morn5 2 36049473 to 36079709 30236 + protein coding gene MORN repeat containing 5
Gm43764 2 36066118 to 36069289 3171 - unclassified gene predicted gene 43764
Lhx6 2 36081953 to 36105408 23455 - protein coding gene LIM homeobox protein 6
Gm27953 2 36087356 to 36087498 142 - unclassified non-coding RNA gene predicted gene, 27953
Cpgi11582 2 36090914 to 36091853 939 CpG island CpG island 11582
Tssr23734 2 36091395 to 36091410 15 - TSS region transcription start site region 23734
Cpgi11583 2 36093984 to 36094522 538 CpG island CpG island 11583
Eae33 2 36101667 to 71779068 35677401 QTL experimental allergic encephalomyelitis susceptibility 33
D2Mit372 2 36101667 to 36101785 118 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 372
Cpgi11584 2 36102059 to 36104088 2029 CpG island CpG island 11584
Tssr23735 2 36104021 to 36104028 7 - TSS region transcription start site region 23735
Tssr23736 2 36104067 to 36104073 6 - TSS region transcription start site region 23736
Cpgi11585 2 36104569 to 36105824 1255 CpG island CpG island 11585
Tssr23737 2 36104807 to 36104818 11 - TSS region transcription start site region 23737
Tssr23738 2 36105399 to 36105434 35 - TSS region transcription start site region 23738
Rbm18 2 36116079 to 36136704 20625 - protein coding gene RNA binding motif protein 18
Cpgi11586 2 36136211 to 36136978 767 CpG island CpG island 11586
Tssr23739 2 36136259 to 36136280 21 - TSS region transcription start site region 23739
Tssr17497 2 36136384 to 36136428 44 + TSS region transcription start site region 17497
Mrrf 2 36136398 to 36190284 53886 + protein coding gene mitochondrial ribosome recycling factor
Tssr17498 2 36136442 to 36136470 28 + TSS region transcription start site region 17498
Tssr23740 2 36136553 to 36136560 7 - TSS region transcription start site region 23740
Tssr23741 2 36136578 to 36136597 19 - TSS region transcription start site region 23741
Tssr23742 2 36136602 to 36136625 23 - TSS region transcription start site region 23742
Tssr17499 2 36136620 to 36136672 52 + TSS region transcription start site region 17499
Tssr23743 2 36136814 to 36136845 31 - TSS region transcription start site region 23743
Tssr17500 2 36136933 to 36136945 12 + TSS region transcription start site region 17500
Gm13428 2 36137339 to 36137703 364 - pseudogene predicted gene 13428
Gm46735 2 36191009 to 36193743 2734 + protein coding gene predicted gene, 46735
Gm13429 2 36201896 to 36210565 8669 + unclassified non-coding RNA gene predicted gene 13429
Cpgi11587 2 36202903 to 36203402 499 CpG island CpG island 11587
Cpgi11588 2 36210408 to 36211207 799 CpG island CpG island 11588
Tssr17501 2 36216749 to 36216786 37 + TSS region transcription start site region 17501
Gm13431 2 36216777 to 36222934 6157 + lincRNA gene predicted gene 13431
Tssr17502 2 36222463 to 36222480 17 + TSS region transcription start site region 17502
Ptgs1 2 36230426 to 36252272 21846 + protein coding gene prostaglandin-endoperoxide synthase 1
Cpgi11589 2 36230458 to 36230882 424 CpG island CpG island 11589
Tssr17503 2 36230486 to 36230491 5 + TSS region transcription start site region 17503
Tssr17504 2 36230492 to 36230545 53 + TSS region transcription start site region 17504
Tssr17505 2 36230632 to 36230707 75 + TSS region transcription start site region 17505
Tssr17506 2 36237508 to 36237510 2 + TSS region transcription start site region 17506
Tssr17507 2 36237681 to 36237703 22 + TSS region transcription start site region 17507
Tssr17508 2 36237731 to 36237747 16 + TSS region transcription start site region 17508
Tssr17509 2 36237949 to 36237985 36 + TSS region transcription start site region 17509
Tssr17510 2 36239588 to 36239591 3 + TSS region transcription start site region 17510
Tssr17511 2 36241913 to 36241951 38 + TSS region transcription start site region 17511
Cpgi11590 2 36242695 to 36243007 312 CpG island CpG island 11590
Tssr17512 2 36242786 to 36242789 3 + TSS region transcription start site region 17512
Gm43621 2 36248709 to 36250730 2021 - unclassified gene predicted gene 43621
Tssr17513 2 36249655 to 36249664 9 + TSS region transcription start site region 17513
Tssr17514 2 36249695 to 36249717 22 + TSS region transcription start site region 17514
Tssr17515 2 36251711 to 36251727 16 + TSS region transcription start site region 17515
Tssr17516 2 36251740 to 36251751 11 + TSS region transcription start site region 17516
Tssr17517 2 36253315 to 36253338 23 + TSS region transcription start site region 17517
Tssr17518 2 36254689 to 36254697 8 + TSS region transcription start site region 17518
Olfr334-ps1 2 36285060 to 36285918 858 + pseudogene olfactory receptor 334, pseudogene 1
Olfr335-ps 2 36301541 to 36302479 938 + polymorphic pseudogene olfactory receptor 335, pseudogene
Olfr336-ps1 2 36323324 to 36324259 935 + pseudogene olfactory receptor 336, pseudogene 1
Olfr337-ps1 2 36336611 to 36337136 525 + pseudogene olfactory receptor 337, pseudogene 1
Olfr338 2 36376778 to 36377698 920 + protein coding gene olfactory receptor 338
Tssr17519 2 36389002 to 36389048 46 + TSS region transcription start site region 17519
Gm13430 2 36389132 to 36389419 287 + pseudogene predicted gene 13430
Olfr339 2 36421400 to 36422329 929 + protein coding gene olfactory receptor 339
Olfr340 2 36452587 to 36453525 938 + protein coding gene olfactory receptor 340
Olfr341 2 36479187 to 36480128 941 - protein coding gene olfactory receptor 341